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Conserved domains on  [gi|2127873185|ref|YP_010204199|]
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ribosomal protein L20 (mitochondrion) [Ahnfeltia fastigiata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L20 super family cl00393
Ribosomal protein L20; The ribosomal protein family L20 contains members from eubacteria, as ...
 18-63 6.38e-04

Ribosomal protein L20; The ribosomal protein family L20 contains members from eubacteria, as well as their mitochondrial and plastid homologs. L20 is an assembly protein, required for the first in-vitro reconstitution step of the 50S ribosomal subunit, but does not seem to be essential for ribosome activity. L20 has been shown to partially unfold in the absence of RNA, in regions corresponding to the RNA-binding sites. L20 represses the translation of its own mRNA via specific binding to two distinct mRNA sites, in a manner similar to the L20 interaction with 23S ribosomal RNA.


The actual alignment was detected with superfamily member CHL00068:

Pssm-ID: 469757 [Multi-domain]  Cd Length: 115  Bit Score: 35.57  E-value: 6.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2127873185  18 RRLKKRYIRKNQLTKANS---SGFVSYNLIPHFYKKQGIFLNNKIIAQI 63
Cdd:CHL00068   50 RKKKKRDFRRLWITRINAairENGVSYSKFIHNLYKNQILLNRKILAQI 98
 
Name Accession Description Interval E-value
rpl20 CHL00068
ribosomal protein L20
 18-63 6.38e-04

ribosomal protein L20


Pssm-ID: 214352 [Multi-domain]  Cd Length: 115  Bit Score: 35.57  E-value: 6.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2127873185  18 RRLKKRYIRKNQLTKANS---SGFVSYNLIPHFYKKQGIFLNNKIIAQI 63
Cdd:CHL00068   50 RKKKKRDFRRLWITRINAairENGVSYSKFIHNLYKNQILLNRKILAQI 98
 
Name Accession Description Interval E-value
rpl20 CHL00068
ribosomal protein L20
 18-63 6.38e-04

ribosomal protein L20


Pssm-ID: 214352 [Multi-domain]  Cd Length: 115  Bit Score: 35.57  E-value: 6.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2127873185  18 RRLKKRYIRKNQLTKANS---SGFVSYNLIPHFYKKQGIFLNNKIIAQI 63
Cdd:CHL00068   50 RKKKKRDFRRLWITRINAairENGVSYSKFIHNLYKNQILLNRKILAQI 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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