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Conserved domains on  [gi|52220947|ref|YP_086807|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Bemisia tabaci]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 20-431 1.21e-97

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 299.38  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   20 IINYSLVMLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLIFS------KINQPKIYNKSVFMMLILLMMTFY 93
Cdd:MTH00163  26 SLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSsesvykKNNYSNLFLFLILFLLIFLLLTFS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   94 SWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNLSLWNIQYM----EMNKWEYL 169
Cdd:MTH00163 106 SMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLnffgSLNFLWYL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  170 SLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICF 249
Cdd:MTH00163 186 SMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  250 MQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMM 329
Cdd:MTH00163 266 RQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSL 345

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  330 MWFFMCMSNSPMPPSINFMGELFSLKSIMNWsgtSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNM 409
Cdd:MTH00163 346 WWFLLSSSNMAAPPSLNLLGEISLINSLISW---SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREY 422

                        410       420
                 ....*....|....*....|..
gi 52220947  410 NTTSMLIIPMIMISINPDLLII 431
Cdd:MTH00163 423 LLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 20-431 1.21e-97

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 299.38  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   20 IINYSLVMLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLIFS------KINQPKIYNKSVFMMLILLMMTFY 93
Cdd:MTH00163  26 SLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSsesvykKNNYSNLFLFLILFLLIFLLLTFS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   94 SWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNLSLWNIQYM----EMNKWEYL 169
Cdd:MTH00163 106 SMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLnffgSLNFLWYL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  170 SLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICF 249
Cdd:MTH00163 186 SMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  250 MQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMM 329
Cdd:MTH00163 266 RQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSL 345

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  330 MWFFMCMSNSPMPPSINFMGELFSLKSIMNWsgtSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNM 409
Cdd:MTH00163 346 WWFLLSSSNMAAPPSLNLLGEISLINSLISW---SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREY 422

                        410       420
                 ....*....|....*....|..
gi 52220947  410 NTTSMLIIPMIMISINPDLLII 431
Cdd:MTH00163 423 LLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 42-430 7.21e-41

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 151.39  E-value: 7.21e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  42 ISYFMWGDELSFWTFNLSLWIGFVLIFSKINQPKIYNKSvFMMLILLMMT-----FYSWNLMMFYLMFEMSMIVVLMIIM 116
Cdd:COG1008  74 ISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKRPKL-YYALLLLLEAgmigvFLALDLFLFYVFWELMLIPMYFLIG 152

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 117 TWGYqPERVEAALFMVMMTVMTSLPFITTMM-------NNSTNLSLW-NIQY-MEMNKWEYLSLMLVFMMKMPtMF-LHM 186
Cdd:COG1008 153 IWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalyflagALTFDIAELaAAPLpLTAQLLLFLAFFIAFAVKVP-MFpFHT 230

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 187 WLPKVHVESPVQGSMILASILLKLGSYGLIR----MTSTNSEMnnkLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSS 262
Cdd:COG1008 231 WLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRfalpLFPEASAY---FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 263 VVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMP 342
Cdd:COG1008 308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 343 PSINFMGELFSLKSIMNWSGTssTVVVTMTTIMFsSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMI 422
Cdd:COG1008 388 GTSGFVGEFLVLLGAFQVNPW--LAILAALGLIL-TAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464


                ....*...
gi 52220947 423 SINPDLLI 430
Cdd:COG1008 465 GLYPQPLL 472
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 59-422 6.38e-38

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 143.54  E-value: 6.38e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947    59 SLWIGFVLIFSKINQPKIYNKSVFMMLILLMMT---FYSWNLMMFYLMFEMSMIVVLMIIMTWGyQPERVEAALFMVMMT 135
Cdd:TIGR01972  87 ALLTLLAILASWESIQKRVKEFYALLLLLEAGVigvFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYT 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   136 VMTSLPFITTMM------NNSTNLSLWNIQYMEMN--KWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASIL 207
Cdd:TIGR01972 166 LAGSLLMLLAILglyflgGGTFDLLELLNLPLPFGvqTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVL 245

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   208 LKLGSYGLIRMTST-NSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMY 286
Cdd:TIGR01972 246 LKMGTYGFLRFNLPlFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVF 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   287 IMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNP--SAMMMWFFmcMSNSPMPPSINFMGELFSLksimnwSGTS 364
Cdd:TIGR01972 326 QMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPvlAAFFMLFA--MASLGLPGTSGFVGEFLIL------LGSF 397

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52220947   365 STVVVTMTTIMFSSSLYSIFMFYIITHGML-KKSTNTVKIFNSKNMNTTSMLIIPMIMI 422
Cdd:TIGR01972 398 KVNPVVAFLAALGIVLAAAYMLTLYKRVFFgELSNPEVAEFPDLNGREIAVLAPLVVLI 456
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 94-361 1.87e-37

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 137.83  E-value: 1.87e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947    94 SWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMM-----NNSTNLS-LWNIQYMEMNKWE 167
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISlmynyTGTLSFDeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   168 ----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALY 243
Cdd:pfam00361  81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   244 LSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMA-NIMYKNSKSRSIIINKSMFS 322
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 52220947   323 MNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWS 361
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 20-431 1.21e-97

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 299.38  E-value: 1.21e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   20 IINYSLVMLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLIFS------KINQPKIYNKSVFMMLILLMMTFY 93
Cdd:MTH00163  26 SLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSsesvykKNNYSNLFLFLILFLLIFLLLTFS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   94 SWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNLSLWNIQYM----EMNKWEYL 169
Cdd:MTH00163 106 SMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLnffgSLNFLWYL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  170 SLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICF 249
Cdd:MTH00163 186 SMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  250 MQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMM 329
Cdd:MTH00163 266 RQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSL 345

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  330 MWFFMCMSNSPMPPSINFMGELFSLKSIMNWsgtSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNM 409
Cdd:MTH00163 346 WWFLLSSSNMAAPPSLNLLGEISLINSLISW---SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREY 422

                        410       420
                 ....*....|....*....|..
gi 52220947  410 NTTSMLIIPMIMISINPDLLII 431
Cdd:MTH00163 423 LLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 27-429 5.66e-81

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 255.53  E-value: 5.66e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   27 MLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLIFS------KINQPKIYNKSVFMMLILLMMTFYSWNLMMF 100
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLAsqksvkLRNKSSSFSLLVLLLCLILVLAFSVSSLLMF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  101 YLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTM-----MNNSTNLSLWNIQYMEMNKWEYLSL--ML 173
Cdd:MTH00150  81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmssSYGSSFMLLISSLRKLLSSMGLWGLlvFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  174 VFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICFMQTD 253
Cdd:MTH00150 161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  254 LKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFF 333
Cdd:MTH00150 241 VKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFL 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  334 MCMSNSPMPPSINFMGELFSLKSIMnwsGTSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTS 413
Cdd:MTH00150 321 FCIINMAAPPSLNLLSEIMIFPSLI---SYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLL 397

                        410
                 ....*....|....*.
gi 52220947  414 MLIIPMIMISINPDLL 429
Cdd:MTH00150 398 LHWVPLLLLILKSDLL 413
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 51-431 2.10e-73

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 237.18  E-value: 2.10e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   51 LSFWTFNLSLW--IGFVLIFSKINQpKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAA 128
Cdd:MTH00044  69 LSCWLAPLSLLasINHLSNNSPNNQ-RTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAG 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  129 LFMVMMTVMTSLPFITTMM-----NNSTNLSLWNIQYMEMNKWEYLSL-----MLVFMMKMPTMFLHMWLPKVHVESPVQ 198
Cdd:MTH00044 148 LYFLFYTLFGSLPLLISLIaiyssSSSLSIPLSELNWLTSLSSNSSSIwwifcILAFLVKMPIYGFHLWLPKAHVEAPVA 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  199 GSMILASILLKLGSYGLIRMTSTNSEMN-NKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDK 277
Cdd:MTH00044 228 GSMILAAILLKLGGYGLIRLINLFSLPSaNNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGT 307

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  278 SKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSI 357
Cdd:MTH00044 308 NWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSI 387

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 52220947  358 MNWSgTSSTVVVTMTTIMfsSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLII 431
Cdd:MTH00044 388 ISWS-ILSFPIIGLATVF--GAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIILI 458
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 83-430 9.87e-73

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 235.48  E-value: 9.87e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   83 MMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLP------FITTMMNNSTNLSLW 156
Cdd:MTH00124 101 LLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPlliailYLHNQTGTLSLPMLQ 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  157 NIQYMEMNKWE----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWI 232
Cdd:MTH00124 181 LTHPTLTNSWTnlllWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYP 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  233 ILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSR 312
Cdd:MTH00124 261 FLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSR 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  313 SIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTssTVVVTMTTIMFSSSlYSIFMFYIITHG 392
Cdd:MTH00124 341 TLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPT--TIILTGLATLITAS-YTLYMFLSTQRG 417

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 52220947  393 MLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLI 430
Cdd:MTH00124 418 TLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELIS 455
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 19-429 4.12e-69

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 225.97  E-value: 4.12e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   19 LIINYSLVMLMFNLNMQkqeVSKISYFMWGDELSFWTFNLSLWIGFVLIFS--------KINQPKIYNKSVFMMLILLMM 90
Cdd:MTH00206  31 LIALLFLLWFKWSSEVG---WSFSNLYLSYDPLSSPLVILSCWLLPLMFLAsqnhmknePINRQRIYITLLIVLQLFLIL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   91 TFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPF---ITTMMNNSTNLSLWNIQY----MEM 163
Cdd:MTH00206 108 FFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLliaLLFLQNSLGSLSLYILYFskltTWN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  164 NKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALY 243
Cdd:MTH00206 188 NNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIM 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  244 LSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSM 323
Cdd:MTH00206 268 TSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMI 347

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  324 NPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMTTImfsSSLYSIFMFYIITHGMLKKSTNTVKI 403
Cdd:MTH00206 348 LPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLF---TAIYSLYMFVMTQHGKTPNHLLSLSP 424

                        410       420
                 ....*....|....*....|....*.
gi 52220947  404 FNSKNMNTTSMLIIPMIMISINPDLL 429
Cdd:MTH00206 425 SSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 28-430 1.90e-67

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 221.54  E-value: 1.90e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   28 LMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLIFSKIN------QPKIYNKSVFMMLILLMMTFYSWNLMMFY 101
Cdd:MTH00014  37 TLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASFKifqnnkAPKTFMTNILILNLILLLTFSASNLLMFY 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  102 LMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMM-----NNSTNL---SLWNIQYMEMNKWEYLSlML 173
Cdd:MTH00014 117 IFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILlifytNNSLSMlmsSMEPPSIYLMNLWWLIT-IL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  174 VFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICFMQTD 253
Cdd:MTH00014 196 AFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPD 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  254 LKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFF 333
Cdd:MTH00014 276 LKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFL 355

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  334 MCMSNSPMPPSINFMGELFSLKSIMNwsgTSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTS 413
Cdd:MTH00014 356 LSAANMAAPPSINLLSEIMLLTSILS---SSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMT 432

                        410
                 ....*....|....*..
gi 52220947  414 MLIIPMIMISINPDLLI 430
Cdd:MTH00014 433 LHLVPLFILILKPDLIT 449
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 71-429 1.26e-66

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 219.40  E-value: 1.26e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   71 INQPKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMM--- 147
Cdd:MTH00068  89 INRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLilq 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  148 NNSTNLSLWNIQYME-------MNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTS 220
Cdd:MTH00068 169 NSLGSLSLILLELMSpmqlmtyTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISI 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  221 TNSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFY 300
Cdd:MTH00068 249 LLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFC 328

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  301 MANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSgtSSTVVVTMTTIMFSSSl 380
Cdd:MTH00068 329 LANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWS--NWTILITGLGTLITAA- 405

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 52220947  381 YSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLL 429
Cdd:MTH00068 406 YTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELI 454
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 24-431 1.98e-66

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 218.70  E-value: 1.98e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   24 SLVMLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWIGFVLI------FSKINQPKIYNKSVFMMLILLMMTFYSWNL 97
Cdd:MTH00205  31 GLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVlasykvFKSNKNSKLFTVSVIMLLLILILSFSVDNL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   98 MMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLP-------FITTMMNNSTNLSLWNIQYMEMNKWEYLS 170
Cdd:MTH00205 111 LLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPlliglffLNSLNFSLSMFFNFPLNFSDFYLFLYWIF 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  171 LMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLSMICFM 250
Cdd:MTH00205 191 LMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLR 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  251 QTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMM 330
Cdd:MTH00205 271 QVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLM 350

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  331 WFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMTtimFSSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMN 410
Cdd:MTH00205 351 WFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLIS---FLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYY 427

                        410       420
                 ....*....|....*....|.
gi 52220947  411 TTSMLIIPMIMISINPDLLII 431
Cdd:MTH00205 428 ILILHWFPLNILILKLKIFIC 448
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 71-428 5.55e-60

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 202.05  E-value: 5.55e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   71 INQPKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNS 150
Cdd:MTH00110  89 LTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQ 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  151 TNLSLWNIQYMEM------NKWE----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTS 220
Cdd:MTH00110 169 NNLGSLNFLLLQLwaqplpNSWSnnllWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITI 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  221 TNSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFY 300
Cdd:MTH00110 249 ILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFC 328

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  301 MANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSstvVVTMTTIMFSSSL 380
Cdd:MTH00110 329 LANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNIT---IILMGLNMLITAL 405

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 52220947  381 YSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDL 428
Cdd:MTH00110 406 YSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKI 453
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 24-429 5.49e-54

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 186.31  E-value: 5.49e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   24 SLVMLMFNLNMQKQEVSKISYFMWGDELSFWTFNLSLWI-GFVLIFSK-------INQPKIYNKSVFMMLILLMMTFYSW 95
Cdd:MTH00127  35 ALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLlPLMILASQnhtapepINRQRMYITLLTSLQIFLILAFGAT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   96 NLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFIT---TMMNNSTNLSLWNIQYMEM-------NK 165
Cdd:MTH00127 115 EIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVallLLQNSTGTLSMLTLQYSQPlqlsswaDK 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  166 WEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALYLS 245
Cdd:MTH00127 195 LWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTG 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  246 MICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNP 325
Cdd:MTH00127 275 SICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILP 354

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  326 SAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMTTIMFSSSLYsifMFYIITHGMLKKSTNTVKIFN 405
Cdd:MTH00127 355 LMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLY---MFLMTQRGPLPDHIIALNPSH 431

                        410       420
                 ....*....|....*....|....
gi 52220947  406 SKNMNTTSMLIIPMIMISINPDLL 429
Cdd:MTH00127 432 TREHLLMALHLLPLLLLILKPELI 455
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 42-430 7.21e-41

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 151.39  E-value: 7.21e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  42 ISYFMWGDELSFWTFNLSLWIGFVLIFSKINQPKIYNKSvFMMLILLMMT-----FYSWNLMMFYLMFEMSMIVVLMIIM 116
Cdd:COG1008  74 ISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKRPKL-YYALLLLLEAgmigvFLALDLFLFYVFWELMLIPMYFLIG 152

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 117 TWGYqPERVEAALFMVMMTVMTSLPFITTMM-------NNSTNLSLW-NIQY-MEMNKWEYLSLMLVFMMKMPtMF-LHM 186
Cdd:COG1008 153 IWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalyflagALTFDIAELaAAPLpLTAQLLLFLAFFIAFAVKVP-MFpFHT 230

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 187 WLPKVHVESPVQGSMILASILLKLGSYGLIR----MTSTNSEMnnkLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSS 262
Cdd:COG1008 231 WLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRfalpLFPEASAY---FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 263 VVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMP 342
Cdd:COG1008 308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 343 PSINFMGELFSLKSIMNWSGTssTVVVTMTTIMFsSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMI 422
Cdd:COG1008 388 GTSGFVGEFLVLLGAFQVNPW--LAILAALGLIL-TAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464


                ....*...
gi 52220947 423 SINPDLLI 430
Cdd:COG1008 465 GLYPQPLL 472
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 75-430 1.26e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 148.29  E-value: 1.26e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   75 KIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFI--------TTM 146
Cdd:MTH00204 112 KEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLlgifqlysITG 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  147 MNNSTNLSLWNIQYmEMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTST-NSEM 225
Cdd:MTH00204 192 TTDYQILLNIKLPL-SIQKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPlFPAA 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  226 NNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIM 305
Cdd:MTH00204 271 SEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFL 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  306 YKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWsgtSSTVVVTMTTIMFSSSLYSIFM 385
Cdd:MTH00204 351 YERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY---SLGLGVLVTSGMVWSAAYSLYL 427

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 52220947  386 FYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLI 430
Cdd:MTH00204 428 YNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIII 472
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 81-430 1.28e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 148.28  E-value: 1.28e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   81 VFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNLSLWNIQY 160
Cdd:MTH00217 115 LLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  161 M-------EMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMT-STNSEMNNKLEWI 232
Cdd:MTH00217 195 LcclkiekELQYFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSwPLLPEASEYFSPL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  233 ILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSR 312
Cdd:MTH00217 275 IQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTR 354

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  313 SIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWsgtSSTVVVTMTTIMFSSSLYSIFMFYIITHG 392
Cdd:MTH00217 355 LIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY---SYIVGVLASLGMVLSAGYSIYLYNRVCFG 431

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 52220947  393 MLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLI 430
Cdd:MTH00217 432 APSKYLYFSRDLNRREFYVLLPLVFLIYLMGIFPFIII 469
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 59-422 6.38e-38

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 143.54  E-value: 6.38e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947    59 SLWIGFVLIFSKINQPKIYNKSVFMMLILLMMT---FYSWNLMMFYLMFEMSMIVVLMIIMTWGyQPERVEAALFMVMMT 135
Cdd:TIGR01972  87 ALLTLLAILASWESIQKRVKEFYALLLLLEAGVigvFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYT 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   136 VMTSLPFITTMM------NNSTNLSLWNIQYMEMN--KWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASIL 207
Cdd:TIGR01972 166 LAGSLLMLLAILglyflgGGTFDLLELLNLPLPFGvqTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVL 245

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   208 LKLGSYGLIRMTST-NSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMY 286
Cdd:TIGR01972 246 LKMGTYGFLRFNLPlFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVF 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   287 IMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNP--SAMMMWFFmcMSNSPMPPSINFMGELFSLksimnwSGTS 364
Cdd:TIGR01972 326 QMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPvlAAFFMLFA--MASLGLPGTSGFVGEFLIL------LGSF 397

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52220947   365 STVVVTMTTIMFSSSLYSIFMFYIITHGML-KKSTNTVKIFNSKNMNTTSMLIIPMIMI 422
Cdd:TIGR01972 398 KVNPVVAFLAALGIVLAAAYMLTLYKRVFFgELSNPEVAEFPDLNGREIAVLAPLVVLI 456
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 42-429 1.35e-37

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 142.65  E-value: 1.35e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   42 ISYFMWGDELSFWTFNLSLWIGFVLIFSKINQPKIYNKSVF----MMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMT 117
Cdd:PRK05846  74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEIKKRVKFYMaallWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGV 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  118 WGYqPERVEAAL--FM-------VMMTVMTSLPFITTMMNNSTNLSLW--NIQYMEMNKWEYLSLMLVFMMKMPTMFLHM 186
Cdd:PRK05846 154 WGG-KNRIYAATkfFLytllgslLMLVAIIYLVVVYYNATGTFDIADLlnLPLPPGVQYWLFLAFFIAFAVKMPMFPLHT 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  187 WLPKVHVESPVQGSMILASILLKLGSYGLIR----MTSTNSEMnnkLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSS 262
Cdd:PRK05846 233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRfslpLFPDASHE---FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  263 VVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSII----INKSMfSMNPSAMMmwfFMCMSN 338
Cdd:PRK05846 310 ISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIAdyggLAKVM-PVLAAFFL---FFAMAS 385

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  339 SPMPPSINFMGELFSLKSImnWSGTSSTVVVTMTTIMFsSSLYSIFMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIP 418
Cdd:PRK05846 386 LGLPGTSGFVGEFLILLGS--FQVNPVIAFIATTGLIL-AAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVAL 462

                        410
                 ....*....|.
gi 52220947  419 MIMISINPDLL 429
Cdd:PRK05846 463 LLLLGVYPKPL 473
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 94-361 1.87e-37

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 137.83  E-value: 1.87e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947    94 SWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMM-----NNSTNLS-LWNIQYMEMNKWE 167
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISlmynyTGTLSFDeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   168 ----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEWIILSFSLWTALY 243
Cdd:pfam00361  81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   244 LSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMA-NIMYKNSKSRSIIINKSMFS 322
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 52220947   323 MNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWS 361
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 81-430 6.33e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 138.13  E-value: 6.33e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   81 VFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALF---------MVMMTVMTSLPFITTMMNNST 151
Cdd:MTH00226 137 MLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYfffytligsVLMLLCLFSLYNIHGTTDYLT 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  152 NLSLWNIQYMEMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMN-NKLE 230
Cdd:MTH00226 217 LASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGaQNLA 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  231 WIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSK 310
Cdd:MTH00226 297 PAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHH 376

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  311 SRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMTTImfsSSLYSIFMFYIIT 390
Cdd:MTH00226 377 TRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVIL---SAVYSFYFANRVT 453

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 52220947  391 HGMLKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLI 430
Cdd:MTH00226 454 FGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFIL 493
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 53-387 4.75e-33

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 128.49  E-value: 4.75e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   53 FWTFNLSLWIGFVLIFSKINQPKIYnksVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMV 132
Cdd:MTH00094  43 LLIFMMVFILGLVLLSEKNFNLLIL---SNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  133 MMTVMTSLPFITTMMNNSTNLSLWNIQYMEMNKWEYLsLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGS 212
Cdd:MTH00094 120 FYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFI-LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGT 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  213 YGLIRMTSTNSEMNNKLeWIIlsFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHG 292
Cdd:MTH00094 199 AGFLRILGSLNFVYNNF-WII--FSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHG 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  293 TCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMT 372
Cdd:MTH00094 276 YTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYF 355

                        330
                 ....*....|....*
gi 52220947  373 TIMFSSSLYSIFMFY 387
Cdd:MTH00094 356 LVSFYYSLFLIVSSF 370
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 72-314 9.24e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 106.27  E-value: 9.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   72 NQPKIYnksVFMMLILL---MMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQpERVEAALFMVMMTVMTSLpFI----- 143
Cdd:PRK12561  84 RKPRLF---YFLMLVLYsaqIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASI-FIlvagl 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  144 ------TTMMNNSTNLSLWNIQyMEMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIR 217
Cdd:PRK12561 159 alalsgDTFTFDLAELGAKSYP-LALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIR 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  218 MtstNSEM----NNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGT 293
Cdd:PRK12561 238 F---NVQMlpdaHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGL 314

                        250       260
                 ....*....|....*....|.
gi 52220947  294 CSAGLFYMANIMYKNSKSRSI 314
Cdd:PRK12561 315 IAAALFFLTGVTYERTHTLSI 335
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 64-390 2.04e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 104.46  E-value: 2.04e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  64 FVLIFSKINQPKIYNKSVFMMLILLMMT-----FYSWNLMMFYLMFEMSMIVVLMIIMTWGYqPERVEAALFMVMMTVMT 138
Cdd:COG0651  91 AVLLYSIGYMRHERRGRRFYPLFLLLLAgmngaFLTGDLFNLFVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVG 169

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 139 SLPF-----ITTMMNNSTNLSLWNIQYMEMNKWE----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLK 209
Cdd:COG0651 170 SALFllgvgLLYGATGTLNMADLAARLAELDPGLllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTK 249

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 210 LGSYGLIRMTST--NSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYI 287
Cdd:COG0651 250 VGVYAILRVLTLlfGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFH 329

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947 288 MIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTV 367
Cdd:COG0651 330 LLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAA 409

                       330       340
                ....*....|....*....|...
gi 52220947 368 VVTMTTIMfssSLYSIFMFYIIT 390
Cdd:COG0651 410 VLLLSSLL---TLAYFVRIFGRA 429
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
42-314 2.31e-22

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 99.00  E-value: 2.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   42 ISYFMWGDELSFWTFNLSLWIGFVLIFS---KINQPKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTW 118
Cdd:PRK06473  71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSsdeSIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIW 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  119 GYQPERVEAALFMVMMTV--------------MTSLPFITTMMNNSTNLSLwNIQYMEMnkweyLSLMLVFMMKMPTMFL 184
Cdd:PRK06473 151 GGQRRGYAATKFLLYTAIsgililvsflglvwLSGASSFDYEPLRSHTLPL-STQLLLL-----APILVGFGIKIPLVPF 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  185 HMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTstnseMNNKLE-WIILSFSLWT-----ALYLSMICFMQTDLKTMI 258
Cdd:PRK06473 225 HTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFG-----VGLFPEaWVYLAPWLATwavvsVLYGASCAIAQKDMKKMV 299

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 52220947  259 AYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSI 314
Cdd:PRK06473 300 AYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDV 355
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 74-306 6.19e-19

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 89.00  E-value: 6.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   74 PKIYNKSVFMMLILLM-----MTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQpERVEAALFMVMMTVMTSLpFIT---- 144
Cdd:PRK02546 109 PVTFKPKLFYFLMLAMyggqiAVFAVQDMLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSL-FILlaal 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  145 -------TMMNNSTNLSLWNIQyMEMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIR 217
Cdd:PRK02546 187 amafygdTPTFDMTALAAKDFG-LGFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLR 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  218 MtstNSEM----NNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGT 293
Cdd:PRK02546 266 M---NAGMlpdaHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGL 342

                        250
                 ....*....|...
gi 52220947  294 CSAGLFYMANIMY 306
Cdd:PRK02546 343 IGASLFFLVGATY 355
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
57-312 5.59e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 82.84  E-value: 5.59e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   57 NLSLWIGFVLIFSKINQPKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQpERVEAALFMVMMTV 136
Cdd:PRK07363  89 SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTA 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  137 MTSLPFITT-----MMNNSTNLSLWNI--QYMEMNKWEYLSLMLV--FMMKMPTMFLHMWLPKVHVESPVQGSMILASIL 207
Cdd:PRK07363 168 VSGLLVLAAflgivWLSGSTSFDYDAIstQNLSLNTQLILLTGLLlgFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVL 247

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  208 LKLGSYGLIRMtstnsemnnKLE-----WIILSFSLW-----TALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDK 277
Cdd:PRK07363 248 AKLGTYGLLRF---------GLQlfpqtWSLVAPGLAiigtiSVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGT 318

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 52220947  278 SKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSR 312
Cdd:PRK07363 319 QLSLLGAVAQMISHGLILALLFHLVGIVERKVGTR 353
ndhD CHL00011
NADH dehydrogenase subunit 4
 78-306 7.79e-17

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 82.30  E-value: 7.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   78 NKSVFMMLILLMMT-----FYSWNLMMFYLMFEMSMIVVLMIIMTWGYQpERVEAALFMVMMTVMTSLPF---ITTMMNN 149
Cdd:CHL00011 110 NSRLFYFLMLAMYSgqiglFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLligVLGMGLY 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  150 STNLSLWNIQY-------MEMNKWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMtstN 222
Cdd:CHL00011 189 GSNEPTLNFETlanqsypVALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI---N 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  223 SEMNNKLEWIilsFSLWTAL-------YLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCS 295
Cdd:CHL00011 266 MELLPHAHSI---FSPWLVIvgaiqiiYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIG 342

                        250
                 ....*....|.
gi 52220947  296 AGLFYMANIMY 306
Cdd:CHL00011 343 AALFFLAGTSY 353
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 49-356 1.70e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 80.74  E-value: 1.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   49 DELSFWTFNLSLWIGFVLIFSKINQpkIYNKSVFMMLILL---MMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERV 125
Cdd:MTH00062  44 DSLSFYLILLVLFLGLYSQVMFYNL--LSGVSRFFLFLSLifsILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERY 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  126 EAALFMVMMTVMTSLP-----FITTMMNNSTNLSLWNIQYMEMNkWEYLSLMLVFMMKMPTMFLHMWLPKVHVE--SPVq 198
Cdd:MTH00062 122 LASWYFLGYLLLTSLPlllclLYLSLVNGSFNFSDWGSDDSVSL-IVYYVLSFMFITKVPLFPFHTWLPIVHAEasSPV- 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  199 gSMILASILLKLGSYGLIRMTSTNSEMNNkleWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKS 278
Cdd:MTH00062 200 -SIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLFLCCLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDW 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52220947  279 KSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKS 356
Cdd:MTH00062 276 SSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSS 353
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 83-388 1.49e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 69.01  E-value: 1.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   83 MMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQpERVEAALFMV------MMTVMTSLPFITTMMNNSTNLSLW 156
Cdd:PRK08676 110 LLLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSAR-ENIDAALKYIfiastaMIFAFIGLIFLFSLTRQALGTGTL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  157 NIQYMEMNKWEYLSLMLV---------FMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTST--NSEM 225
Cdd:PRK08676 189 NWTELAAHASLLSPSVLGasflfifigFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALlrQSGA 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  226 NNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIM 305
Cdd:PRK08676 269 AEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGIL 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  306 YKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSimnwSGTSSTVVVTMTTIMFSSSLYSIFM 385
Cdd:PRK08676 349 HRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQ----LGGISVWLVLAVLLLLLLAASSFAI 424


                 ...
gi 52220947  386 FYI 388
Cdd:PRK08676 425 FLL 427
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 184-421 1.05e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 60.33  E-value: 1.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  184 LHMWLPKVHVESPVQGSMILASILLKLGSYGLIR--MTSTNSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYS 261
Cdd:PRK06458 233 MHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYS 312

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  262 SVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPM 341
Cdd:PRK06458 313 SIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGM 392

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  342 PPSINFMGELFSLKSIMN---WSGTssTVVVTMTTIMFSSslysifMFYIITHGMLKKSTNTVKIFNSKNMNTTSMLIIP 418
Cdd:PRK06458 393 PPFGVFISEFLILTAGLArgpLLIA--ILLLLLLTLAFAA------LVRRVAGMVFGEPPEAVNRGDLGWLTTSPMFVHL 464


                 ...
gi 52220947  419 MIM 421
Cdd:PRK06458 465 VLV 467
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 80-382 1.19e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 60.13  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   80 SVFMMLILLMM--TFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLpFITTMM------NNST 151
Cdd:PRK08667 114 SALTALFILSMlgVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTV-FLMLGIivlfiqTGSF 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  152 NLSLWNIQYMEMNkWEYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMNNKLEW 231
Cdd:PRK08667 193 ELSPLGASAGILS-LVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGV 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  232 IILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLD-----------KSKSMLGGMYIMIGHGTCSAGLFY 300
Cdd:PRK08667 272 LILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYvifgvygldtlALLALGGALFHSLNHALFKSLLFL 351

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  301 MANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKS-IMNWSGTSSTVVVTMTTIMFSSS 379
Cdd:PRK08667 352 TAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESfFQSFSVADPLIKILLFSVLAIFA 431


                 ...
gi 52220947  380 LYS 382
Cdd:PRK08667 432 LTS 434
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 182-306 6.25e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 57.65  E-value: 6.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  182 MFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMtstnSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYS 261
Cdd:PRK07234 201 FVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC----ALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFS 276

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 52220947  262 SVVHMTLVFATitldkskSMLGGMYiMIGHGTCSAGLFYMANIMY 306
Cdd:PRK07234 277 TISQLGFILAA-------PLVGGLY-ALAHGLVKSTLFLCAGALP 313
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 171-314 1.23e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.81  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  171 LMLVFMM-KMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTST----NSEMNNKLEWIILSFSLWTALYLS 245
Cdd:PRK08375 207 FVLLALAlKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTvfggDFRFALGLGWLLAVLALLSMLVGS 286

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52220947  246 MICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSI 314
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRL 355
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 80-299 8.38e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 54.20  E-value: 8.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   80 SVFM--MLILLM---MTFYSWNLMMFYLMFEMsMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFIT--TMMNNST- 151
Cdd:PRK12665 111 SIFLptYLILVAgvsNAFLAGDLFNLYVGFEI-LLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIgiALVYAATg 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  152 --NLSLWNIQYMEMNKWE----YLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTS---TN 222
Cdd:PRK12665 190 tlNMADLAVRLDELPSGTrtalFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTllfPG 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  223 SEMNNKLewiilsfsLWTALyLSMI-----CFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAG 297
Cdd:PRK12665 270 GGLDTLL--------MVVAL-LTMVvgilgAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTT 340


                 ..
gi 52220947  298 LF 299
Cdd:PRK12665 341 LF 342
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 33-312 3.13e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.22  E-value: 3.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   33 NMQKQEVSKISYFMWGDELSF------WTFNL-SLWIGFVLIFSKINQpKIYNKSVFMMLILLMMT-----FYSWNLMMF 100
Cdd:PRK08668  45 TLKVGTGEKLTLFFGGFKLTFtlthlsWFFAMiSLLVIFSVAFFMVSE-KTKNDAYFNMFALMSLAgvlgvFLANDLLTL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  101 YLMFEMSMIVVLMIIMTwGYQPERVEAALFMVMMTVMTSLPFITTMM--NNSTNLSLWNIQYMEMN------KWEYLSLM 172
Cdd:PRK08668 124 YIFWEIMTFSSFMMVPM-GKKESRKASLKYFVLSAIGAYAMLYAIFLiyAKTGTFDFADISQGLINdtstgfALIVFLFL 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  173 LVFMMKMPTMF-LHMWLPKVHVESPVQGSMILASILLKLGSYGLIRM------TSTNSEMN-----NKLEWIILSFSLWT 240
Cdd:PRK08668 203 LAFGVAKAGIFpLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVlyvlpgTKLFSEFGtyrgvPLFNYILAWLGNIS 282

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52220947  241 ALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFY-MANIMYKNSKSR 312
Cdd:PRK08668 283 IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLiFAAVIYRTGTTK 355
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 184-275 4.65e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 48.73  E-value: 4.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  184 LHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMT---STNSEMnnkleW---IILSFSLWTALYLSMICFMQTDLKTM 257
Cdd:PRK06521 229 LHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVfdlLGAPGW-----WwgvLVLALGAISAVLGVLYALAEHDLKRL 303

                         90
                 ....*....|....*...
gi 52220947  258 IAYSSVVHMTLVFATITL 275
Cdd:PRK06521 304 LAYSTIENIGIIFVGLGL 321
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-403 9.86e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.50  E-value: 9.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  140 LPFITTMMNNSTNLSLWNIQYMEMNKWEYLSLMLVFMM-KMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRM 218
Cdd:PRK06589 184 LPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIaKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKI 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  219 T------STNSEMNNKLEWIILSfSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHG 292
Cdd:PRK06589 264 LlyifglSYLQRIFAEFNWLIFI-PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHS 342

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  293 TCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNwSGTSSTVVVTMT 372
Cdd:PRK06589 343 FAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASE-QNQPWLSIIVML 421

                        250       260       270
                 ....*....|....*....|....*....|.
gi 52220947  373 TIMFSSSLYSIFMFYIITHGMLKKSTNTVKI 403
Cdd:PRK06589 422 VVIASSILSALYLLKILSSIYKPSLSENSFI 452
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 184-299 1.05e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.37  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  184 LHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMN--NKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYS 261
Cdd:PRK08377 225 LNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYS 304

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 52220947  262 SVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLF 299
Cdd:PRK08377 305 SIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLF 342
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 171-385 1.34e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.17  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  171 LMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTS----TNSEMNNKLewiILSFSLWTALYLSM 246
Cdd:PRK07691 215 FLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTlffsHDTSFTHYL---ILILALLTIIFGVI 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  247 ICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPS 326
Cdd:PRK07691 292 GAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPV 371

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 52220947  327 AMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTSSTVVVTMTTIMFSSSLYSIFM 385
Cdd:PRK07691 372 LGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFL 430
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 81-424 1.59e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 43.66  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   81 VFMMLILLMMTFYSWNLMMFYLMFEMSMIVvLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNLSLWNIQY 160
Cdd:MTH00160  11 LSTLIMGTLISISSNSWFGAWMGLEINLLS-FIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNIS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  161 MEMnkweylsLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASIllklgsyglIRMTSTNSEMNNKLEWIILSFSLWT 240
Cdd:MTH00160  90 SML-------INSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTW---------QKIAPLILLSYLINNNFIIIIIILS 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  241 ALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKsksMLGGMYIMIghgtcSAGLFYMANIMYKNSKSRSIIINKSM 320
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISE---NLWLIYFLI-----YSIISLSIILLFNKFNIFFLNQLFNS 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  321 FSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNwsgtssTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNT 400
Cdd:MTH00160 226 NNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLIS------NNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNK 299

                        330       340
                 ....*....|....*....|....
gi 52220947  401 VKIFNSKNMNTTSMLIIPMIMISI 424
Cdd:MTH00160 300 NKWNLKKKKNKFSLILNFLSFISL 323
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 74-431 2.45e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 43.03  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   74 PKIYNKSVFMMLILLMMTFYSWNLMMFYLMFEMSMIVVLMIIMTWGYQPERVEAALFMVMMTVMTSLPFITTMMNNSTNL 153
Cdd:MTH00200   3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  154 SlWNIQYMEMNKWEYLsLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILlKLGsyGLIRMTSTNSEMNNkleWII 233
Cdd:MTH00200  83 Q-WGISEMLGPLSETL-ILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQ-KLA--PFALLIQLAPALNS---NIL 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  234 LSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVfatITLDKSKSMLGGMYIMIgHGTCSAGLFymanIMYKNSKSRS 313
Cdd:MTH00200 155 LLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWL---LSGLVYSPNLALLYLLL-YVIITLTVF----LLLNLLNSTK 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  314 IIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSgtsstvVVTMTTIMFSSSLYSIFMFYIITHGM 393
Cdd:MTH00200 227 INSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG------LFIYATILLLGSLLSLFFYLRLSYLT 300

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 52220947  394 LKKSTNTVKIFNSKNMNTTSMLIIPMIMISINPDLLII 431
Cdd:MTH00200 301 LLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPL 338
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 169-421 2.97e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  169 LSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSEMN-----NKLEWIILSFSLWTALY 243
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKANfvfttLPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  244 LSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSM 323
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  324 NPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMnwsgtSSTVVVTMTTIMFSSSLYSIFMFYIITHGMLKKSTNTVKI 403
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFI-----KSNAWIGLVVLLVGSGLSVIYVWKIVEALYFESRMVESKA 447

                        250
                 ....*....|....*...
gi 52220947  404 FNSKNMNTTSMLIIPMIM 421
Cdd:PRK12662 448 NDKAFKTPNAMVLCIWIM 465
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-314 3.64e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 3.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   48 GDELSFWTFNLSLWIGF------VLIFS--------KINQPKIYNKSVFMMLILLMMTFySWNLMMFYLMFEMSMIVVLM 113
Cdd:PRK12649  71 GVEFSIYADGLAVLIGLiasgigVIIMSysngymshKEDLPRYYQYLLLFMGSMIGMVF-SGNTIQLFIFWELTSITSFM 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  114 IIMTWGYQPERVEAA-----------LFM----VMMTVMTSLPFITTMMNNSTNLSlwNIQYMEMNkweYLSLMLVFM-- 176
Cdd:PRK12649 150 LIGYWRHRPESVYGAtksllitagggLFMfagfLLLHVITGTYDIATILQDSELIE--NIKGHPLF---LITLILIFIga 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  177 -MKMPTMFLHMWLPKVhVESPVQGSMILAS-ILLKLGSYGLIRMTSTNSEMNnklEWIIL--SFSLWTALYLSMICFMQT 252
Cdd:PRK12649 225 aAKSAQGPFYIWLPNA-MEAPTPVSAFLHSaTMVKAGVYLVARIHPIFSGTE---AWFILvsGTGMITMVLAGFLAFRQT 300

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52220947  253 DLKTMIAYSSVVH----MTLVFATITLDKSKSMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSI 314
Cdd:PRK12649 301 DIKAILAYSTISQlaylMTMYGYTTYHEPGLGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDI 366
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 184-350 9.75e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 9.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  184 LHMWLPKVHVESPVQGSMILASILLKLGSYGLIRMTSTNSemNNKLEW--IILSFSLWTALYLSMICFMQTDLKTMIAYS 261
Cdd:PRK08042 199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGG--NAPLWWgvALLVLGMITAFVGGLYALMEHNIQRLLAYH 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  262 SVVHMTLVF-------ATITLDKSK----SMLGGMYIMIGHGTCSAGLFYMANIMYKNSKSRSII----INKSMFSMnpS 326
Cdd:PRK08042 277 TLENIGIILlglgagvTGIALEQPAlialGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEklggIGKKMPVI--S 354

                        170       180
                 ....*....|....*....|....
gi 52220947  327 AMMMWFFMCMsnSPMPPSINFMGE 350
Cdd:PRK08042 355 IAMLVGLMAM--AALPPLNGFAGE 376
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
68-377 1.83e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   68 FSKINqpKIYNKSVFMMLILLMMT-----FYSWNLMMFYLMFEMSMIVVLMIImTWGYQPERVEAALFMVMMTVMTSLPF 142
Cdd:PRK12663  98 FGDIE--HSGRRYGFPPFILLLMAgvigsFLTGDLFNLYVWFEVMLIASFVLI-TLGQEREQLRGAIKYVVLNLIGSWLF 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  143 ITTM-----MNNSTNLSLWNIQYMEMNKWEYLS-----LMLVFMMKmPTMFLHMWLPKVHVESPVQGSMILASILLKLGS 212
Cdd:PRK12663 175 LLGIgllygTFGTLNMAHIAMRLNDMGDTATLTtiallFLLAFGMK-AALFPFMWLPAAYHTPNTEVAALFAALLTKVGI 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  213 YGLIRMTStnseMNNKLEWIILSFSLWTALYLSMI-----CFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGMYI 287
Cdd:PRK12663 254 YALIRVFT----LLFPQERELLHPLLATMAAITMVigalgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFY 329

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  288 MIGHGTCSAGLFYMANIMYKNSKSRSIIINKSMFSMNPSAMMMWFFMCMSNSPMPPSINFMGELFSLKSIM---NWSGTS 364
Cdd:PRK12663 330 LVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALdngAYILLA 409

                        330
                 ....*....|...
gi 52220947  365 STVVVTMTTiMFS 377
Cdd:PRK12663 410 LMLITSLIT-MYS 421
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 82-302 2.39e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.96  E-value: 2.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   82 FMMLILL--MMTF-YSWNLMMFYLMFEmsmivvLMIIMTWG----YQ-PERVEAALFMVMMTVMTSLPFIT---TMMNNS 150
Cdd:PRK06525 117 AFLLLFIgaMAGLvYSSTLLGLLLFFE------ITGLCSWAlisyYQsPKALRSALKALLITHIGSLGLYLaaaTLFLQT 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  151 TNLSLWNIQYM--EMNKWEYLSLMLVFMMKMPTMFLHMWLPKVhVESPVQGSMIL-ASILLKLGSYGLIRMTSTNSEMNN 227
Cdd:PRK06525 191 GTFALSALSGLhgSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPH 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52220947  228 KLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSML---GGMYIMIGHGTcSAGLFYMA 302
Cdd:PRK06525 270 VIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLaleGSIAYIFNHAF-AKSLFFLV 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 89-422 3.74e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 39.04  E-value: 3.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947   89 MMTFYSWNLMMFYLMFEMSMIVVLMIIMTwGYQPERVEAAL--FMVMMTVMTSLPFITTMmnNSTNLSLWNIQYMEmNKW 166
Cdd:MTH00112  18 IITISSNHWLMAWTGLEINTLAIIPLISK-PHHPRATEAATkyFLTQAAASALILFSSTT--NAWNTGQWDITQLT-NPT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  167 EYLSLMLVFMMKMPTMFLHMWLPKVHVESPVQGSMILASiLLKLGSYGLIRMTSTNSEMNnklewIILSFSLWTALYLSM 246
Cdd:MTH00112  94 SCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST-WQKLAPLTLLLMTSNSLNPT-----LLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  247 ICFMQTDLKTMIAYSSVVHMTLVFATITLDKSKSMLGGM-YIMIghgtcSAGLFYMANIMyknsKSRSIIINKSMFSMNP 325
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYiYILM-----TTPMFLTLNTT----STKTLKDMMTSWTKSP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  326 SAMMMWFFMCMSNSPMPPSINFMGELFSLKSIMNWSGTsstvvvTMTTIMFSSSLYSIFMF----YIITHGMLKKSTNTV 401
Cdd:MTH00112 239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMT------PTATIMAMLSLLSLFFYlrltYISTITLPPNTTNMM 312

                        330       340
                 ....*....|....*....|...
gi 52220947  402 KI--FNSKNMNTTSMLIIPMIMI 422
Cdd:MTH00112 313 MKwrTKPKKNTLTATLTTLSTLL 335
PRK12650 PRK12650
DUF4040 family protein;
185-273 3.82e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.64  E-value: 3.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  185 HMWLPKVHV-ESPVqgSMIL-ASILLKLGSYGLIRMtSTNSEMNNKLEWIILSFSLWTALYLSMICFMQTDLKTMIAYSS 262
Cdd:PRK12650 228 HFWLPEAMAaITPV--SAFLhAAAVVKAGIYLLLRF-SPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYST 304

                         90
                 ....*....|.
gi 52220947  263 VVHMTLVFATI 273
Cdd:PRK12650 305 VSQLGWIVATI 315
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 185-307 7.03e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.75  E-value: 7.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220947  185 HMWLPKVhVESPVQGSMILAS-ILLKLGSYGLIRMtstNSEMNNKLEW--IILSFSLWTALYLSMICFMQTDLKTMIAYS 261
Cdd:PRK12647 215 HFWLPNA-MEAPTPVSAYLHSaTMVKAGIYLLARL---NPVLGGTPLWqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 52220947  262 SVvhmtlvfatitldkskSMLGGMYIMIGHGT----CSAGLFYMANIMYK 307
Cdd:PRK12647 291 TV----------------SALGTLVMLLGLGSelaiKAAVLFLVAHSLYK 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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