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Conserved domains on  [gi|2252659627|ref|YP_010410322|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Haplotropis brunneriana]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.35e-41

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 132.98  E-value: 1.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   3 TLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659627  83 SSNLMIWTSATMFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.35e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 132.98  E-value: 1.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   3 TLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659627  83 SSNLMIWTSATMFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.35e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.41  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  19 MSLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLMIWTSAtMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 2252659627  99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 1.55e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   8 FMISFLVPMLVMSLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                          90       100
                  ....*....|....*....|....*...
gi 2252659627  88 IWTSAtMFFIMVLLGGLYHEWNQGALQW 115
Cdd:COG0838    91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.35e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 132.98  E-value: 1.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   3 TLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659627  83 SSNLMIWTSATMFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 7.93e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.13  E-value: 7.93e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2252659627  81 LKSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 8.48e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 123.56  E-value: 8.48e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2252659627  81 LKSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 4.84e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 114.19  E-value: 4.84e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2252659627  81 LKSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 2.41e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 101.94  E-value: 2.41e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   2 MTLSMSFMISFLVPMLVMSLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIIL 81
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2252659627  82 KSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.23e-27

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 97.74  E-value: 1.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMSFMISFLVPMLVMSLATILSKKIInDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2252659627  81 LKSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 3.89e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 96.49  E-value: 3.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMsFMISFLVPMLVMSLATILSKkIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00113    1 MNLISM-LTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2252659627  81 LKSSNLMIWTSATMFFIMVLLGGLYHEWNQGALQWA 116
Cdd:MTH00113   79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-117 1.17e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 95.37  E-value: 1.17e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPI---VIILKSSNLMIWTSAtmffIMVLLG-GLYHE 107
Cdd:MTH00136   31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgDQLPSPLLTFFWATA----VLILLTlGLIYE 106

                          90
                  ....*....|
gi 2252659627 108 WNQGALQWAE 117
Cdd:MTH00136  107 WLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.35e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.41  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  19 MSLATILSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLMIWTSAtMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 2252659627  99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-115 1.58e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 92.27  E-value: 1.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   2 MTLSMSFMISFLVPMLVMSLATILSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIIL 81
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2252659627  82 KSSNLMIWtsATMFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00203   81 QLSSLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 6.52e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 90.82  E-value: 6.52e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  16 MLVMSLATILSKKIIN----------DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPI---VIILK 82
Cdd:MTH00069    3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659627  83 SSNLMIWtsATMFFIMVLLGGLYhEWNQGALQWAE 117
Cdd:MTH00069   83 PTNTLFW--STLILILLTLGLIY-EWIQGGLEWAE 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 1.55e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   8 FMISFLVPMLVMSLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                          90       100
                  ....*....|....*....|....*...
gi 2252659627  88 IWTSAtMFFIMVLLGGLYHEWNQGALQW 115
Cdd:COG0838    91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 2.64e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 84.15  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   8 FMISFLVPMLVMSLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWL 93

                          90       100
                  ....*....|....*....|....*....
gi 2252659627  88 IWTSAtMFFIMVLLGGLYHEWNQGALQWA 116
Cdd:PRK06602   94 GFVEA-MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 4.43e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 73.17  E-value: 4.43e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   8 FMISFLVPMLVMSLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:MTH00018    7 LIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPF 85

                          90       100
                  ....*....|....*....|....*....
gi 2252659627  88 -IWTSATMFFIMVLlgGLYHEWNQGALQW 115
Cdd:MTH00018   86 gFWTMVGFLFILTL--GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 3.48e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 71.28  E-value: 3.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLM-IWTsaTMFFIMVLLGGLYHEWNQ 110
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFgFWV--MYLFLIILTIGLIYEWVK 112


                  ....*
gi 2252659627 111 GALQW 115
Cdd:MTH00055  113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 2.15e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.88  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   3 TLSMSFMISFLVPMLVMSLATILSKKIIN----DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIV 78
Cdd:MTH00030    7 TIFFSTLLGVGIILLLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2252659627  79 IILKSSNLM-IWTSATmfFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00030   87 IVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
10-115 1.73e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.97  E-value: 1.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  10 ISFLVPMLVMSLATILSKKIINDrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLMIW 89
Cdd:PRK07756   18 LGILLPVVALTLGRMLRPNKPSA-AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFAL 96

                          90       100
                  ....*....|....*....|....*.
gi 2252659627  90 TSATMFFIMVLLGGLYhEWNQGALQW 115
Cdd:PRK07756   97 IEMLIFVVMLLVGLAY-AWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
8-115 2.36e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.51  E-value: 2.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   8 FMISFLVPMLVMSLATILSKKIIN---DREKSSPFECGFDP-KSSARMpfSLRFFLIAVIFLIFDIEIALILPIVIILKs 83
Cdd:PRK08489   17 LVLTFVAFFLTTRLARFISRKLAQkntEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFK- 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2252659627  84 sNLMIWTSATMF-FIMVLLGGLYHEWNQGALQW 115
Cdd:PRK08489   94 -LLGLFGLIEMLlFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 6.89e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.97  E-value: 6.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  32 DREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLMIWTSATMFFIMVLLGGLYhEWN 109
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAY-VWR 112


                  ....*.
gi 2252659627 110 QGALQW 115
Cdd:PRK07928  113 RGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.45e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.34  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627   1 MMTLSMSFMISFLVPMLVMSLATILSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2252659627  81 LKSSNLMIWtsatmFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00092   80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 4.29e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.18  E-value: 4.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  26 SKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVI-ILKSSNLMIWtsatMFFIMVLLGGL 104
Cdd:MTH00060   28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFqGLLFYNFWYY----YFFLLLLFLGF 103

                          90
                  ....*....|.
gi 2252659627 105 YHEWNQGALQW 115
Cdd:MTH00060  104 VVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 8.02e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 36.71  E-value: 8.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252659627  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDIEIALILPIVIILKSSNLMIWTSATMFFIMVLLgGLYHEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLF-AVYYAFKMG 138


                  ....
gi 2252659627 112 ALQW 115
Cdd:PRK06432  139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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