|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-337 |
1.47e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 233.18 E-value: 1.47e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 1 MYNNKTSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSN-KNYYANETSIKYFMVQSLASMMLLFSIMMIQM 79
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNkKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 80 KNMMNWddNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMInLLAVILSVTIG 159
Cdd:MTH00160 81 NLMLFN--NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFI-IIIIILSAIIG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 160 AIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMM 239
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 240 MAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMNILLTESKWMTTSMKKSKVMKSSY 319
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
330
....*....|....*...
gi 2473932264 320 LIMLSNMGLTVLSSMNFL 337
Cdd:MTH00160 318 LSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-262 |
1.02e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.98 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 24 SNTWMGVWMGLEINMMAFMPM--LSNKNYYANETSIKYFMVQSLASMMLLFSIMMI-----------QMKNMMNWDDNIK 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLigYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 91 MLLISSSLFM----KIGSAPFQFWLPEVMGMTSWMNCILL-MTWQKIAPMA-------MLSYCMKMNMINLLAVILSVTI 158
Cdd:pfam00361 81 LLLLFLLILVgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 159 GAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETM----WELYFIMYAIMSITM-----AMAFDMNKFYSMNQLFNFNN 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLflcagSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 2473932264 230 ANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-290 |
1.27e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 83.24 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 7 SILFMATLvvGTLVTLSSNTWMGVWMGLEINMMAF--MPMLSNKNYYANETSIKYFMVQSLASMMLLFSIMMI------- 77
Cdd:COG1007 106 ALLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 ---QMKNMMNWDDNIKMLLISSSLFM------KIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML-------SYC 141
Cdd:COG1007 184 nlaGIAAALAAGGANSPLLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaFPG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 142 MKMNMINLLAVI--LSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI-----METMWeLYFIMYAIMSI-----TM 209
Cdd:COG1007 264 LAADWQLLLAVLavLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtplgVSAAL-FYLLAYLFMNLgafavIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 210 AMAFDMNKFYSMNQLFNFNNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLR 289
Cdd:COG1007 343 LLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
.
gi 2473932264 290 V 290
Cdd:COG1007 423 V 423
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-290 |
2.06e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 8 ILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAF--MPMLSNKNYYANETSIKYFMVQSLASMMLLFSIMMI-------- 77
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyvLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 ------QMKNMMNWDDNIKM--LLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML-------SYCM 142
Cdd:TIGR01770 185 fedlllFLSNGMLNISLLLLgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 143 KMNMINLLAVI--LSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI-----METMWeLYFIMYAIMSITMAMAFDM 215
Cdd:TIGR01770 265 SEAWQIFLAIIafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAgtlegIKAVL-FYIFIYALMSLGAFGVLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 216 NKFY------SMNQLFNFNNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLR 289
Cdd:TIGR01770 344 LRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
.
gi 2473932264 290 V 290
Cdd:TIGR01770 424 V 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-337 |
1.47e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 233.18 E-value: 1.47e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 1 MYNNKTSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSN-KNYYANETSIKYFMVQSLASMMLLFSIMMIQM 79
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNkKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 80 KNMMNWddNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMInLLAVILSVTIG 159
Cdd:MTH00160 81 NLMLFN--NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFI-IIIIILSAIIG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 160 AIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMM 239
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 240 MAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMNILLTESKWMTTSMKKSKVMKSSY 319
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
330
....*....|....*...
gi 2473932264 320 LIMLSNMGLTVLSSMNFL 337
Cdd:MTH00160 318 LSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
6-293 |
1.81e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 171.18 E-value: 1.81e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 6 TSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNK-NYYANETSIKYFMVQSLASMMLLFSI----MMIQMK 80
Cdd:MTH00105 5 ILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKhNPRSTEAATKYFLTQATASMLLMMAIiinlMYSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 81 NMMNWDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML---SYCMKMNMINLLAvILSVT 157
Cdd:MTH00105 85 TITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLA-ILSIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 158 IGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMM 237
Cdd:MTH00105 164 IGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSL 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932264 238 MMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFT 293
Cdd:MTH00105 244 ILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-331 |
6.10e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 170.00 E-value: 6.10e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 6 TSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNY-YANETSIKYFMVQSLASMMLLFSIMMIQMkNMMN 84
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHpRATEAATKYFLTQAAASALILFSSTTNAW-NTGQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 85 WD-----DNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML---SYCMKMNMINLLAvILSV 156
Cdd:MTH00112 84 WDitqltNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmtSNSLNPTLLLTLA-ILST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 157 TIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKM 236
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 237 MMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMnilLTESKWMTTSMKK--SKV 314
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYIST---ITLPPNTTNMMMKwrTKP 319
|
330
....*....|....*..
gi 2473932264 315 MKSSYLIMLSNMGLTVL 331
Cdd:MTH00112 320 KKNTLTATLTTLSTLLL 336
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-332 |
1.91e-48 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 165.87 E-value: 1.91e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 3 NNKTSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPML-SNKNYYANETSIKYFMVQSLASMMLLFSIMmIQMKN 81
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILsSNFSPRSVEATIKYFLVQAFSAAILLNGAL-IQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 82 MMNWD-----DNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMINLLAV--IL 154
Cdd:MTH00041 81 SGSWSingplNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcgIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 155 SVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFN 234
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 235 KMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMNILLTESKWMTTSMKKSKV 314
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330
....*....|....*...
gi 2473932264 315 MKSSYLIMLSNMGLTVLS 332
Cdd:MTH00041 321 ITVYGVILSILSSISILG 338
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
6-337 |
3.01e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 157.44 E-value: 3.01e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 6 TSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNY-YANETSIKYFMVQSLASMMLLFSIMM----IQMK 80
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHpRKVEATTKYFIIQATASALLLFGGLLnawtSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 81 NMMNWDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLS--YCMKMNMINLLAVILSVTI 158
Cdd:MTH00200 85 GISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 159 GAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMM 238
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 239 MMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMNILLTESKWMTTSMKKSKVMKS- 317
Cdd:MTH00200 245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLl 324
|
330 340
....*....|....*....|.
gi 2473932264 318 -SYLIMLSNMGLTVLSSMNFL 337
Cdd:MTH00200 325 vGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-337 |
3.16e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 154.69 E-value: 3.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 10 FMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNY-YANETSIKYFMVQSLASMMLLFSIMMIQMKN----MMN 84
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHpRATEAATKYFLTQASASALILFSSTINAWFTgewtIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 85 WDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML---SYCMKMNMINLLAvILSVTIGAI 161
Cdd:MTH00070 89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSNLLIIMG-LLSTLIGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 162 GGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMMMA 241
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 242 MLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTamnILLTESKWMTTS-----MKKSKVMK 316
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA---MSLTTSPNTSNSklywrFKNKTNNL 324
|
330 340
....*....|....*....|.
gi 2473932264 317 SSYLIMLSNMGLTVLSSMNFL 337
Cdd:MTH00070 325 LSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
7-312 |
3.52e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 152.27 E-value: 3.52e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 7 SILFMAtLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNY-YANETSIKYFMVQSLASMMLLFSIM----MIQMKN 81
Cdd:MTH00135 7 TILLFS-LGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHpRAVEATTKYFLTQATAAAMILFASTtnawLTGQWD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 82 MMNWDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLsYCMKMNMINLLAV--ILSVTIG 159
Cdd:MTH00135 86 IQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI-LQIAPTNPTLLITlgLTSTLVG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 160 AIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMM 239
Cdd:MTH00135 165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473932264 240 MAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAM-----NILLTESKWMTTSMKKS 312
Cdd:MTH00135 245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTltispNTLNGTTPWRLPSTQLT 322
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-326 |
3.72e-38 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 138.27 E-value: 3.72e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 9 LFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLS-NKNYYANETSIKYFMVQSLASMMLLFSIMMIQMKNmmnWDD 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSqNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL---YLS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 88 NIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMINLLAVILSVTIGAIGGMNQM 167
Cdd:MTH00197 79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 168 SLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMMMAMLSMGG 247
Cdd:MTH00197 159 NIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGG 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932264 248 MPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMnillTESKWMTTSMKKSKVMKSSYLIMLSNM 326
Cdd:MTH00197 239 LPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSL----ILSNWMINFLMKINLLYSGLFILLMMM 313
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
7-318 |
1.21e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 134.24 E-value: 1.21e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 7 SILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNYYAN-ETSIKYFMVQSLASMMLLFSIMMIQMKNMMNW 85
Cdd:MTH00144 6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSEsESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 86 ddniKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYC---MKMNMINLLAVILSVTIGAIG 162
Cdd:MTH00144 86 ----SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFldlYWLAYLLCVISVLSALVGSIG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 163 GMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLfNFNNANKFNKMMMMMAM 242
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932264 243 LSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMnillTESKWMTTSMKKSKVMKSS 318
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSF----LSSSKSKKSNSSKVLNSSI 312
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
6-297 |
1.42e-33 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 126.43 E-value: 1.42e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 6 TSILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMP-MLSNKNYYANETSIKYFMVQSLASMMLLFSIMMIQMKNMMN 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPlMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 85 wdDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMINLLAVI--LSVTIGAIG 162
Cdd:MTH00011 87 --KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaaMSALAGGLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 163 GMNQMSLRHLMAYSSISHIGWMMSAMMIMETMWELYFIMYAIMSITMAMAFDMNKFYSMNQLFNFNNANKFNKMMMMMAM 242
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2473932264 243 LSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTAMNI 297
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
14-303 |
8.21e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 86.24 E-value: 8.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 14 LVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNK--NYYANETSIKYFMVQSLASMMLLFSIMMI-------------- 77
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNrgSGYSAEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 ---QMKNMMNWDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMINLLAVIL 154
Cdd:MTH00196 82 vlnSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 155 SVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI--METMWE--LYFIMYAIMSI---TMAMAFDMNKFYSMnQLFNF 227
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsFESIQAslVYLFIYIIMSIcvfSIILALNVYKNLII-EFSGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 228 NNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLRVT----FTAMNILLTESK 303
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVkilfFQANSFLLISTK 320
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-262 |
1.02e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.98 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 24 SNTWMGVWMGLEINMMAFMPM--LSNKNYYANETSIKYFMVQSLASMMLLFSIMMI-----------QMKNMMNWDDNIK 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLigYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 91 MLLISSSLFM----KIGSAPFQFWLPEVMGMTSWMNCILL-MTWQKIAPMA-------MLSYCMKMNMINLLAVILSVTI 158
Cdd:pfam00361 81 LLLLFLLILVgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 159 GAIGGMNQMSLRHLMAYSSISHIGWMMSAMMIMETM----WELYFIMYAIMSITM-----AMAFDMNKFYSMNQLFNFNN 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLflcagSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 2473932264 230 ANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-290 |
1.27e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 83.24 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 7 SILFMATLvvGTLVTLSSNTWMGVWMGLEINMMAF--MPMLSNKNYYANETSIKYFMVQSLASMMLLFSIMMI------- 77
Cdd:COG1007 106 ALLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 ---QMKNMMNWDDNIKMLLISSSLFM------KIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML-------SYC 141
Cdd:COG1007 184 nlaGIAAALAAGGANSPLLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaFPG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 142 MKMNMINLLAVI--LSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI-----METMWeLYFIMYAIMSI-----TM 209
Cdd:COG1007 264 LAADWQLLLAVLavLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtplgVSAAL-FYLLAYLFMNLgafavIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 210 AMAFDMNKFYSMNQLFNFNNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLR 289
Cdd:COG1007 343 LLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
.
gi 2473932264 290 V 290
Cdd:COG1007 423 V 423
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-290 |
1.66e-17 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 82.95 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 8 ILFMatlVVGTLVTLSSNTWMGVWMGLEINMMAF--MPMLSNKNYYANETSIKYFMVQSLASMMLLFSIMMI-------- 77
Cdd:PRK05777 109 VLFA---LLGMMVMVSANDLLTLFLGLELLSLPLyaLAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsls 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 --QMKNMMNWDDNIKMLL------ISSSLFMKIGSAPFQFWLPEVMG-----MTSWMNcillmTWQKIAPMAML------ 138
Cdd:PRK05777 186 faGIAKALADGSGNSLLLlfglvfLLVGLAFKLSAVPFHMWTPDVYEgaptpVTAFLA-----TAPKIAAFAVLlrllvv 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 139 ---SYCMKMNMINLLAVILSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI-----METMWeLYFIMYAIMSI--- 207
Cdd:PRK05777 261 afgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAgtaegYSAVL-FYLLAYLFMTLgaf 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 208 TMAMA-----FDMNKFYSMNQLFNFNNANKFNKMMMMMAMLSMggmPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTI 282
Cdd:PRK05777 340 GVISLlrrkgGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGI---PPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAI 416
|
....*...
gi 2473932264 283 VVYYYLRV 290
Cdd:PRK05777 417 GAFYYLRV 424
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-290 |
2.06e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 8 ILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAF--MPMLSNKNYYANETSIKYFMVQSLASMMLLFSIMMI-------- 77
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyvLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 78 ------QMKNMMNWDDNIKM--LLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAML-------SYCM 142
Cdd:TIGR01770 185 fedlllFLSNGMLNISLLLLgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 143 KMNMINLLAVI--LSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI-----METMWeLYFIMYAIMSITMAMAFDM 215
Cdd:TIGR01770 265 SEAWQIFLAIIafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAgtlegIKAVL-FYIFIYALMSLGAFGVLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 216 NKFY------SMNQLFNFNNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVVQYMIDYKMTFTTTIMIMMNTIVVYYYLR 289
Cdd:TIGR01770 344 LRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
.
gi 2473932264 290 V 290
Cdd:TIGR01770 424 V 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-207 |
2.14e-14 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 73.51 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 7 SILFMATLVVGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNK--NYYANETSIKYFMVQSLASMMLLFSI---------M 75
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKrdSAYSTEAGLKYFVLGAVSSGLFLFGCallygltgeT 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 76 MIQMKNMMNWDDnIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMINLLAVILS 155
Cdd:MTH00199 179 SIQGINSILTGD-VGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLS 257
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932264 156 VTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMMI--METMWE--LYFIMYAIMSI 207
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsFESIQAslIYMIIYVIMSI 313
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-185 |
1.66e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 52.55 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 16 VGTLVTLSSNTWMGVWMGLEINMMAFMPMLSNKNYYAN----------ETSIKYFMVQSLASMMLLFSIMM--------- 76
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGShfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 77 ---------IQMKNMMNWDDNIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWMNCILLMTWQKIAPMAMLSYCMKMNMI 147
Cdd:MTH00198 279 mlgtilsatLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190
....*....|....*....|....*....|....*...
gi 2473932264 148 NLLAVILSVTIGAIGGMNQMSLRHLMAYSSISHIGWMM 185
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-260 |
1.63e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 49.71 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 34 LEINMMAFMPMLSNKNY--YANETSIKYFMVQSLASMMLLFSIMM--------------IQMKNMMNWDDNIKMLLISSS 97
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtwEAIEAGIKYMFVGSLASSMVLLGIALlygqygtlnmaylaVKMSENPTVVAKIALALFIAG 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 98 LFMKIGSAPFQFWLPEVMGMT-SWMNCILLMTWQ-KIAPMAMLSYCMKMNMINLLAV--------ILSVTIGAIGGMNQM 167
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAApSSISAMLLVIKQaGLYALARVLFSIYGPAINLATVgwviiilgCLTMFVGVAMAVVQK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 168 SLRHLMAYSSISHIGWMMSAMMI---------METMWEL-----------YFIMYAIMSITMAMAFDMNKFYSMNQLFNF 227
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLGLGVglaalgdpaMASYGEIalaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELGGL 389
|
250 260 270
....*....|....*....|....*....|...
gi 2473932264 228 NNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMV 260
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
56-294 |
4.28e-05 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 45.14 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 56 SIKYFMVQSLASMMLLFSIMMIQMKN-MMNWDD-------------NIKMLLISSSLFMKIGSAPFQFWLPEVMGMTSWM 121
Cdd:COG0651 159 GLKYLILNLVGSALFLLGVGLLYGATgTLNMADlaarlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 122 NCILL---MTwqKIAPMAML---------SYCMKMNMINLLAVILSVTIGAIGGMNQMSLRHLMAYSSISHIGWMMSAMM 189
Cdd:COG0651 239 VSALLsglLT--KVGVYAILrvltllfgaDPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLG 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932264 190 IM-ETMWE---LYFIMYAIMSITMAMAFDM----NKFYSMNQLFNFNNANKFNKMMMMMAMLSMGGMPPFMGFMPKWMVV 261
Cdd:COG0651 317 LGtPLGLAgalFHLLNHALAKALLFLAAGAieraTGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLL 396
|
250 260 270
....*....|....*....|....*....|...
gi 2473932264 262 QYMIDYKMTFTTTIMIMMNTIVVYYYLRVTFTA 294
Cdd:COG0651 397 QAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
|
|
| |
