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Conserved domains on  [gi|71842288|ref|YP_277376|]
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ribosomal protein S16 (chloroplast) [Emiliania huxleyi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 1.87e-37

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 119.77  E-value: 1.87e-37
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71842288  1 MLKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFN--RIVERLKTGAQPTETVRNIFLKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDeeRAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 1.87e-37

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 119.77  E-value: 1.87e-37
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71842288  1 MLKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFN--RIVERLKTGAQPTETVRNIFLKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDeeRAQYWLSKGAQPTDTVAKLLKKA 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-77 8.67e-37

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 118.11  E-value: 8.67e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71842288    2 LKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDE--THLKFNRIVERLKTGAQPTETVRNIFLKAKVF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
rps16 CHL00005
ribosomal protein S16
 1-80 2.00e-34

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 112.43  E-value: 2.00e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71842288   1 MLKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFNRIVERLKTGAQPTETVRNIFLKAKVFDAL 80
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKEL 80
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 4.11e-25

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 88.20  E-value: 4.11e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71842288    8 RFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETH----LKFNRIVERLKTGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEprvkLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 1.87e-37

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 119.77  E-value: 1.87e-37
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71842288  1 MLKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFN--RIVERLKTGAQPTETVRNIFLKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDeeRAQYWLSKGAQPTDTVAKLLKKA 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-77 8.67e-37

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 118.11  E-value: 8.67e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71842288    2 LKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDE--THLKFNRIVERLKTGAQPTETVRNIFLKAKVF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
rps16 CHL00005
ribosomal protein S16
 1-80 2.00e-34

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 112.43  E-value: 2.00e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71842288   1 MLKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFNRIVERLKTGAQPTETVRNIFLKAKVFDAL 80
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKEL 80
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 4.11e-25

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 88.20  E-value: 4.11e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71842288    8 RFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETH----LKFNRIVERLKTGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEprvkLDEERIKYWLGVGAQPT 61
rpsP PRK14521
30S ribosomal protein S16; Provisional
 3-70 4.41e-24

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 89.07  E-value: 4.41e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71842288    3 KIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTD--ETHLKFNRIVERLKTGAQPTETVRNI 70
Cdd:PRK14521   4 KIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNpaTVDLNFDRAVYWLMNGAQPTDTARNI 73
rpsP PRK14520
30S ribosomal protein S16; Provisional
 3-73 4.56e-22

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 83.20  E-value: 4.56e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71842288    3 KIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETHLKFNRivER----LKTGAQPTETVRNIfLK 73
Cdd:PRK14520   4 KIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDS--ERaqywLSVGAQPTEPVLAL-LK 75
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-65 8.27e-10

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 50.76  E-value: 8.27e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71842288    2 LKIRLKRFGRKAQPCYRIVVTDSRVKRDGKALEEVGFYNPLTDETH-LKFNRIVERLKTGAQPTE 65
Cdd:PRK14522   3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYqLKSERIFYWLNQGAELTE 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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