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Conserved domains on  [gi|2473932307|ref|YP_010735833|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Phytomastax pentaspinula]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-309 7.42e-84

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 257.06  E-value: 7.42e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   1 MHNNSSKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  81 KMTMYwvmNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMlMVIMSAII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLI 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 241 YMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIILTMEMNKWNVK 309
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-309 7.42e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 257.06  E-value: 7.42e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   1 MHNNSSKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  81 KMTMYwvmNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMlMVIMSAII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLI 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 241 YMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIILTMEMNKWNVK 309
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 8.75e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.75e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  24 SYSWMGVWMGLEINMLAFMPLL-SKQHNKLMNETSIKYFIIQALASSMLMMSIILI--------------QMKMTMYWVM 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  89 NDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMN-CLMLMTWQKLAPMTVM-------SYYIKTNVIIMLMVIMSAII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMI----SETLWELYFMIYSTLSILTIMMMN-----QNKLIWLNQMFNSNN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2473932307 232 NNNLNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSS 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-292 8.98e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.87  E-value: 8.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   9 LFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLS-KQHNKLMNETSIKYFIIQALASSMLMMSIILI--------- 78
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgslnl 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  79 -QMKMTMYWVMNDMMTLMISLSLML-----KIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVM---------SYY 143
Cdd:COG1007   186 aGIAAALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 144 IKTNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMI------STMMISETLweLYFMIYSTLSILTIMMmnq 217
Cdd:COG1007   266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlglaagTPLGVSAAL--FYLLAYLFMNLGAFAV--- 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 218 nkLIWLNQMFNSNNNNNLNKYLIY----------MSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLY 287
Cdd:COG1007   341 --ILLLSRKGGEAEEIEDLAGLARrspllalamtIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 2473932307 288 YYLRI 292
Cdd:COG1007   419 YYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-292 2.18e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.47  E-value: 2.18e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  13 FIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLS-KQHNKLMNETSIKYFIIQALASSMLMMSIILI----------QMK 81
Cdd:TIGR01770 110 FALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  82 MTMYWVMND-----MMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLA---PMTVMSYYIKTN------ 147
Cdd:TIGR01770 190 LFLSNGMLNislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawq 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 148 VIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGW-MISTMMISETLWE---LYFMIYSTLSI---LTIMMMNQNKL 220
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafGVLSLLRSYKD 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2473932307 221 IWLNQMFNSNNNNNLNKY---LIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:TIGR01770 350 EWIEYISDFAGLFKTNPIlaiLILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-309 7.42e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 257.06  E-value: 7.42e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   1 MHNNSSKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  81 KMTMYwvmNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMlMVIMSAII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLI 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 241 YMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIILTMEMNKWNVK 309
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-312 1.63e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 197.35  E-value: 1.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   6 SKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIIlIQMKMTMY 85
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSST-TNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  86 WVM----NDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTV--MSYYIKTNVIIMLMVIMSAI 159
Cdd:MTH00112   84 WDItqltNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLllMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 160 IGSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYL 239
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473932307 240 IYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIIL-----TMEMNKWNVKTPQ 312
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppntTNMMMKWRTKPKK 321
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-296 4.83e-59

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 193.61  E-value: 4.83e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   1 MHNNSSkMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIiLIQM 80
Cdd:MTH00041    1 MNRNVL-IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGA-LIQA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  81 KMTMYWV----MNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIK--TNVIIMLMV 154
Cdd:MTH00041   79 WLSGSWSingpLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNllNSNILILCG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 155 IMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNN 234
Cdd:MTH00041  159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2473932307 235 LNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTS 296
Cdd:MTH00041  239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNT 300
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-296 5.81e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 190.83  E-value: 5.81e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIIlIQMKMTMYWV 87
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAII-INLMYSGQWT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  88 M----NDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVM---SYYIKTNvIIMLMVIMSAII 160
Cdd:MTH00105   86 ItkltNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPN-LLLTLAILSILI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLI 240
Cdd:MTH00105  165 GGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLI 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932307 241 YMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTS 296
Cdd:MTH00105  245 LLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYST 300
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 8-311 2.65e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 186.55  E-value: 2.65e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILiQMKMTMYWV 87
Cdd:MTH00135    7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTT-NAWLTGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  88 MNDMM----TLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTN-VIIMLMVIMSAIIGS 162
Cdd:MTH00135   86 IQQMShplpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLLITLGLTSTLVGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 163 LGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLIYM 242
Cdd:MTH00135  166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 243 SMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTsIILTMEMNKWNVKTP 311
Cdd:MTH00135  246 ILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA-MTLTISPNTLNGTTP 313
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 8-310 8.46e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 174.72  E-value: 8.46e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMKM---TM 84
Cdd:MTH00070    7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgewTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  85 YWVMNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVM---SYYIKTNvIIMLMVIMSAIIG 161
Cdd:MTH00070   87 MNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSN-LLIIMGLLSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 162 SLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLIY 241
Cdd:MTH00070  166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 242 MSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTsIILTMEMNKWNVKT 310
Cdd:MTH00070  246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA-MSLTTSPNTSNSKL 313
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-298 2.19e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.44  E-value: 2.19e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   5 SSKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMKMTM 84
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  85 YWVMndmmtLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNV---IIMLMVIMSAIIG 161
Cdd:MTH00144   84 WFSM-----SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlayLLCVISVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 162 SLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNqNKLIWLNQMFNSNNNNNLNKYLIY 241
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2473932307 242 MSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSII 298
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-299 2.82e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 165.53  E-value: 2.82e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMKMTMYWV 87
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  88 ---MNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMS--YYIKTNVIIMLMVIMSAIIGS 162
Cdd:MTH00200   87 semLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 163 LGGLNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLIYM 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2473932307 243 SMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIIL 299
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLT 303
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-309 3.40e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 156.76  E-value: 3.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMKMTMywv 87
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL--- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  88 mNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMLMVIMSAIIGSLGGLN 167
Cdd:MTH00197   78 -SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 168 QSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLIYMSMLSL 247
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2473932307 248 GGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIILTMEMNKWNVK 309
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-299 2.69e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.24  E-value: 2.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   8 MLFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMKMTMywv 87
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL--- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  88 MNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNV--IIMLMVIMSAIIGSLGG 165
Cdd:MTH00011   86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlpMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 166 LNQSSLRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIWLNQMFNSNNNNNLNKYLIYMSML 245
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2473932307 246 SLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIIL 299
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 8.75e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.75e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  24 SYSWMGVWMGLEINMLAFMPLL-SKQHNKLMNETSIKYFIIQALASSMLMMSIILI--------------QMKMTMYWVM 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  89 NDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMN-CLMLMTWQKLAPMTVM-------SYYIKTNVIIMLMVIMSAII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 161 GSLGGLNQSSLRKIMAYSSINHMGWMISTMMI----SETLWELYFMIYSTLSILTIMMMN-----QNKLIWLNQMFNSNN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2473932307 232 NNNLNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSS 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-292 2.14e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.25  E-value: 2.14e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  13 FIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMN-ETSIKYFIIQALASSMLMMSIILI------------- 78
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyin 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  79 ---QMKMTMYWVMNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMLMVI 155
Cdd:MTH00196   81 lvlNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 156 MSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTM----MISETLWELYFMIYSTLSILTIMMM-----NQNKLIWLNQM 226
Cdd:MTH00196  161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIIlalnvYKNLIIEFSGL 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932307 227 FNSNNNNNLNKYLIYmsmLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:MTH00196  241 SRRLPILAITLALTF---LSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-292 8.98e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.87  E-value: 8.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   9 LFLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLS-KQHNKLMNETSIKYFIIQALASSMLMMSIILI--------- 78
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgslnl 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  79 -QMKMTMYWVMNDMMTLMISLSLML-----KIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVM---------SYY 143
Cdd:COG1007   186 aGIAAALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 144 IKTNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMI------STMMISETLweLYFMIYSTLSILTIMMmnq 217
Cdd:COG1007   266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlglaagTPLGVSAAL--FYLLAYLFMNLGAFAV--- 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 218 nkLIWLNQMFNSNNNNNLNKYLIY----------MSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLY 287
Cdd:COG1007   341 --ILLLSRKGGEAEEIEDLAGLARrspllalamtIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 2473932307 288 YYLRI 292
Cdd:COG1007   419 YYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-292 2.18e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.47  E-value: 2.18e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  13 FIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLS-KQHNKLMNETSIKYFIIQALASSMLMMSIILI----------QMK 81
Cdd:TIGR01770 110 FALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  82 MTMYWVMND-----MMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLA---PMTVMSYYIKTN------ 147
Cdd:TIGR01770 190 LFLSNGMLNislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawq 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 148 VIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGW-MISTMMISETLWE---LYFMIYSTLSI---LTIMMMNQNKL 220
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafGVLSLLRSYKD 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2473932307 221 IWLNQMFNSNNNNNLNKY---LIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:TIGR01770 350 EWIEYISDFAGLFKTNPIlaiLILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-292 7.49e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.99  E-value: 7.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   4 NSSKMLFLsFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMN-ETSIKYFIIQALASSMLMMSIILI---- 78
Cdd:MTH00199   97 QSSPILIL-IVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALLyglt 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  79 ---QMKMTMYWVMNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMLMVI 155
Cdd:MTH00199  176 getSIQGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAV 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 156 MSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTMMI----SETLWELYFMIYSTLSILTIMMMNQNKLIW--LNQMFNS 229
Cdd:MTH00199  256 LSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGL 335

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2473932307 230 NNNNNLNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:MTH00199  336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-292 2.35e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 82.56  E-value: 2.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  13 FIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLS-KQHNKLMNETSIKYFIIQALASSMLMMSIILI----------QMK 81
Cdd:PRK05777  111 FALLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgslsfaGIA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  82 MTMYWVMNDMMTLMISLSLML-----KIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVM---------SYYIKTN 147
Cdd:PRK05777  191 KALADGSGNSLLLLFGLVFLLvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQ 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 148 VIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMI------STMMISETLweLYFMIY--STLSILTIMMMNQNK 219
Cdd:PRK05777  271 QVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglaagTAEGYSAVL--FYLLAYlfMTLGAFGVISLLRRK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932307 220 LIWLNQMFNSNNNNNLNKYL-IYMS--MLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:PRK05777  349 GGEAESISDFAGLSKRSPLLaAVMTifMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 3.41e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 66.71  E-value: 3.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  10 FLSFIIMGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMNETSIKYFIIQALASSMLMMSIILIQMkMTMYWVMN 89
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYG-ATGTLNMA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  90 DMMT--------------LMISLSLMLKIGVAPIHYWLPEVMGE-------------TNWMNCLMLMTWQKLAPMTVMSY 142
Cdd:COG0651   191 DLAArlaeldpglllaafALLLVGFGIKAALFPLHFWLPDAYPAapspvsallsgllTKVGVYAILRVLTLLFGADPALF 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 143 yikTNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETL---WELYFMIYSTLSILT-------I 212
Cdd:COG0651   271 ---LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHALAKALlflaagaI 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 213 MMMNQNKLIWLNQMFNSNNNNNLNKYLIymSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:COG0651   348 ERATGTRDLDKLGGLGKRMPLTAAAFLI--GALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-295 1.05e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 62.57  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  16 MGSMISLSSYSWMGVWMGLEINMLAFMPLLSKQHNKLMN---------ETSIKYFIIQALASSML--------------- 71
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYlfgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  72 MMSIILIQMKMT--MYWVMNDMMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVI 149
Cdd:MTH00198  279 MLGTILSATLETtnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 150 IMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMIstMMISETLWE------LYFMIY--STLSILTIMMM------ 215
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYEslqaswTYAVTYlvSALASFTVICTleefgt 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 216 -------------NQNKLIWLNQMFNSNNNNNLNKYLIYMSMLSLGGLPPFLGFVPKWM----AIQMMIENKMT---FIV 275
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFilvgSIKIAFSSSLSiyyLVA 516

                         330       340
                  ....*....|....*....|
gi 2473932307 276 IILVMSSMITLYYYLRITLT 295
Cdd:MTH00198  517 LFAIICTCISAFYYIRIVAT 536
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 59-292 2.25e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.35  E-value: 2.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  59 KYFIIQALASSMLMMSIILIQMkMTMYWVMNDM------------MTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCL 126
Cdd:PRK08375  160 KYLIVGLIGSTFLLIGVGLLYG-VTGTLNMADLagalaenptvvtAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 127 ML----------MTWQKLAPMTVMSYYIKTNVIIMLMVIMSA--IIGSLGGLNQSSLRKIMAYSSINHMGWMI------S 188
Cdd:PRK08375  239 LLsglvtkvavyALIRIYFTVFGGDFRFALGLGWLLAVLALLsmLVGSLAALGQDDVKRVLAYSTVSQMGYILlglallT 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 189 TMMISETLWELY---------FM----IYSTLSILTIMMMNQ--NKLIWLNQMfnsnnnnnlnkylIYMSMLSLGGLPPF 253
Cdd:PRK08375  319 PLALAAGLLHLLhhalmkgalFLaagaIEVTYGTRRLSELSGlgRRMPLTAAA-------------FAVASLSLIGVPPT 385

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2473932307 254 LGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:PRK08375  386 SGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-293 1.46e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.08  E-value: 1.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307   3 NNSSKMLFLSFIIMGSMISLSSYSWMGVWMGLEINMLA--FMPLLSKQHNKlmnETSIKYFIIQALASSMLMMSIILIQM 80
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKESR---KASLKYFVLSAIGAYAMLYAIFLIYA 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  81 KMTMY-------WVMND-------MMTLMISLSLMLKIGVAPIHYWLPEVMGETN-------------------WMNCLM 127
Cdd:PRK08668  173 KTGTFdfadisqGLINDtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygfLLVLYV 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 128 LMTWQKLAPMTVMSYYIKTNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWM---ISTM-----------MIS 193
Cdd:PRK08668  253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIlvgLGLGtslgfagglfhVFN 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 194 ETLWE-LYFMIYSTLSILT--IMMMNQNKLIWLNQMFNSNnnnnlnkYLIymSMLSLGGLPPFLGFVPKWMAIQMMIENK 270
Cdd:PRK08668  333 HALFKgLFFLIFAAVIYRTgtTKISEMGGLIEKMPFTFAM-------YLV--AIISLAGIPPMSGFASKWLIFEALISKG 403

                         330       340
                  ....*....|....*....|...
gi 2473932307 271 MTFIVIILVMSSMITLYYYLRIT 293
Cdd:PRK08668  404 MPITAFMAFFGSIGSFLYVFRPL 426
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
146-296 6.09e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 47.64  E-value: 6.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 146 TNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETL-------WELYFMIYSTLSILTI-MMMNQ 217
Cdd:PRK12663  271 LHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAgingaifYLVHDMVVKTALFLIAgSLVRL 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 218 NKLIWLNQMFNSNNNNNLNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTS 296
Cdd:PRK12663  351 TGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 91-307 8.26e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 43.71  E-value: 8.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  91 MMTLMISLSLMLKIGVAPIHYWLPEVMGETNWMNCLMLMTWQKLAPMTVMSYYIKTNVIIMLMVIMsaIIGSLGGLNQSS 170
Cdd:MTH00091   58 SFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGL--LICFFQMFLLKS 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 171 LRKIMAYSSINHMGWMISTMMISETLWELYFMIYSTLSILTIMMMNQNKLIwlnqmfnsnnnnnlnKYLIYMSMLSLGGL 250
Cdd:MTH00091  136 YKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKL---------------NFVSWETLLVFMNL 200

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2473932307 251 PPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTSIILTMEMNKWN 307
Cdd:MTH00091  201 PFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYN 257
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-187 8.68e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 44.32  E-value: 8.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  34 LEINMLAFMPLLSKQHNKLMN-ETSIKYFIIQALASSM--------------LMMSIILIQMKMTMYWVMNDMMTLMISl 98
Cdd:PRK08376  150 LEIMSIASYALVAFRNDTWEAiEAGIKYMFVGSLASSMvllgiallygqygtLNMAYLAVKMSENPTVVAKIALALFIA- 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  99 SLMLKIGVAPIHYWLPEVMGET-NWMNCLMLMTWQ----KLAPMTVMSYYIKTNV-----IIMLMVIMSAIIGSLGGLNQ 168
Cdd:PRK08376  229 GLAMKSGAVPVHMWLPDAYPAApSSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQ 308

                         170
                  ....*....|....*....
gi 2473932307 169 SSLRKIMAYSSINHMGWMI 187
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYML 327
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-296 1.73e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.01  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 146 TNVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMI-------STMMISETLWELYFMIYST-LSILTIMMMNQ 217
Cdd:PRK07691  274 THYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILvgvammtESGMIGAIYYLIHDMIVKAaLFLLIGIMIKI 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932307 218 NKLIWLNQMFNSNNNNNLNKYLIYMSMLSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRITLTS 296
Cdd:PRK07691  354 TGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKG 432
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-292 1.98e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 43.04  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 148 VIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGWMISTMMISETLW---ELYFMIYSTLSiLTIMMMNQNKLIWLN 224
Cdd:PRK12667  296 PILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIA-KSLLFLASGVFIHAA 374

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2473932307 225 QMFNSNNNNNLNKYLIYMSM------LSLGGLPPFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:PRK12667  375 GTRDIDELAGLGRKMPIASFafligaLSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRA 448
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
149-292 1.92e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 40.03  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 149 IIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHMGW-MISTMMISETLWE---LYFMIYstlsiltiMMMNQNKLIWLN 224
Cdd:PRK02504  278 LFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIGLVAGTEAGYAsmvFYLLAY--------LFMNLGAFACVI 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 225 QMFNSNNNNNLNKYL------------IYMSMLSLGGLPPFLGFVPK----WMAIQmmieNKMTFIVIILVMSSMITLYY 288
Cdd:PRK02504  350 LFSLRTGTDQISDYAglyqkdplltlgLSLCLLSLGGIPPLAGFFGKiylfWAGWQ----AGLYLLVLVGLVTSVISIYY 425


                  ....
gi 2473932307 289 YLRI 292
Cdd:PRK02504  426 YIRV 429
ndhB CHL00049
NADH dehydrogenase subunit 2
 54-292 7.90e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 38.06  E-value: 7.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307  54 NETSIKYFIIQALASSMLMMSIIL--------IQMKMTMYWVMNDMMT--LMISLSLML-------KIGVAPIHYWLPEV 116
Cdd:CHL00049  161 NEATMKYLLMGGASSSILVYGFSWlyglsggeIELQEIVNGLINTQMYnsPGISIALIFitvgigfKLSLAPFHQWTPDV 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 117 -----------MGETNWMNCLMLMTwqklAPMTVMSYYIKT--NVIIMLMVIMSAIIGSLGGLNQSSLRKIMAYSSINHM 183
Cdd:CHL00049  241 yegsptpvvafLSVTSKVAASALAT----RIFDIPFYFSSNewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932307 184 GWMISTMMISETLWELYFMIYSTLsilTIMMMNQNKLIWLNQMFNSNNNNNLNKYL-IYM-----------SMLSLGGLP 251
Cdd:CHL00049  317 GYVIIGIIVGDSNDGYASMITYML---FYIFMNLGTFACIVLFGLRTGTDNIRDYAgLYTkdpflalslalCLLSLGGIP 393

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2473932307 252 PFLGFVPKWMAIQMMIENKMTFIVIILVMSSMITLYYYLRI 292
Cdd:CHL00049  394 PLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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