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Conserved domains on  [gi|2431500952|ref|YP_010602066|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Ocellarnaca braueri]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 26-115 1.34e-40

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 130.28  E-value: 1.34e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLY 105
Cdd:MTH00161   24 SKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLY 103

                          90
                  ....*....|
gi 2431500952 106 HEWNQGALEW 115
Cdd:MTH00161  104 YEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 26-115 1.34e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 130.28  E-value: 1.34e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLY 105
Cdd:MTH00161   24 SKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLY 103

                          90
                  ....*....|
gi 2431500952 106 HEWNQGALEW 115
Cdd:MTH00161  104 YEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 8.36e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.80  E-value: 8.36e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYwSNLMSWTLITILFLMILLIGLYHEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 2431500952 112 ALE 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 5.53e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 5.53e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYwsNLMSWTLITIL-FLMILLIGLYHEWNQ 110
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFR--ELGWFGLIEMLvFIAILLVGLIYAWKK 112


                  ....*
gi 2431500952 111 GALEW 115
Cdd:COG0838   113 GALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 26-115 1.34e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 130.28  E-value: 1.34e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLY 105
Cdd:MTH00161   24 SKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLY 103

                          90
                  ....*....|
gi 2431500952 106 HEWNQGALEW 115
Cdd:MTH00161  104 YEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 26-117 4.31e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 126.90  E-value: 4.31e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLY 105
Cdd:MTH00148   26 SKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLF 105

                          90
                  ....*....|..
gi 2431500952 106 HEWNQGALEWAS 117
Cdd:MTH00148  106 HEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 26-116 1.09e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 115.47  E-value: 1.09e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLY 105
Cdd:MTH00202   26 SFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLI 105

                          90
                  ....*....|.
gi 2431500952 106 HEWNQGALEWA 116
Cdd:MTH00202  106 HEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 28-117 1.97e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 109.95  E-value: 1.97e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  28 KSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLYHE 107
Cdd:MTH00012   28 RSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHE 107

                          90
                  ....*....|
gi 2431500952 108 WNQGALEWAS 117
Cdd:MTH00012  108 WREGSLDWSS 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-116 1.68e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 102.30  E-value: 1.68e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPtiiiFYWSNLMSWTLITILF----LMILLIGLYHE 107
Cdd:MTH00136   31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLP----LPWGDQLPSPLLTFFWatavLILLTLGLIYE 106


                  ....*....
gi 2431500952 108 WNQGALEWA 116
Cdd:MTH00136  107 WLQGGLEWA 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-116 4.73e-29

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 101.21  E-value: 4.73e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLYHEWNQG 111
Cdd:MTH00042   31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110


                  ....*
gi 2431500952 112 ALEWA 116
Cdd:MTH00042  111 GLEWA 115
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 4.58e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 98.86  E-value: 4.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  34 EKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLYHEWNQGAL 113
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                  ...
gi 2431500952 114 EWA 116
Cdd:MTH00106  112 EWT 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 32-116 8.44e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 98.14  E-value: 8.44e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIiifyWSNLMSWTLITILF----LMILLIGLYHE 107
Cdd:MTH00069   29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP----WASQLNTPTNTLFWstliLILLTLGLIYE 104


                  ....*....
gi 2431500952 108 WNQGALEWA 116
Cdd:MTH00069  105 WIQGGLEWA 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 8.36e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.80  E-value: 8.36e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYwSNLMSWTLITILFLMILLIGLYHEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 2431500952 112 ALE 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 32-116 1.59e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 94.95  E-value: 1.59e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITILFLMILLIGLYHEWNQG 111
Cdd:MTH00113   30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109


                  ....*
gi 2431500952 112 ALEWA 116
Cdd:MTH00113  110 GLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 28-115 6.39e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 90.73  E-value: 6.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  28 KSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPtiiiFYWSNLMSW--TLITILFLMILLIGLY 105
Cdd:MTH00203   27 KVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLP----LPWSNQLSSlsLLLAFLFLILLTLGLI 102

                          90
                  ....*....|
gi 2431500952 106 HEWNQGALEW 115
Cdd:MTH00203  103 YEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 5.53e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 5.53e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYwsNLMSWTLITIL-FLMILLIGLYHEWNQ 110
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFR--ELGWFGLIEMLvFIAILLVGLIYAWKK 112


                  ....*
gi 2431500952 111 GALEW 115
Cdd:COG0838   113 GALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-116 4.74e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.06  E-value: 4.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLITIlFLMILLIGLYHEWNQG 111
Cdd:PRK06602   38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMI-FILVLLVGLVYLWRKG 116


                  ....*
gi 2431500952 112 ALEWA 116
Cdd:PRK06602  117 ALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 1.47e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 79.75  E-value: 1.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSwTLITILFLMILLIGLYHEWNQG 111
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG-FWVMYLFLIILTIGLIYEWVKG 113


                  ....
gi 2431500952 112 ALEW 115
Cdd:MTH00055  114 GLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 2.42e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 76.64  E-value: 2.42e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLItILFLMILLIGLYHEWNQG 111
Cdd:MTH00018   30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTM-VGFLFILTLGLIYEWIKG 108


                  ....
gi 2431500952 112 ALEW 115
Cdd:MTH00018  109 GLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 7.35e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 73.04  E-value: 7.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWtLITILFLMILLIGLYHEWNQG 111
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSF-WIVYTFLIVLAIGLAYEWIKG 118


                  ....
gi 2431500952 112 ALEW 115
Cdd:MTH00030  119 GLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 2.06e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 58.85  E-value: 2.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  34 EKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWtLITILFLMILLIGLYHEWNQGAL 113
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAF-IEALIFVLILIVGLVYAWRKGAL 117


                  ..
gi 2431500952 114 EW 115
Cdd:CHL00022  118 EW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
31-117 1.03e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.98  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  31 NDREKSSPFECGFDP-KSSARLpfSLRFFLIAVIFLIFDVEIALLLPTIIIFywsNLMSW--TLITILFLMILLIGLYHE 107
Cdd:PRK08489   43 TEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDF---KLLGLfgLIEMLLFIVLLTIGFIYA 117

                          90
                  ....*....|
gi 2431500952 108 WNQGALEWAS 117
Cdd:PRK08489  118 WKKGALEWQS 127
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.27e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 51.67  E-value: 1.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFywSNLMSWTLI-TILFLMILLIGLYHEWNQ 110
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY--DKLGLFALIeMLIFVVMLLVGLAYAWKK 116


                  ....*
gi 2431500952 111 GALEW 115
Cdd:PRK07756  117 KVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 9.11e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 49.28  E-value: 9.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLP--FSLRFFLIAVIFLIFDVEIALLLPTIIIFywSNLMSWTLIT-ILFLMILLIGLYHEW 108
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSF--DALGVFGLVEmALFMLTVFVAYAYVW 111


                  ....*..
gi 2431500952 109 NQGALEW 115
Cdd:PRK07928  112 RRGGLEW 118
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 1.96e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 40.95  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  32 DREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWtLITILFLMILLIGLYHEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMG 138


                  ....
gi 2431500952 112 ALEW 115
Cdd:PRK06432  139 YMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 6.43e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.11  E-value: 6.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  26 SKKSINDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWTLitiLFLMILLIGLY 105
Cdd:MTH00060   28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYNFWYYY---FFLLLLFLGFV 104

                          90
                  ....*....|
gi 2431500952 106 HEWNQGALEW 115
Cdd:MTH00060  105 VELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 31-115 8.67e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 38.72  E-value: 8.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431500952  31 NDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALLLPTIIIFYWSNLMSWtlitiLFLMILLIGLYHEWNQ 110
Cdd:MTH00092   30 FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFF-----MLMIFIFFGFYMEWWY 104


                  ....*
gi 2431500952 111 GALEW 115
Cdd:MTH00092  105 GKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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