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Conserved domains on  [gi|2473932305|ref|YP_010735841|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Phytomastax pentaspinula]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 9.27e-153

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 440.74  E-value: 9.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  81 FSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 161 VYYLINTLCFPLLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMV 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 241 FNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 321 VYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2473932305 401 YSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMKGDYLLM 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 9.27e-153

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 440.74  E-value: 9.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  81 FSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 161 VYYLINTLCFPLLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMV 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 241 FNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 321 VYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2473932305 401 YSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMKGDYLLM 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 2.48e-58

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 198.77  E-value: 2.48e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  48 ISYFMGMDVFSYMLIMLSLWICLLMITSSSNI---YFSFYYnnlflFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTL 124
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNEikkRPKLYY-----ALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMY 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 125 FLILGWGYqPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV-----FSTNMYFFFYLFSILAFLVKMPMFM 199
Cdd:COG1008   149 FLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaapLPLTAQLLLFLAFFIAFAVKVPMFP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMVFN---HIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAY 276
Cdd:COG1008   228 FHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA--LPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 277 SSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMA 356
Cdd:COG1008   306 SSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLG 385

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2473932305 357 APPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMY 399
Cdd:COG1008   386 LPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 3.14e-53

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 3.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 106 SMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV------FSTNM 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 180 YFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLS-NIVYERSGSRMLMFNKGMMN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2473932305 339 FMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 7-399 1.04e-49

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 175.90  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   7 MLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNygfISYFMGMDVFSYMLIMLSLWICLLMITSSSNIYFSfyYN 86
Cdd:TIGR01972  31 LVVALATLLLSLLLLFQFDPTGSGFQFTEDIPWIPALG---ISYHLGVDGISLLLVLLTALLTLLAILASWESIQK--RV 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  87 NLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGyQPERLQAGIYLMFYTLFASLPLLLVLFSVYYL-- 164
Cdd:TIGR01972 106 KEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLgg 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 165 ----INTLCFPLLVFSTNMYFFFYLFsiLAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMV 240
Cdd:TIGR01972 185 gtfdLLELLNLPLPFGVQTWLFLAFF--IAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFN--LPL 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 241 FNHIYNYF---LISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCL 317
Cdd:TIGR01972 261 FPDASLYFapvLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLL 340

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 318 SNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLY 397
Cdd:TIGR01972 341 VGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLT 420


                  ..
gi 2473932305 398 MY 399
Cdd:TIGR01972 421 LY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 9.27e-153

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 440.74  E-value: 9.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  81 FSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFS 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 161 VYYLINTLCFPLLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMV 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 241 FNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 321 VYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2473932305 401 YSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMKGDYLLM 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 33-444 5.67e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 343.36  E-value: 5.67e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  33 FMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSF 112
Cdd:MTH00150    1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 113 YLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPL---LVFSTNMYFFFYLFSIL 189
Cdd:MTH00150   81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLissLRKLLSSMGLWGLLVFL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 190 AFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVD 269
Cdd:MTH00150  161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 270 LKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFL 349
Cdd:MTH00150  241 VKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 350 LSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHW 429
Cdd:MTH00150  321 FCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHW 400

                         410
                  ....*....|....*
gi 2473932305 430 LPLNILFMKGDYLLM 444
Cdd:MTH00150  401 VPLLLLILKSDLLFM 415
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-442 3.00e-111

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 335.17  E-value: 3.00e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWVVHS---LLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSS 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  78 NIYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 158 LFSVYYLINTLCFPLLVFSTNMYF---FFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRM 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSSMEPPSIYlmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 235 MKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 315 FCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 2473932305 395 TLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMKGDYL 442
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-438 1.06e-108

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 328.69  E-value: 1.06e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMP---LCLVNNIW--WVVHSLLL-LMSFMFMFYSYsiFNYGFISYFMGMDVFSYMLIMLSLWICLLMIT 74
Cdd:MTH00124    1 MLKIILPTIMLIPttlLSKPKFLWtnTTTYSLLIaLLSLQWLKPPY--YPTKNLTQWLGIDQISAPLLVLSCWLLPLMIL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  75 SSSNIYFSFYYNN--LFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASL 152
Cdd:MTH00124   79 ASQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 153 PLLLVLFSVYYLINTLCFPLLVFSTNM------YFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00124  159 PLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 227 GGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLG 306
Cdd:MTH00124  239 GGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIA 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 307 HGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMF 386
Cdd:MTH00124  319 HGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGL 398

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 387 LSFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMK 438
Cdd:MTH00124  399 ATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILK 450
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-438 3.11e-108

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 327.32  E-value: 3.11e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFN-YGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNI 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLmTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  80 YFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 160 SVYYLINTLCFPLLV---FSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFplnFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 237 FIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 317 LSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 2473932305 397 YMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMK 438
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILK 442
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-432 5.37e-108

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 326.93  E-value: 5.37e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWW---VVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSS 77
Cdd:MTH00044    3 TLILLSLGIAITSWIVPKNKLWpisISQSSLISLLSLFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  78 NI--YFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLL 155
Cdd:MTH00044   83 NHlsNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 156 LVLFSVYYLINTLCFPLLVFSTNMYFFF------YLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGY 229
Cdd:MTH00044  163 ISLIAIYSSSSSLSIPLSELNWLTSLSSnsssiwWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGY 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 230 GLIRMMK-FIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHG 308
Cdd:MTH00044  243 GLIRLINlFSLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHG 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 309 LCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLS 388
Cdd:MTH00044  323 LVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLAT 402

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2473932305 389 FFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPL 432
Cdd:MTH00044  403 VFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-438 1.46e-103

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 315.70  E-value: 1.46e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWV-----VHSLLL-LMSFMFMFYSYSIFNygFISYFMGMDVFSYMLIMLSLWICLLMIT 74
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLwtlttTNSLIIaFLSLMWFNLPSETMN--FTNKYFGIDQISSPLLILTCWLLPLMIL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  75 SSSN--IYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASL 152
Cdd:MTH00068   79 ASQNhlKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 153 PLLLVLFSVYYLINTLCFPLLVFSTNMYFF------FYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00068  159 PLLIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 227 GGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLG 306
Cdd:MTH00068  239 GGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMIS 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 307 HGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMF 386
Cdd:MTH00068  319 HGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGL 398

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 387 LSFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMK 438
Cdd:MTH00068  399 GTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILK 450
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-435 1.03e-97

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 300.66  E-value: 1.03e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWWV-----VHSLLLLMSFMFMFYSYSIFNYGFISYFMgMDVFSYMLIMLSLWICLLMITS 75
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  76 SSN--IYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLP 153
Cdd:MTH00110   80 SQHhlSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 154 LLLVLFSVYYLINTLCFPLLVFSTNMYF------FFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110  160 LLVALLYIQNNLGSLNFLLLQLWAQPLPnswsnnLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 228 GYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGH 307
Cdd:MTH00110  240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 308 GLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFL 387
Cdd:MTH00110  320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 2473932305 388 SFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNIL 435
Cdd:MTH00110  400 MLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLL 447
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 7.22e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 285.29  E-value: 7.22e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   5 MIMLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNYG--FISYFMGMDVFSYMLIMLSLWICLLMITSSSNIYF- 81
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGwsFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKn 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  82 -SFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFS 160
Cdd:MTH00206   86 ePINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 161 VYYLINTLCFPLLVFS---TNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKF 237
Cdd:MTH00206  166 LQNSLGSLSLYILYFSkltTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 238 IMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 318 SNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 2473932305 398 MYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMK 438
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-438 1.31e-88

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 277.22  E-value: 1.31e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWW-----VVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITS 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWlwtttLAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  76 SSNIYFSFYYNN--LFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 154 LLLVLFSVYYLINTLCFPLLVFSTNMYFFFYLFSI------LAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLwwagclLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 228 GYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 308 GLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2473932305 388 SFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYMREYHLLFLHWLPLNILFMK 438
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILK 451
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 2.48e-58

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 198.77  E-value: 2.48e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  48 ISYFMGMDVFSYMLIMLSLWICLLMITSSSNI---YFSFYYnnlflFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTL 124
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNEikkRPKLYY-----ALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMY 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 125 FLILGWGYqPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV-----FSTNMYFFFYLFSILAFLVKMPMFM 199
Cdd:COG1008   149 FLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaapLPLTAQLLLFLAFFIAFAVKVPMFP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMVFN---HIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAY 276
Cdd:COG1008   228 FHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA--LPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 277 SSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMA 356
Cdd:COG1008   306 SSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLG 385

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2473932305 357 APPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMY 399
Cdd:COG1008   386 LPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 3.14e-53

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 3.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 106 SMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV------FSTNM 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 180 YFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLS-NIVYERSGSRMLMFNKGMMN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2473932305 339 FMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 26-399 2.64e-52

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 183.09  E-value: 2.64e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  26 SLLLLMSF------MFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIyfSFYYNNLFLFLIMFLLLM 99
Cdd:PRK05846   46 SLVLWIGFdssnagFQFVEKHPWIPRFGISYHLGVDGISLLLVVLTALLTPLAVLASWEE--IKKRVKFYMAALLWLEGG 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 100 LFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYqPERLQAGIYLMFYTLFASLPLLLVLFSVYYL----INTLCFPLLV- 174
Cdd:PRK05846  124 VIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLn 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 175 --FSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIM-VFNHIYNYFLIS 251
Cdd:PRK05846  203 lpLPPGVQYWLFLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFpDASHEFAPIIIT 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 252 LSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLM 331
Cdd:PRK05846  283 LGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIA 362

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473932305 332 FNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMY 399
Cdd:PRK05846  363 DYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 104-399 1.16e-51

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 181.03  E-value: 1.16e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV---FSTNMY 180
Cdd:MTH00204  129 FSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLnikLPLSIQ 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 181 FFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIM-VFNHIYNYFLISLSLMGGMI 259
Cdd:MTH00204  209 KWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFpAASEYFAPLIVMLSVIAVIY 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNF 339
Cdd:MTH00204  289 GSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLT 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 340 MPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMY 399
Cdd:MTH00204  369 MPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 104-426 1.57e-50

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 177.94  E-value: 1.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV---FSTNMY 180
Cdd:MTH00217  126 FTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCclkIEKELQ 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 181 FFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRM-MKFIMVFNHIYNYFLISLSLMGGMI 259
Cdd:MTH00217  206 YFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIY 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNF 339
Cdd:MTH00217  286 GSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVIT 365

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 340 MPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYSYSQHGIYYSGLYSFSMSYM 419
Cdd:MTH00217  366 MPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFGAPSKYLYFSRDLNR 445


                  ....*..
gi 2473932305 420 REYHLLF 426
Cdd:MTH00217  446 REFYVLL 452
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 7-399 1.04e-49

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 175.90  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   7 MLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNygfISYFMGMDVFSYMLIMLSLWICLLMITSSSNIYFSfyYN 86
Cdd:TIGR01972  31 LVVALATLLLSLLLLFQFDPTGSGFQFTEDIPWIPALG---ISYHLGVDGISLLLVLLTALLTLLAILASWESIQK--RV 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  87 NLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGyQPERLQAGIYLMFYTLFASLPLLLVLFSVYYL-- 164
Cdd:TIGR01972 106 KEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLgg 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 165 ----INTLCFPLLVFSTNMYFFFYLFsiLAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMV 240
Cdd:TIGR01972 185 gtfdLLELLNLPLPFGVQTWLFLAFF--IAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFN--LPL 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 241 FNHIYNYF---LISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCL 317
Cdd:TIGR01972 261 FPDASLYFapvLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLL 340

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 318 SNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLY 397
Cdd:TIGR01972 341 VGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLT 420


                  ..
gi 2473932305 398 MY 399
Cdd:TIGR01972 421 LY 422
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 27-418 8.69e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 171.24  E-value: 8.69e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  27 LLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITsssniyfsfYYNNLFLFLIMFLLLMLFMAFSS 106
Cdd:MTH00094   11 LFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLS---------EKNFNLLILSNLLILICLLFFVS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 107 MNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINtlcfpLLVFSTNMYFFFYLF 186
Cdd:MTH00094   82 SNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFS-----LCYFDFFLSWEMFFI 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 187 SILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFimvFNHIYNYFLISLSLMGGMIVSVYCLR 266
Cdd:MTH00094  157 LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGS---LNFVYNNFWIIFSLLGMILSSFCCVF 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 267 QVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLW 346
Cdd:MTH00094  234 QSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLI 313

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 347 WFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYMYSYSQHGIYYSGLYSFSMSY 418
Cdd:MTH00094  314 FSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 104-397 9.41e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 165.48  E-value: 9.41e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPtLFLILG-WGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLL-----VFST 177
Cdd:MTH00226  148 FSVLDIFMFYILFEGVLIP-MYLILGiWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLascshVVSE 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 178 NMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFN-HIYNYFLISLSLMG 256
Cdd:MTH00226  227 QTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGaQNLAPAVIAMGIVG 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 257 GMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGM 336
Cdd:MTH00226  307 IVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGL 386

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2473932305 337 MNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLY 397
Cdd:MTH00226  387 SITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 103-403 3.56e-33

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 129.50  E-value: 3.56e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 103 AFSSMNLFSFYLFFESSLIPTLFLILGWGYqPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLL-----VFST 177
Cdd:COG0651   123 AFLTGDLFNLFVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDP 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 178 NMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMK--FIMVFNHIYNYFLISLSLM 255
Cdd:COG0651   202 GLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTllFGADPALFLGTLLLVLGLL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 256 GGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKG 335
Cdd:COG0651   282 TMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGG 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2473932305 336 MMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIV-SWSWLMMMILMFLSFFSAMYTLYMYSYSQ 403
Cdd:COG0651   362 LGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALeAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 104-375 8.45e-30

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 121.29  E-value: 8.45e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILGWGYQpERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLVFSTNMY--- 180
Cdd:PRK12561  104 FLAQDLLLFFLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYpla 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 181 --FFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYnyfLISLSLMGGM 258
Cdd:PRK12561  183 leLLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVY---FAPALAILGV 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 259 IVSVY----CLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNK 334
Cdd:PRK12561  260 VNIIYgalnAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMG 339

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2473932305 335 GMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVS 375
Cdd:PRK12561  340 GLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITS 380
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 104-370 5.80e-27

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 113.26  E-value: 5.80e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILGWGYQpERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV-----FSTN 178
Cdd:PRK02546  132 FAVQDMLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTAlaakdFGLG 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 179 MYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIY-NYFLISLSLMGG 257
Cdd:PRK02546  211 FQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQfAPLLIVLGVVNI 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 258 MIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMM 337
Cdd:PRK02546  291 IYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVG 370

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2473932305 338 NFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLF 370
Cdd:PRK02546  371 QKMRKMFAMWTACSLASLALPGMSGFVAELMVF 403
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 6.69e-26

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 109.79  E-value: 6.69e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  48 ISYFMGMDVFSYMLIML-SLWICLLMITSSSNIYFS-FYYNnlflfLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLF 125
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLnSLLTLIAIYSSDESIQRPrFYYS-----LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 126 LILGWGYQpERLQAGIYLMFYTLFASLPLLLVLFSVYYL-------INTLCFPLLVFSTNMYFFFYLfsILAFLVKMPMF 198
Cdd:PRK06473  146 LIAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLsgassfdYEPLRSHTLPLSTQLLLLAPI--LVGFGIKIPLV 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 199 MVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMVFNHIYNYF---LISLSLMGGMIVSVYCLRQVDLKSLIA 275
Cdd:PRK06473  223 PFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFG--VGLFPEAWVYLapwLATWAVVSVLYGASCAIAQKDMKKMVA 300

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2473932305 276 YSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMN 338
Cdd:PRK06473  301 YSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
ndhD CHL00011
NADH dehydrogenase subunit 4
 104-417 5.57e-25

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 106.95  E-value: 5.57e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILGWGYQpERLQAGIYLMFYTLFASLPLLL-VLFSVYYLIN--TLCFPLLV---FST 177
Cdd:CHL00011  129 FSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIgVLGMGLYGSNepTLNFETLAnqsYPV 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 178 NMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRM-MKFIMVFNHIYNYFLISLSLMG 256
Cdd:CHL00011  208 ALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQ 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 257 GMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGM 336
Cdd:CHL00011  288 IIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGI 367

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 337 MNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMytlymysysqhGIYYSGLYSFSM 416
Cdd:CHL00011  368 AIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAI-----------GMILTPIYLLSM 436


                  .
gi 2473932305 417 S 417
Cdd:CHL00011  437 L 437
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-401 1.17e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 103.04  E-value: 1.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 103 AFSSMNLFSFYLFFESSLIPTLFLIlGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLL--------V 174
Cdd:PRK08375  122 ALLTADLFNLFVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpT 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 175 FSTNMYFFFylfsiLAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMM----KFIMVFNHIYNYFLI 250
Cdd:PRK08375  201 VVTAFGFVL-----LALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLA 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 251 SLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRML 330
Cdd:PRK08375  276 VLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRL 355

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 331 MFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVS-WSWLMMMILMFLSFFSAMYTLYMYSY 401
Cdd:PRK08375  356 SELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEaGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-357 1.60e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 96.70  E-value: 1.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  48 ISYFMGMDVFSYMLIMLSlwiCLLMITSSSNIYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 128 LGWGYQpERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFP-----LLVFSTNMYFFFYLFSILAFLVKMPMFMVHL 202
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDydaisTQNLSLNTQLILLTGLLLGFGIKIPLVPLHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 203 WLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkfIMVFNHIYNYFLISLSLMGGMIV---SVYCLRQVDLKSLIAYSSV 279
Cdd:PRK07363  227 WLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG--LQLFPQTWSLVAPGLAIIGTISViygALSAIAQKDIKRMVAYSSI 304

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473932305 280 VHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAA 357
Cdd:PRK07363  305 GHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMAS 382
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 7-389 1.97e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 86.90  E-value: 1.97e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   7 MLIMLMPLCLVNNIWWVVHSLLLLMSFMFMFYSYSIFNYGFIsyfmgMDVFSYMLIMLSLWICLlmitsSSNIYFSFYYN 86
Cdd:MTH00062    1 FYFFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNNVFNGLFI-----FDSLSFYLILLVLFLGL-----YSQVMFYNLLS 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  87 NLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLIN 166
Cdd:MTH00062   71 GVSRFFLFLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNG 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 167 TLCFPLLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVfNHIYN 246
Cdd:MTH00062  151 SFNFSDWGSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFS-GSFLG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 247 YFLISLSLMGGMIVSVYclRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSG 326
Cdd:MTH00062  230 YLFLCCLFSVFFLITAC--SELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSG 307

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2473932305 327 SRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSF 389
Cdd:MTH00062  308 SRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFF 370
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 20-372 5.72e-18

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 86.32  E-value: 5.72e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  20 IWWVVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSSSNIYFSFYYN---------NLFL 90
Cdd:PRK08667   35 LWLVIAIALLLFAGSLQLFTGNPLDIPLWGIAPGLDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNehmssneraNLLS 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  91 FLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCF 170
Cdd:PRK08667  115 ALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 171 PLLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLI 250
Cdd:PRK08667  195 SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIL 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 251 SLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILML-----------GHGLCSSGLFCLSN 319
Cdd:PRK08667  275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALlalggalfhslNHALFKSLLFLTAG 354

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2473932305 320 IVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNS 372
Cdd:PRK08667  355 SVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 109-417 1.86e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 84.64  E-value: 1.86e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 109 LFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLVFSTNMYFF------ 182
Cdd:PRK12667  135 AFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSAKIRGLSFpltggl 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 183 ----------FYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFI-------MVFNHIY 245
Cdd:PRK12667  215 agnpplalgvALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIfgispslIDFRAAL 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 246 NYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERS 325
Cdd:PRK12667  295 SPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAA 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 326 GSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLS-------FFSAMYTLYM 398
Cdd:PRK12667  375 GTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIAsaislvgYFRAWYSLFF 454

                         330
                  ....*....|....*....
gi 2473932305 399 YSySQHGIYYSGLYSFSMS 417
Cdd:PRK12667  455 GK-PKSGEEVEHKESPSMS 472
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-398 4.77e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 79.97  E-value: 4.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 186 FSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIR--MMKFIMVFNHIYNYFLISLSLMGGMIVSVY 263
Cdd:PRK06458  219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyILIDAAIGSDFPGRLLLIFGLLSVLVAAFF 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 264 CLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMM 343
Cdd:PRK06458  299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932305 344 ClWWFLLSSSNMA-APPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLYM 398
Cdd:PRK06458  379 G-WGLMLGALAIAgMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVR 433
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 104-390 3.66e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 74.65  E-value: 3.66e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 104 FSSMNLFSFYLFFESSLIPTLFLILgWGYQPERLQAGIYLMFYTLFASLpLLLVLFSVYYLINTLCFP------LLVFST 177
Cdd:PRK08668  115 FLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFAdisqglINDTST 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 178 NMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIM---VFNHI--------YN 246
Cdd:PRK08668  193 GFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPgtkLFSEFgtyrgvplFN 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 247 YFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSG 326
Cdd:PRK08668  273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTG 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2473932305 327 SRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSwlmMMILMFLSFF 390
Cdd:PRK08668  353 TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKG---MPITAFMAFF 413
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-324 2.65e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 68.44  E-value: 2.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 103 AFSSMNLFSFYLFFESSLIPTlFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLvfSTNMYFF 182
Cdd:PRK07234  110 AFVCADLISLYVALEVLSIAT-FLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGL--ATADPEA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 183 FYLFsILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGgmivSV 262
Cdd:PRK07234  187 FALI-ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VL 261

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 263 YCLRQVDLKSLIAYSSVVHMSMVISGVLimnWWGVLGslilmLGHGLCSSGLFCLSNIVYER 324
Cdd:PRK07234  262 FALLEKDLKRMLAFSTISQLGFILAAPL---VGGLYA-----LAHGLVKSTLFLCAGALPSR 315
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 174-387 3.92e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 67.86  E-value: 3.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 174 VFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKfIMVFNHIYNYFLISLS 253
Cdd:PRK08676  199 LLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSA-LLRQSGAAEQFSNVLI 277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 254 LMGGMIVSVYC---LRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRML 330
Cdd:PRK08676  278 GLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRF 357

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2473932305 331 MFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWS-WLMMMILMFL 387
Cdd:PRK08676  358 DRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISvWLVLAVLLLL 415
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-87 1.08e-09

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 55.61  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305   1 MLKLMIMLIMLMPLCLVNNIWW-----VVHSLLLLMSFMFMFYSYSIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITS 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWlwttsTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90
                  ....*....|..
gi 2473932305  76 SSNIYFSFYYNN 87
Cdd:pfam01059  81 SQKHLKSEPNNR 92
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
103-396 2.37e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 59.19  E-value: 2.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 103 AFSSMNLFSFYLFFESSLIPTlFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLL------VFS 176
Cdd:PRK12663  124 SFLTGDLFNLYVWFEVMLIAS-FVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGD 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 177 TNMYFFFYLFSILAFLVKMPMFMVHlWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMG 256
Cdd:PRK12663  203 TATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAI 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 257 GMIVSVY-CLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKG 335
Cdd:PRK12663  282 TMVIGALgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGG 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2473932305 336 MMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTL 396
Cdd:PRK12663  362 LYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 2.82e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 58.98  E-value: 2.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 185 LFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFI-----MVFNHIYNYFLISLSLMGGMI 259
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNF 339
Cdd:PRK12662  293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2473932305 340 MPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIV-SWSWLMMMILMFLSFFSAMYT 395
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12650 PRK12650
DUF4040 family protein;
185-359 8.66e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 57.75  E-value: 8.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 185 LFSILAFLVKMPMFM------VHLWLPKAHVEA-PISGSMILAGVLlKLGGYGLIRmmkFIMVF--NHIYNYFLISLSLM 255
Cdd:PRK12650  206 LTTVVAVLIAVAAFTksaqfpFHFWLPEAMAAItPVSAFLHAAAVV-KAGIYLLLR---FSPVFhdVAVWNWLLIIVGMI 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 256 GGMIVSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKG 335
Cdd:PRK12650  282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361

                         170       180
                  ....*....|....*....|....
gi 2473932305 336 MMNFMPMMcLWWFLLSSSNMAAPP 359
Cdd:PRK12650  362 LWRRMPFT-FVSVTIAALSMAAVP 384
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-397 1.10e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 57.29  E-value: 1.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 103 AFSSMNLFSFYLFFESSLIPTlFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLVF------- 175
Cdd:PRK12665  127 AFLAGDLFNLYVGFEILLVAS-YVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVrldelps 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 176 STNMYFFFYLfsILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLM 255
Cdd:PRK12665  206 GTRTALFAVL--LVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPGGGLDTLLMVVALLT 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 256 ggMIVSVY-CLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNK 334
Cdd:PRK12665  284 --MVVGILgAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLG 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2473932305 335 GMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLFNSIVSWSWLMMMILMFLSFFSAMYTLY 397
Cdd:PRK12665  362 GLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAGGVVTSLLTLY 424
PRK12646 PRK12646
DUF4040 family protein;
106-398 2.99e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 55.92  E-value: 2.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 106 SMNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLVFSTN------M 179
Cdd:PRK12646  129 SDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADhiknhgL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 180 YFFFYLFSILAFLVKMPMFMVHLWLPKAhVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMI 259
Cdd:PRK12646  209 FIPMIFMFLLGAFTKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLF 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 260 VSVYCLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWG--------------VLGSLILMLGHGLCSSGLFCLSNIVYERS 325
Cdd:PRK12646  288 GSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAqhqqdaiasiyvfvLFAALFHLMNHAIFKCALFMGVGIIDHEA 367

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 326 GSRMLMFNKGMMNFMPMMCLwWFLLSSSNMAAPPSIN-LLGEIMLFNSIVS------WSWLMMMILMFL----SFFSAMY 394
Cdd:PRK12646  368 GTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNgFLSKEMFLDALTQtgqlsqFSLISMIIIVFIgviaSIFTFTY 446


                  ....
gi 2473932305 395 TLYM 398
Cdd:PRK12646  447 ALYM 450
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 66-396 5.76e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 54.82  E-value: 5.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  66 LWICLLMITSSSNIYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLIlGWGYQPERLQAGI-YLM 144
Cdd:PRK06589   95 LWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSGGYkYLK 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 145 FYTLFASLPLLLVLFSVYYLINTLCF-PLLVFSTNMYFFFYLFSILAfLVKMPMFMVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK06589  174 ILMISALLLFLPAVILIYTKTGNLDFvSGGLFSKNQSIILLLMFIYG-IAKTAIFPVHSWLPAAMVAHYPVSALLHAVIV 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 224 LKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVY-----CLRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVL 298
Cdd:PRK06589  253 VKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPIVSIFysslkALKTDNIKKILAYSTISQLSLALLSAFILTPKALG 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 299 GSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLWWFLLSSSNMAAPPSINLLGEIMLF-----NSI 373
Cdd:PRK06589  333 AAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILlaaseQNQ 412

                         330       340
                  ....*....|....*....|...
gi 2473932305 374 VSWSWLMMMILMFLSFFSAMYTL 396
Cdd:PRK06589  413 PWLSIIVMLVVIASSILSALYLL 435
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 108-362 2.29e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 52.97  E-value: 2.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 108 NLFSFYLFFESSLIPTLFLILGWGYQPERLQAGiylMFYTLFASLPLLLVLfsvyylintLCFPLLVFSTNMYFF----- 182
Cdd:PRK06521  134 DAFSFLVAWETMSLSSWFLVIANHREAEIRRAG---FLYLLMAHAGALAIL---------LAFGLLARESGSYDFaamra 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 183 ----------FYLFSILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRM-MKFIMVFNHIYNYFLIS 251
Cdd:PRK06521  202 ahlspfwaslVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVvFDLLGAPGWWWGVLVLA 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 252 LSLMGGMIVSVYCLRQVDLKSLIAYSSV-----VHMSMVISGVLIMNWWGVLGSLILM------LGHGLCSSGLFCLSNI 320
Cdd:PRK06521  282 LGAISAVLGVLYALAEHDLKRLLAYSTIenigiIFVGLGLAMVFIAYGMPLLAALALTaalyhlLNHALFKSLLFLGAGA 361

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2473932305 321 VYERSGSRMLMFNKGMMNFMPMMClWWFLLSSSNMAAPPSIN 362
Cdd:PRK06521  362 VLHATGTRDMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 188-359 3.82e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 52.08  E-value: 3.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 188 ILAFLVKMPMFMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMkFIMVFNHIYNYFLISLSLMGGMIVSV---YC 264
Cdd:PRK08377  213 IFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARIL-YLMQNANGWSSVLKLVIIMATLTVFFaelSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 265 LRQVDLKSLIAYSSVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMC 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                         170
                  ....*....|....*
gi 2473932305 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377  372 LALTIGALSTVGIPL 386
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-398 2.82e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 49.33  E-value: 2.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  20 IWWVVHSLLLLMSFMFMFYSY--SIFNYGFISYFMGMDVFSYMLIMLSLWICLLMITSssniyfsfyynnlflflimfll 97
Cdd:PRK08376   84 IIWEVDLFGAFMALIATIVSFlaVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITG---------------------- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  98 lmlfmafssmNLFSFYLFFESSLIPTLFLILGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLL---- 173
Cdd:PRK08376  142 ----------DLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLavkm 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 174 ---VFSTNMYFFFYLFSILAFlvKMPMFMVHLWLPKAHVEAPISGSMILagVLLKLGG-YGLIRMM--KFIMVFNHIYNY 247
Cdd:PRK08376  212 senPTVVAKIALALFIAGLAM--KSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVLfsIYGPAINLATVG 287

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 248 FLISLSLMGGMIVSV-YCLRQVDLKSLIAYSSV---------VHMSMVISGVLIMNWWGVL---GSLILMLGHGLCSSGL 314
Cdd:PRK08376  288 WVIIILGCLTMFVGVaMAVVQKDVKRLLAYHSVsqigymllgLGVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALL 367

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 315 FCLSNIVYERSGSRMLMFNKGMMNFMPMMCLwWFLLSSSNMAAPPSIN------LLGE-IMLFNSIVSWSWLMMMILMFL 387
Cdd:PRK08376  368 FLTAGAVIYETGTRNLNELGGLARTMPKTTI-AFLIGAAAIVGLPPFNgfaskwLIYEsSALFNPILGVIAMIGSVLTLA 446

                         410
                  ....*....|.
gi 2473932305 388 SFFSAMYTLYM 398
Cdd:PRK08376  447 SFVKVFHTAFF 457
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-359 5.98e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.32  E-value: 5.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305  55 DVFSYMLIMLSLWICLLMITSSSNIYFSFYYNNLFLFLIMFLLLMLFMAFSSMNLFSFYLFFESSLIPTLFLILGWGYQP 134
Cdd:PRK07691   76 DMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGGTKI 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 135 ErLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFP--------LLVFSTNMYFFFYLFSILAFLVKMPMFMVHLWLPK 206
Cdd:PRK07691  156 Q-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMAdisvkiaeLSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPG 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 207 AHVEAPISGSMILAGVLLKLGGYGLIRMmkFIMVFNH---IYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSVVHMS 283
Cdd:PRK07691  235 SYYAPPIAIAALFGALLTKVGVYAIART--FTLFFSHdtsFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVG 312

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2473932305 284 MVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMClWWFLLSSSNMAAPP 359
Cdd:PRK07691  313 VILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGIP 387
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 189-373 6.14e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.08  E-value: 6.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 189 LAFLVKMPM--FMVHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNhiYNYFLISLSLMGG---MIVSVY 263
Cdd:PRK06459  166 FGFIIKMGMmpFLVSEWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIP--IGYFGLTILAIGAfsiLFGALY 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 264 CLRQVDLKSLIAYSSV----VHMSMVISGVLIMNWWGVLGSLILM------LGHGLCSSGLFCLSNIVYERSGSRMLMFN 333
Cdd:PRK06459  244 AYVSENVKGLLAFSTIenngAILVALGLYMVTKQLITSIEHFSLItvilysFAHSVAKTGLFLSSGLQEKQSITYSKKIR 323

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2473932305 334 KGMMNfmpmmcLWWFLLSSSNMAAPPSINLLGEIMLFNSI 373
Cdd:PRK06459  324 NRWIE------LGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 106-387 6.25e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.88  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 106 SMNLFSFYLFFESSLIPTLFLIlGWGYQPERLQAGIYLMFYTLFASLPLLLVLFSVYYLINTLCFPLLV-FSTNMYFFFY 184
Cdd:PRK06525  132 SSTLLGLLLFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSgLHGSLKYLVF 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 185 LFSILAFLVKMPMFMVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVY 263
Cdd:PRK06525  211 LGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLM 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 264 CLRQVDLKSLIAYSSVVHMSMVISGVLIM---NWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFM 340
Cdd:PRK06525  290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKL 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2473932305 341 PMMCLWWFLLSSSNMAAPPSINLLGEIMLFN-----SIVSWSWLMMMILMFL 387
Cdd:PRK06525  370 PLVGVGFCVAALAITGVPPFNGFFSKFPIFAagfelSVEYWILLPAMVLLLI 421
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-372 8.43e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 8.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRMMKFIMVFNHIYNYFLISLSLMGGMIVSVYCLRQVDLKSLIAYSSV 279
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTL 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 280 VHMSMVISG-------------VLIMnwWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMCLw 346
Cdd:PRK08042  279 ENIGIILLGlgagvtgialeqpALIA--LGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI- 355

                         170       180
                  ....*....|....*....|....*..
gi 2473932305 347 WFLLSSSNMAAPPSIN-LLGEIMLFNS 372
Cdd:PRK08042  356 AMLVGLMAMAALPPLNgFAGEWVIYQS 382
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 201-359 2.48e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.29  E-value: 2.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 201 HLWLPKAhVEAPISGSMIL-AGVLLKLGGYGLIRMMKfimVFNHIYNYFLISLSL-MGGMIVSVY-CLRQVDLKSLIAYS 277
Cdd:PRK12644  223 HFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAP---GFADVPVWRPTVLVLgLATMLLGGWrALRQHDLKLILAYG 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473932305 278 SVVHMSMVISGVLIMNWWGVLGSLILMLGHGLCSSGLFCLSNIVYERSGSRMLMFNKGMMNFMPMMClWWFLLSSSNMAA 357
Cdd:PRK12644  299 TVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLA-VVAALAAASMAG 377


                  ..
gi 2473932305 358 PP 359
Cdd:PRK12644  378 LP 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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