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Conserved domains on  [gi|2209258681|ref|YP_010299177|]
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hypothetical protein MPI97_gp39 [Pseudomonas phage YMC12/01/R960]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FluMu_N super family cl39361
Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like ...
 40-79 8.29e-05

Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.


The actual alignment was detected with superfamily member pfam17891:

Pssm-ID: 436122  Cd Length: 49  Bit Score: 36.94  E-value: 8.29e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2209258681  40 FRRAGFAFTSeGIGIaLSALTEAQLKALKEEPQLRVESCE 79
Cdd:pfam17891  11 YRRAGFALPR-GDNT-LPDVTAAQLAQLKADPRLVVKIIE 48
 
Name Accession Description Interval E-value
FluMu_N pfam17891
Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like ...
 40-79 8.29e-05

Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.


Pssm-ID: 436122  Cd Length: 49  Bit Score: 36.94  E-value: 8.29e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2209258681  40 FRRAGFAFTSeGIGIaLSALTEAQLKALKEEPQLRVESCE 79
Cdd:pfam17891  11 YRRAGFALPR-GDNT-LPDVTAAQLAQLKADPRLVVKIIE 48
 
Name Accession Description Interval E-value
FluMu_N pfam17891
Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like ...
 40-79 8.29e-05

Mu-like prophage FluMu N-terminal domain; Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.


Pssm-ID: 436122  Cd Length: 49  Bit Score: 36.94  E-value: 8.29e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2209258681  40 FRRAGFAFTSeGIGIaLSALTEAQLKALKEEPQLRVESCE 79
Cdd:pfam17891  11 YRRAGFALPR-GDNT-LPDVTAAQLAQLKADPRLVVKIIE 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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