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Conserved domains on  [gi|62327105|ref|YP_223893|]
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tail completion or Neck1 protein [Lactobacillus phage phiJL-1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HK97-gp10_like super family cl12124
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 9-123 6.28e-09

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


The actual alignment was detected with superfamily member TIGR01725:

Pssm-ID: 448411  Cd Length: 119  Bit Score: 50.11  E-value: 6.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327105     9 FKGVDKLLDEFD-ISRKELVPYSVEAMKTSLSRAVEKSKGLARVDTGYMRNNIQQDEVKE-EHGV--VTGRYVARADYSS 84
Cdd:TIGR01725   1 FTGLDELLQKLEkLGKKVDKEKVRKALKAGANVIRAKLKSNAPVSKGKKHGSLRDSIVKQkDNGVlsVTVGPGKTAWYAR 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 62327105    85 YNEYGTYRMSAQPFMAPSVAAMTPFFYKAVRDALNKAAK 123
Cdd:TIGR01725  81 FLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 9-123 6.28e-09

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 50.11  E-value: 6.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327105     9 FKGVDKLLDEFD-ISRKELVPYSVEAMKTSLSRAVEKSKGLARVDTGYMRNNIQQDEVKE-EHGV--VTGRYVARADYSS 84
Cdd:TIGR01725   1 FTGLDELLQKLEkLGKKVDKEKVRKALKAGANVIRAKLKSNAPVSKGKKHGSLRDSIVKQkDNGVlsVTVGPGKTAWYAR 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 62327105    85 YNEYGTYRMSAQPFMAPSVAAMTPFFYKAVRDALNKAAK 123
Cdd:TIGR01725  81 FLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 9-123 6.28e-09

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 50.11  E-value: 6.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327105     9 FKGVDKLLDEFD-ISRKELVPYSVEAMKTSLSRAVEKSKGLARVDTGYMRNNIQQDEVKE-EHGV--VTGRYVARADYSS 84
Cdd:TIGR01725   1 FTGLDELLQKLEkLGKKVDKEKVRKALKAGANVIRAKLKSNAPVSKGKKHGSLRDSIVKQkDNGVlsVTVGPGKTAWYAR 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 62327105    85 YNEYGTYRMSAQPFMAPSVAAMTPFFYKAVRDALNKAAK 123
Cdd:TIGR01725  81 FLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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