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Conserved domains on  [gi|2206972897|ref|YP_010291952|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Phlaeoba antennata]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-445 1.19e-163

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 468.48  E-value: 1.19e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWLVHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  81 LSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 161 VYSFSNTLYFPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 241 LGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 321 IYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2206972897 401 YSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLKEWMFLFL 445
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-445 1.19e-163

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 468.48  E-value: 1.19e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWLVHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  81 LSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 161 VYSFSNTLYFPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 241 LGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 321 IYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2206972897 401 YSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLKEWMFLFL 445
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
48-399 1.29e-56

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 194.53  E-value: 1.29e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASSSVylSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 128 LGWGYqPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL------FDFGSYYFMFYVFIIlAFLVKMPMFFVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 202 LWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisyLGM------KFNFFLLSLSLFGGVIISFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2206972897 356 AAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-388 4.90e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 182.13  E-value: 4.90e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINFMPSMSL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2206972897 346 WWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 3.92e-46

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 166.27  E-value: 3.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASSSVYLSSYHFNLFVFIVLFLLIMlyCSFSSLSLLSFYIFFESSLIPTLCLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 128 LGWGyQPERLQAGLYLIFYTLIASLPLLLVLFSVY-----SFSNTLYFPLLFDFGSYYFMFYVFIIlAFLVKMPMFFVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYflgggTFDLLELLNLPLPFGVQTWLFLAFFI-AFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMK-FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 282 MSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2206972897 362 NLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-445 1.19e-163

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 468.48  E-value: 1.19e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWLVHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  81 LSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 161 VYSFSNTLYFPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 241 LGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 321 IYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2206972897 401 YSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLKEWMFLFL 445
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
47-445 7.24e-120

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 356.07  E-value: 7.24e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  47 MISYFFGVDYFSFSLILLSFWICSLMITASSSVYLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 127 ILGWGYQPERLQAGLYLIFYTLIASLPLLLVL---FSVYSFSNTLYFPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmSSSYGSSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLW 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 204 LPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 364 LGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLKeWMFL 443
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILK-SDLL 413

                  ..
gi 2206972897 444 FL 445
Cdd:MTH00150  414 FM 415
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-438 8.30e-119

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 354.43  E-value: 8.30e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWLVHS---LLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITASS 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  78 SVYLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 158 LFSVYSFSNTLYFPLL-FDFGSYYF--MFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 235 MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 315 FCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2206972897 395 TLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLK 438
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILK 444
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
2-444 4.09e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 337.34  E-value: 4.09e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   2 LKYLIMIIFLTPLCLLNSCWWLVHSLLFLMSFVFMIFVYSYCDL--NMISYFFGVDYFSFSLILLSFWICSLMITASSSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLmtSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  80 YLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 160 SVYSFSNTLYFPLLFDFGSYYFMFYVFII---LAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 237 VISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 317 LSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 2206972897 397 YMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLKEWMFLF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-438 5.76e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 337.17  E-value: 5.76e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLL---NSCW--WLVHSLLfLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITA 75
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLskpKFLWtnTTTYSLL-IALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  76 S----SSVYLSSYHFNLFVFIVLFLLIMLycSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIAS 151
Cdd:MTH00124   80 SqnhlQHEPLQRKRTFLTTLILLQTFLIL--AFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 152 LPLLLVLFSVYSFSNTLYFPLLFDFGSY------YFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLK 225
Cdd:MTH00124  158 LPLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 226 LGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMI 305
Cdd:MTH00124  238 LGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMI 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLI 385
Cdd:MTH00124  318 AHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTG 397
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2206972897 386 FLSFFSAVYTLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLK 438
Cdd:MTH00124  398 LATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILK 450
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-438 6.41e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 316.47  E-value: 6.41e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWL-----VHSLlFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITA 75
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLwtlttTNSL-IIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  76 SSSvYLSSYHFN---LFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASL 152
Cdd:MTH00068   80 SQN-HLKNEPINrqrTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 153 PLLLVLFSVYSFSNTLYFPLLFDFGSYYFM------FYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00068  159 PLLIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 227 GGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIG 306
Cdd:MTH00068  239 GGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMIS 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIF 386
Cdd:MTH00068  319 HGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGL 398
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2206972897 387 LSFFSAVYTLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLK 438
Cdd:MTH00068  399 GTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILK 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
8-432 3.10e-102

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 312.30  E-value: 3.10e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   8 IIFLTPLCLLNSCWWLVHSLLFLMSFV--FMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITASSSV--YLSS 83
Cdd:MTH00044   11 IAITSWIVPKNKLWPISISQSSLISLLslFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHlsNNSP 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  84 YHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYS 163
Cdd:MTH00044   91 NNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYS 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 164 FSNTLYFPLLF------DFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00044  171 SSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINL 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 238 ISYLGMKF-NFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFC 316
Cdd:MTH00044  251 FSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFC 330
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 317 LSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTL 396
Cdd:MTH00044  331 LANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSL 410
                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 2206972897 397 YMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPL 432
Cdd:MTH00044  411 LIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-437 4.06e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 301.81  E-value: 4.06e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWL-----VHSLLFLMSFVFMIFVYSYCDLNMISYFFgVDYFSFSLILLSFWICSLMITA 75
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  76 SSSvYLSSYHFN---LFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASL 152
Cdd:MTH00110   80 SQH-HLSKEPLTrkkLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 153 PLLLVLFSVYSFSNTLYFPL-------LFDFGSYYFMFYVfIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLK 225
Cdd:MTH00110  159 PLLVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLA-CMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 226 LGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMI 305
Cdd:MTH00110  238 LGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMI 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLI 385
Cdd:MTH00110  318 AHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMG 397
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2206972897 386 FLSFFSAVYTLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCL 437
Cdd:MTH00110  398 LNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
5-432 9.32e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 284.91  E-value: 9.32e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   5 LIMIIFLTPLCLLNSCWWLVHSLLFLMSFVFMIFVYSYCDLNMIS--YFFGVDYFSFSLILLSFWICSLMITASSSVYLS 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  83 SYHFN--LFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFS 160
Cdd:MTH00206   86 EPINRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 161 VYSFSNTLYFPLL---FDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 238 ISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 318 SNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 2206972897 398 MYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPL 432
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-438 6.38e-85

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 267.59  E-value: 6.38e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWL-----VHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  76 SSSVYLSSYHFNLFVFIVLF--LLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 154 LLLVLFSVYSFSNTL------YFPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 228 GYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2206972897 388 SFFSAVYTLYMYSYSQHGSFYSGVYTYSLGYFREYHLLFLHWFPLNILCLK 438
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILK 451
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
48-399 1.29e-56

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 194.53  E-value: 1.29e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASSSVylSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 128 LGWGYqPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL------FDFGSYYFMFYVFIIlAFLVKMPMFFVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 202 LWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisyLGM------KFNFFLLSLSLFGGVIISFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2206972897 356 AAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-388 4.90e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 182.13  E-value: 4.90e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINFMPSMSL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2206972897 346 WWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
51-399 1.98e-50

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 177.95  E-value: 1.98e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  51 FFGVDYFSFSLILLSFWICSLMITASSSVYlsSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGW 130
Cdd:MTH00204   78 VFAVDGVSLFFILLTTLLIPICILISWKSI--KFLFKEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIW 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 131 GYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTL-YFPLLFDFGSYYFMFYVFI--ILAFLVKMPMFFVHLWLPSA 207
Cdd:MTH00204  156 GSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQA 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 208 HVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMK-FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:MTH00204  236 HVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEyFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 287 GGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGE 366
Cdd:MTH00204  316 LGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGE 395
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2206972897 367 FSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:MTH00204  396 FFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
48-399 9.48e-50

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 176.16  E-value: 9.48e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASSSV---YLSSYHFNLfvfivLFLLIMLYCSFSSLSLLSFYIFFESSLIPTL 124
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEikkRVKFYMAAL-----LWLEGGVIGVFAALDLLLFYVFFEAMLIPMY 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 125 CLILGWGYqPERLQAGLYLIFYTLIASLPLLLVLFSVY--------SFSNTLYFPLLFDFGSYYFMFYVFIIlAFLVKMP 196
Cdd:PRK05846  149 FLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVvvyynatgTFDIADLLNLPLPPGVQYWLFLAFFI-AFAVKMP 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 197 MFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisyLGM------KFNFFLLSLSLFGGVIISFICFRQVDL 270
Cdd:PRK05846  227 MFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDI 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 271 KSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLL 350
Cdd:PRK05846  302 KKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFF 381
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 2206972897 351 SSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:PRK05846  382 AMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
51-399 1.43e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 175.63  E-value: 1.43e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  51 FFGVDYFS-FSLILLSFWICSLMITASSSVylsSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILG 129
Cdd:MTH00217   75 VFAVDGISiFFLILTALLTPICILISWNSI---KFLIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 130 WGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL----FDFGSYYFMFYVFIiLAFLVKMPMFFVHLWLP 205
Cdd:MTH00217  152 WGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLP 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 206 SAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSM 284
Cdd:MTH00217  231 QAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGL 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 285 VIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLL 364
Cdd:MTH00217  311 VTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFV 390
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2206972897 365 GEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:MTH00217  391 GEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
52-397 1.77e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 170.49  E-value: 1.77e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  52 FGVDYFSFSLILLSFWI--CSLMITASSSVYLSSYhfnlFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 130 WGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDF-----GSYYFMFYVFIILAFLVKMPMFFVHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 205 PSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMK-FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
                         330       340       350
                  ....*....|....*....|....*....|....
gi 2206972897 364 LGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLY 397
Cdd:MTH00226  414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 3.92e-46

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 166.27  E-value: 3.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASSSVYLSSYHFNLFVFIVLFLLIMlyCSFSSLSLLSFYIFFESSLIPTLCLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 128 LGWGyQPERLQAGLYLIFYTLIASLPLLLVLFSVY-----SFSNTLYFPLLFDFGSYYFMFYVFIIlAFLVKMPMFFVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYflgggTFDLLELLNLPLPFGVQTWLFLAFFI-AFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMK-FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 282 MSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2206972897 362 NLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
19-419 5.22e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 155.83  E-value: 5.22e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  19 SCWWLVHSLLFLMSFVFMIFvYSYCDLNMISYFFGVDYFSFSLILLsfwicsLMITASSSVYLSSYHFNLfVFIVLFLLI 98
Cdd:MTH00094    2 SLLFFFSPFLFFLFLMFFSF-LMFNNYSWSGLFFFFDSFVFVLLIF------MMVFILGLVLLSEKNFNL-LILSNLLIL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  99 MLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDFGS 178
Cdd:MTH00094   74 ICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEM 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 179 YYFMfyvfiILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKvisYLGMKFNFFLLSLSLFGGV 258
Cdd:MTH00094  154 FFIL-----SLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILG---SLNFVYNNFWIIFSLLGMI 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 259 IISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:MTH00094  226 LSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFS 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 339 FMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMYSYSQHGSFYSGVYTYSLGY 418
Cdd:MTH00094  306 SSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385

                  .
gi 2206972897 419 F 419
Cdd:MTH00094  386 S 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-341 7.67e-30

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 121.29  E-value: 7.67e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  53 GVDYFSFSLILLSFWICSLMITASSSVYLSSyhfNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGY 132
Cdd:PRK12561   56 GVDGLSMPLVLLSGLITTLSIFASWKVTRKP---RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 133 QpERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPL----LFDF-GSYYFMFYVFIILAFLVKMPMFFVHLWLPSA 207
Cdd:PRK12561  133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHTWLPDA 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK12561  212 HGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2206972897 287 GGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMP 341
Cdd:PRK12561  292 LGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-403 4.21e-29

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 118.33  E-value: 4.21e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  52 FGVDYFSFSLILLSFwICSLMITASSSVYLSSYH-FNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGW 130
Cdd:COG0651    72 LVADRLSALFLLLTA-LVALAVLLYSIGYMRHERrGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 131 GYqPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDFGSYY-----FMFYVFIILAFLVKMPMFFVHLWLP 205
Cdd:COG0651   151 GT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALLLVGFGIKAALFPLHFWLP 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 206 SAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMK--FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMS 283
Cdd:COG0651   230 DAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPAlfLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNL 363
Cdd:COG0651   310 YILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGF 389
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2206972897 364 LGEFSLLNSIMSWSSFMF-ILLIFLSFFSAVYTLYMYSYSQ 403
Cdd:COG0651   390 VSKWLLLQAALEAGAWLLaAVLLLSSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-358 2.26e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 108.64  E-value: 2.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  53 GVDYFSFSLILLSFWICSLMITASSSVylsSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 133 QpERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPL----LFDFG-SYYFMFYVFIILAFLVKMPMFFVHLWLPSA 207
Cdd:PRK02546  161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK02546  240 HGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2206972897 287 GGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAP 358
Cdd:PRK02546  320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
44-393 3.83e-23

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 101.56  E-value: 3.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  44 DLNMISYF-----FGVDYFSFSLILLSFWICSLMITASSSVYLSSyhfNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFES 118
Cdd:CHL00011   67 DYKWINFFdfhwrLGIDGLSIGPILLTGFITTLATLAAWPVTRNS---RLFYFLMLAMYSGQIGLFSSRDLLLFFIMWEL 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 119 SLIPTLCLILGWGYQpERLQAGLYLIFYTLIASLPLLLVLFSVYSFSN---TLYFPLLFDfGSYYF----MFYVFIILAF 191
Cdd:CHL00011  144 ELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSnepTLNFETLAN-QSYPValeiLFYIGFLIAY 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 192 LVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDL 270
Cdd:CHL00011  222 AVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNL 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 271 KSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLL 350
Cdd:CHL00011  302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSF 381
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2206972897 351 SSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAV 393
Cdd:CHL00011  382 SMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 4.17e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 95.54  E-value: 4.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSFWICSLMITASS-SVYLSSYHFNLfvfiVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCL 126
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSDeSIQRPRFYYSL----LLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLL 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 127 ILGWGYQpERLQAGLYLIFYTLIASLPLL---LVLFSVYSFSNTLYFPLLFDF--GSYYFMFYVFIILAFLVKMPMFFVH 201
Cdd:PRK06473  147 IAIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFH 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 202 LWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVA 280
Cdd:PRK06473  226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFgVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIG 305
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2206972897 281 HMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  306 HMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-401 1.62e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 90.71  E-value: 1.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLIlGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL---FDFGSYYFMFYVFIIL 189
Cdd:PRK08375  132 FVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagaLAENPTVVTAFGFVLL 210
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 190 AFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SYLGMKFNFFLLSLSLFGGVIISFICF 265
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAAL 290
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSL 345
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2206972897 346 WWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFL-SFFSAVYTLYMYSY 401
Cdd:PRK08375  371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLAsSLLALLYFLRIWYR 427
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
26-390 7.78e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 84.97  E-value: 7.78e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  26 SLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWIC-SLMITASSSVYLSSyhfNLFVFIVLFLLIMLYCSF 104
Cdd:MTH00062   15 LLLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLVLFLGlYSQVMFYNLLSGVS---RFFLFLSLIFSILCFCVN 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 105 SSLSLlsfYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDFGSYYFMFY 184
Cdd:MTH00062   92 NSLLF---WFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVY 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 185 VFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLgmkFNFFLLSLSLFGGVIISFIC 264
Cdd:MTH00062  169 YVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSG---SFLGYLFLCCLFSVFFLITA 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMS 344
Cdd:MTH00062  246 CSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLR 325
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2206972897 345 LWWFLLSSSNMAAPPSLNLLGEFSLLNSimswSSFMFILLIFLSFF 390
Cdd:MTH00062  326 VIVVFSFLSLCSFPPTIQFFCEVFLVSS----SFGVLVYLLFWCFY 367
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
184-394 7.64e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 82.67  E-value: 7.64e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 184 YVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVmKVISYLGMKFNF---FLLSLSLFGGVII 260
Cdd:PRK06458  217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRY-YILIDAAIGSDFpgrLLLIFGLLSVLVA 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFM 340
Cdd:PRK06458  296 AFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVS 375
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2206972897 341 PSMSlWWFLLSSSNMA-APPSLNLLGEFSLLNSIMS----WSSFMFILLIFLSFFSAVY 394
Cdd:PRK06458  376 PLTG-WGLMLGALAIAgMPPFGVFISEFLILTAGLArgplLIAILLLLLLTLAFAALVR 433
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-394 1.19e-16

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 82.07  E-value: 1.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  48 ISYFFGVDYFSFSLILLSfwiCSLMITASSSVYLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 128 LGWGYQpERLQAGLYLIFYTLIASLPLLLVLFSV------YSFSNTLYFPLLFDFGSYYFMFyVFIILAFLVKMPMFFVH 201
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgsTSFDYDAISTQNLSLNTQLILL-TGLLLGFGIKIPLVPLH 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 202 LWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisyLGM---KFNFFLLSLSLFGGVII---SFICFRQVDLKSLIA 275
Cdd:PRK07363  226 TWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTISViygALSAIAQKDIKRMVA 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNM 355
Cdd:PRK07363  301 YSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGM 380
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2206972897 356 AA---PPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVY 394
Cdd:PRK07363  381 ASagiPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVY 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
23-398 2.53e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 81.17  E-value: 2.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  23 LVHSLLFLMSFVFMIFVYSYCdlNMISYFFG-----------VDYFSFSLILLSFWIcSLMITASSSVYLSSYHFNLFVF 91
Cdd:PRK12667   40 LVSLITLILSILLFIQVYSSN--KPIVYLFGgwpapigivyeVDLLGALLGLLTALV-MFLILIYSYWYLEHESGPEWYY 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  92 IVLFLLI--MLYCSFSSLSLLSfYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLY 169
Cdd:PRK12667  117 TLLLGLEagMLGILLTGDAFNL-FVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLN 195
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 170 FPLL------FDFGSYY----------FMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFR 233
Cdd:PRK12667  196 MADLsakirgLSFPLTGglagnpplalGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIR 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 234 VMKVISYLGMK-------FNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIG 306
Cdd:PRK12667  276 FLYTIFGISPSlidfraaLSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIIN 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIF 386
Cdd:PRK12667  356 HAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLL 435
                         410
                  ....*....|..
gi 2206972897 387 LsfFSAVYTLYM 398
Cdd:PRK12667  436 I--ASAISLVGY 445
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
21-393 4.96e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 70.92  E-value: 4.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  21 WWLVHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDyFSFSLILLSFWICSLMITASSSVYLSSYHFN-----------LF 89
Cdd:PRK08667   36 WLVIAIALLLFAGSLQLFTGNPLDIPLWGIAPGLD-ITFHIDRLAAFFIILIGLVSLCVAIYSLGYNehmssneranlLS 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  90 VFIVLFLLIMLYCSFSSLSLLSFyIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLY 169
Cdd:PRK08667  115 ALTALFILSMLGVVASANTFSFL-FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFE 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 170 FPLLFDFGSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFL 249
Cdd:PRK08667  194 LSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLI 273
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 250 LSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLM-----------IGHGLCSSGLFCLS 318
Cdd:PRK08667  274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTA 353
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 319 NIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSS--------FMFILLIFLSFF 390
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSvadplikiLLFSVLAIFALT 433

                  ...
gi 2206972897 391 SAV 393
Cdd:PRK08667  434 SAL 436
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
26-341 2.46e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 68.87  E-value: 2.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  26 SLLFLMSFVFMIFVYSYCDLNMISYFFGVdYFSFSLILLSFWICSLMITASSSVYLSSYH------FNLFVfivLFLLIM 99
Cdd:PRK08668   35 PLLFLIKLYFTLKVGTGEKLTLFFGGFKL-TFTLTHLSWFFAMISLLVIFSVAFFMVSEKtkndayFNMFA---LMSLAG 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 100 LYCSFSSLSLLSFYIFFESSLIPTLCLILgWGYQPERLQAGLYLIFyTLIASLPLLLVLFSVYSFSNTLYFPLLFDF--- 176
Cdd:PRK08668  111 VLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADISQGlin 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 177 ---GSYYFMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGM---------- 243
Cdd:PRK08668  189 dtsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgv 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 244 -KFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK08668  269 pLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVI 348
                         330
                  ....*....|....*....
gi 2206972897 323 ERLGSRSLLINKGMINFMP 341
Cdd:PRK08668  349 YRTGTTKISEMGGLIEKMP 367
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
181-399 3.12e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 68.24  E-value: 3.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 181 FMFYVFIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SYLGMKFNFFLLSLSLFGGV 258
Cdd:PRK08676  206 GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIA 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 259 IISFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFR 365
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2206972897 339 FMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTLYMY 399
Cdd:PRK08676  366 LQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-324 4.75e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.59  E-value: 4.75e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLIlGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDFGSYYFmfyVFIILAFL 192
Cdd:PRK07234  120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAF---ALIALGLL 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 193 VKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGgviiSFICFRQVDLKS 272
Cdd:PRK07234  196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2206972897 273 LIAYSSVAHMSMVIGGlmtmnwwGCMGSLsLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 4.29e-10

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 56.76  E-value: 4.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897   1 MLKYLIMIIFLTPLCLLNSCWWL-----VHSLLFLMSFVFMIFVYSYCDLNMISYFFGVDYFSFSLILLSFWICSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100
                  ....*....|....*....|....*....
gi 2206972897  76 SSSVYLSSYHFN--LFVFIVLFLLIMLYC 102
Cdd:pfam01059  81 SQKHLKSEPNNRqrTFIFLLILLQLFLIL 109
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
186-395 4.76e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 61.29  E-value: 4.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 186 FIILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-----SYLGMKFNFFLLSLSLFGGVII 260
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFM 340
Cdd:PRK12662  294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2206972897 341 PSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIMSwSSFMFILLIFL--SFFSAVYT 395
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK-SNAWIGLVVLLvgSGLSVIYV 429
PRK12646 PRK12646
DUF4040 family protein;
80-398 2.95e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 59.38  E-value: 2.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  80 YLSSYHFNL---FVFIVLFLLIMLyCSFSSLSLLSFYIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLL 156
Cdd:PRK12646  101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 157 VLFSVYSFSNTLYFPLLF-------DFGSYYFMFYVFIILAFlVKMPMFFVHLWLPSAhVEAPISGSMIL-AGVLLKLGG 228
Cdd:PRK12646  180 GFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGI 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 229 YGIFRVMKVISYLGMkFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSLSL 303
Cdd:PRK12646  258 FLLFRFTPLLGLSNM-YIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYV 336
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 304 MI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLwWFLLSSSNMAAPPSLN--LLGE--FSLL 370
Cdd:PRK12646  337 FVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNgfLSKEmfLDAL 415
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2206972897 371 NSIMSWSSFMFILLIFL-------SFFSAVYTLYM 398
Cdd:PRK12646  416 TQTGQLSQFSLISMIIIvfigviaSIFTFTYALYM 450
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
187-394 1.19e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 54.00  E-value: 1.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IILAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNF--FLLSLSLFGGVIISFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVlkLVIIMATLTVFFAELSA 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMS 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2206972897 345 LWWFLLSSSNMAAPPSLNLLGEFS-LLNSIMSWSSFMFILLIFLSFFSAVY 394
Cdd:PRK08377  372 LALTIGALSTVGIPLFNVFWSKFRiILAGLSAGYTWPVALVLGASVVEAVY 422
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-398 1.96e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.18  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYTLIASLPLLL---VLFSVYSFSNTLYFPLLFDFGSYYF--MFYVFI 187
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLgiaLLYGQYGTLNMAYLAVKMSENPTVVakIALALF 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 188 ILAFLVKMPMFFVHLWLPSAHVEAPISGSMILagVLLKLGG-YGIFRVmkVISYLGMKFN--------FFLLSLSLFGGV 258
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINlatvgwviIILGCLTMFVGV 302
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 259 IISFIcfrQVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLSLMIGHGLCSSGLFCLSNIIYERLG 326
Cdd:PRK08376  303 AMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYETG 379
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2206972897 327 SRSLLINKGMINFMPsMSLWWFLLSSSNMAAPPSLN------LLGEFS-LLNSIMSWSSFMFILLIFLSFFSAVYTLYM 398
Cdd:PRK08376  380 TRNLNELGGLARTMP-KTTIAFLIGAAAIVGLPPFNgfaskwLIYESSaLFNPILGVIAMIGSVLTLASFVKVFHTAFF 457
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
188-362 2.75e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 52.97  E-value: 2.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 188 ILAFL---VKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISYLGMK---FNFFLLSLSLFG---GV 258
Cdd:PRK06521  214 LLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGAPgwwWGVLVLALGAISavlGV 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 259 IISFIcfrQVDLKSLIAYSSVAHMSMVIGGL-MTM----NWWGCMGSLSLM------IGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK06521  292 LYALA---EHDLKRLLAYSTIENIGIIFVGLgLAMvfiaYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGT 368
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2206972897 328 RSLLINKGMINFMPSMSlWWFLLSSSNMAAPPSLN 362
Cdd:PRK06521  369 RDMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-396 3.79e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.13  E-value: 3.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  59 FSLILLSFWICSLMITASSSVYLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLIlGWGYQPERLQ 138
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 139 AGLYLIFYTLIASLPLLL-VLFSVYSFSNTLYF--PLLFDFGSYYFMFYVFIILafLVKMPMFFVHLWLPSAHVEAPISG 215
Cdd:PRK06589  167 GGYKYLKILMISALLLFLpAVILIYTKTGNLDFvsGGLFSKNQSIILLLMFIYG--IAKTAIFPVHSWLPAAMVAHYPVS 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 216 SMILAGVLLKLGGYGIFRVMKVI---SYLGMKFNFF--LLSLSLFGGVIISFICFRQVDLKSLIAYSSVAHMSMVIGGLM 290
Cdd:PRK06589  245 ALLHAVIVVKTGLFCIYKILLYIfglSYLQRIFAEFnwLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAF 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 291 TMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLL 370
Cdd:PRK06589  325 ILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLIL 404
                         330       340       350
                  ....*....|....*....|....*....|.
gi 2206972897 371 -----NSIMSWSSFMFILLIFLSFFSAVYTL 396
Cdd:PRK06589  405 laaseQNQPWLSIIVMLVVIASSILSALYLL 435
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-365 1.86e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.97  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLiLGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL------FDFGSYYFMFYVF 186
Cdd:PRK12665  137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldeLPSGTRTALFAVL 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IIlAFLVKMPMFFVHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsYLGMKFNFFLLSLSLFGGVIISFICFR 266
Cdd:PRK12665  216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLW 346
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373
                         250
                  ....*....|....*....
gi 2206972897 347 WFLlsssnmaapPSLNLLG 365
Cdd:PRK12665  374 FFV---------PALNLGG 383
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-388 3.02e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 49.56  E-value: 3.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  52 FGVDYFSFSLILLSFWICSLMITASSSVYLSSYHFNLFVFIVLFLLIMLYCSFSSLSLLSFYIFFESSLIPTLCLILGWG 131
Cdd:PRK07691   73 FVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 132 YQPErLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLF---------DFGSYYFMFYVFIILaFLVKMPMFFVHL 202
Cdd:PRK07691  153 TKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFPLYF 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNF----FLLSLSLFGGVIISficFRQVDLKSLIAYSS 278
Cdd:PRK07691  231 WLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHylilILALLTIIFGVIGA---VAYFDIKKIIIYNI 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 279 VAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSlWWFLLSSSNMAA- 357
Cdd:PRK07691  308 MIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGi 386
                         330       340       350
                  ....*....|....*....|....*....|.
gi 2206972897 358 PPSLNLLGEFSLLNSIMSWSSFMFILLIFLS 388
Cdd:PRK07691  387 PPLSGFYGKFFIVEGTFEAGFYVSGIIVLLS 417
PRK12650 PRK12650
DUF4040 family protein;
185-401 1.37e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 47.73  E-value: 1.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 185 VFIILAFLVKMPMFFVHLWLPSAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKVISYLgmkfnffLLSLSLFGGV 258
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAVWNWL-------LIIVGMITAL 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 259 IISFICFRQVDLKSLIAYSSVAHMsmviGGLMTMNWWGCMGSLSLMI----GHGLCSSGLFCLSNIIYERLGSRSLLINK 334
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQL----GWIVATIGVGTPFALTAAVvhtlAHALFKSSLFMLIGVVDHQAGTRDIRRLG 360
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 335 GMINFMPsMSLWWFLLSSSNMAA-PPSLNLLGEFSLLNSIMS--WSSFMFILLIFLSFFSAVYTlYMYSY 401
Cdd:PRK12650  361 SLWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGMLTAFLEapGGNAGVVLLLVGAALGAVFT-FAYSA 428
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
200-362 4.13e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.89  E-value: 4.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 200 VHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVDLKSLIAYSSV 279
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTL 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 280 AHMSMVIGGL-----------MTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLwWF 348
Cdd:PRK08042  279 ENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI-AM 357
                         170
                  ....*....|....
gi 2206972897 349 LLSSSNMAAPPSLN 362
Cdd:PRK08042  358 LVGLMAMAALPPLN 371
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
114-359 3.68e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.57  E-value: 3.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 114 IFFEsslIPTLCL--ILGWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDF-GSYYFMFYVFIILA 190
Cdd:PRK06525  140 LFFE---ITGLCSwaLISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLhGSLKYLVFLGILFA 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 191 FLVKMPMFFVHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVIISFICFRQVD 269
Cdd:PRK06525  217 AWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQD 295
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 270 LKSLIAYSSVAHMSMVIGGLMTM---NWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSLW 346
Cdd:PRK06525  296 MKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVG 375
                         250
                  ....*....|...
gi 2206972897 347 WFLLSSSNMAAPP 359
Cdd:PRK06525  376 FCVAALAITGVPP 388
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
113-292 4.90e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.43  E-value: 4.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLILGWGYQPERLQAGLYLIFYT------LIASLPLLLVLFSVYSFSNTLYFPLLFDFGSYYFMFYVF 186
Cdd:PRK12649  137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IILAFL---VKMPMFFVHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVISylGMKFNFFLLS-LSLFGGVIIS 261
Cdd:PRK12649  217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAG 293
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2206972897 262 FICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649  294 FLAFRQTDIKAILAYSTISQLAY----LMTM 320
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
52-388 6.33e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.13  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897  52 FGVDyFSFSLILLSFWICsLMIT-------ASSSVYLSSYHF--NLFVFIVLFLLIMLyCSFSSLSLLSFYIFFESSLIP 122
Cdd:PRK12647   54 LGVN-LSFLLDGLSLTFA-LLITgigtlivLYAGGYLKGHPDlgRFYSYILLFMASML-GLVLSDNLITLFVFWELTSIT 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 123 TLCLIlgwGYQPERLQA---GLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLLFDFG------SYYFMFYVFIILAFLV 193
Cdd:PRK12647  131 SFLLI---GFNHEREAArraALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPLYLAILLLVLGGAFT 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 194 KMPMFFVHLWLPSAhVEAPI-------SGSMILAGVllklggygifrvmkvisYLGMKFNFFL-------LSLSLFGGVI 259
Cdd:PRK12647  208 KSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGI-----------------YLLARLNPVLggtplwqTILPLFGGLT 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 260 I---SFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGCMGSLS----LMIGHGLCSSGLFCLSNIIYERLGSRSLLI 332
Cdd:PRK12647  270 MltgALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSELAIKaavlFLVAHSLYKGALFMVAGIIDHETGTRDITK 345
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2206972897 333 NKGMINFMPSMSLWWFLLSSSNMAAPPSLNLLGEFSLLNSIM---SWSSFmFILLIFLS 388
Cdd:PRK12647  346 LGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLeapLWSLI-LTVAAVLG 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-396 6.92e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.78  E-value: 6.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 113 YIFFESSLIPTLCLILgWGYQPERLQAGLYLIFYTLIASLPLLLVLFSVYSFSNTLYFPLL------FDFGSYYFMFYVF 186
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 187 IILAFLVKMPMFFVHlWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISYLGMKFNFFLLSLSLFGGVII-SFICF 265
Cdd:PRK12663  213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIgALGAL 291
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206972897 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINFMPSMSL 345
Cdd:PRK12663  292 AYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGA 371
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2206972897 346 WWFLLSSSNMAAPPSLNLLGEFSLLNSIMSWSSFMFILLIFLSFFSAVYTL 396
Cdd:PRK12663  372 LFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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