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Conserved domains on  [gi|62327246|ref|YP_223984|]
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portal protein [Alphaproteobacteria phage PhiJL001]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4055 super family cl16196
Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. ...
 275-411 8.59e-11

Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 140 amino acids in length.


The actual alignment was detected with superfamily member pfam13264:

Pssm-ID: 433070  Cd Length: 135  Bit Score: 59.65  E-value: 8.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327246   275 PLLGLSNLVLTIYRGEADYRQSLFNQGQDTLVTIGANLQDEQArVGANARLDLPTDADAKYIGVDSSGLSEQREALTNDY 354
Cdd:pfam13264   1 PLLDLADLNIAHWQSSSDQDNILHFARVPILVVSGLEEGDPLA-IGSGTAIVLPDGAAAGYVEHSGAAIAAGKTDLDRLE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62327246   355 NRAAQKGGQLLDSvSRERESGEALTVRVAARTATLNQIAITGAFGLQQTLRHIATWI 411
Cdd:pfam13264  80 AQMATLGARLLAR-KTGTETATQAAIDAAAENSVLALMALNLEDALDQALRWMAEWL 135
 
Name Accession Description Interval E-value
DUF4055 pfam13264
Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. ...
 275-411 8.59e-11

Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 140 amino acids in length.


Pssm-ID: 433070  Cd Length: 135  Bit Score: 59.65  E-value: 8.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327246   275 PLLGLSNLVLTIYRGEADYRQSLFNQGQDTLVTIGANLQDEQArVGANARLDLPTDADAKYIGVDSSGLSEQREALTNDY 354
Cdd:pfam13264   1 PLLDLADLNIAHWQSSSDQDNILHFARVPILVVSGLEEGDPLA-IGSGTAIVLPDGAAAGYVEHSGAAIAAGKTDLDRLE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62327246   355 NRAAQKGGQLLDSvSRERESGEALTVRVAARTATLNQIAITGAFGLQQTLRHIATWI 411
Cdd:pfam13264  80 AQMATLGARLLAR-KTGTETATQAAIDAAAENSVLALMALNLEDALDQALRWMAEWL 135
 
Name Accession Description Interval E-value
DUF4055 pfam13264
Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. ...
 275-411 8.59e-11

Domain of unknown function (DUF4055); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 140 amino acids in length.


Pssm-ID: 433070  Cd Length: 135  Bit Score: 59.65  E-value: 8.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62327246   275 PLLGLSNLVLTIYRGEADYRQSLFNQGQDTLVTIGANLQDEQArVGANARLDLPTDADAKYIGVDSSGLSEQREALTNDY 354
Cdd:pfam13264   1 PLLDLADLNIAHWQSSSDQDNILHFARVPILVVSGLEEGDPLA-IGSGTAIVLPDGAAAGYVEHSGAAIAAGKTDLDRLE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62327246   355 NRAAQKGGQLLDSvSRERESGEALTVRVAARTATLNQIAITGAFGLQQTLRHIATWI 411
Cdd:pfam13264  80 AQMATLGARLLAR-KTGTETATQAAIDAAAENSVLALMALNLEDALDQALRWMAEWL 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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