|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
177-490 |
2.30e-138 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 406.23 E-value: 2.30e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 177 QEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNvGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNN 256
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKK-GAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 257 MQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILS 336
Cdd:pfam00038 80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 337 MDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQ 416
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQ 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47132620 417 CKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECR 490
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| Keratin_2_head |
pfam16208 |
Keratin type II head; |
150-174 |
1.51e-10 |
|
Keratin type II head;
Pssm-ID: 465068 [Multi-domain] Cd Length: 156 Bit Score: 60.05 E-value: 1.51e-10
10 20
....*....|....*....|....*
gi 47132620 150 IHEVSVNQSLLQPLNVKVDPEIQNV 174
Cdd:pfam16208 132 IQEVTVNQSLLQPLNLEIDPEIQRV 156
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
179-466 |
2.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 179 REQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMnVGTRPINLEPI------FQGYIDSLKRYLDGLTAERTSQNS 252
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK-IGEIEKEIEQLeqeeekLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 253 ELnnmqDLVEDYKKKYEDEINKRTAAENDfvtLKKDvdnaymikvELQSKVDLLNQEIEFLKvlydAEISQIHQSVTDTN 332
Cdd:TIGR02169 759 EL----KELEARIEELEEDLHKLEEALND---LEAR---------LSHSRIPEIQAELSKLE----EEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 333 VILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALyhskyEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAH 412
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-----ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 47132620 413 VKKQCKNVQDAIADAEQrgehALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02169 894 LEAQLRELERKIEELEA----QIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-466 |
2.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 243 LTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFL---KVLYDA 319
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeqqKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 320 EISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEAL---------YHSKYEELQVTVGRHGDSLK 390
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELeeleaeleeLESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47132620 391 EIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQR-GEHALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-466 |
6.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 6.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 230 QGYIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEinkrtaAENDFVTLKKDVDNAYMIKVELQSKVDLLNQE 309
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL------GEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 310 IEFLK---VLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVgrhg 386
Cdd:TIGR02169 317 LEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---- 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 387 dSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRG---EHALKDARNKLNDLEEALQQAKEDLARLLRDY 463
Cdd:TIGR02169 393 -KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKInelEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
...
gi 47132620 464 QEL 466
Cdd:TIGR02169 472 YDL 474
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
247-485 |
9.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 9.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 247 RTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKvlydAEISQIHQ 326
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 327 SVTDTNVilsmdnsRNLDLDSIIAEVKAQYEEIAQRSKEEAEalyhsKYEELQVTVGRHGDSLKEIKIEISELNRVIQRL 406
Cdd:TIGR02168 748 RIAQLSK-------ELTELEAEIEELEERLEEAEEELAEAEA-----EIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 407 QGEIAHVKKQCKNVQDAIADAEQRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKL 483
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
..
gi 47132620 484 LE 485
Cdd:TIGR02168 896 LE 897
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-482 |
1.66e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 341 RNLDLDSIIAEVKAQYEEIAQRSKEEAEA------------LYHSKYEELQVTVGRHGDS-------LKEIKIEISELNR 401
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEAeeeleeltaelqELEEKLEELRLEVSELEEEieelqkeLYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 402 VIQRLQGEIAHVKKQCKNVQDAIADAEQRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIA 478
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
....
gi 47132620 479 TYRK 482
Cdd:TIGR02168 383 TLRS 386
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-469 |
1.83e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 389 LKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQR---GEHALKDARNKLNDLEEALQQAKEDLARLLRDYQE 465
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRiraLEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
....
gi 47132620 466 LMNV 469
Cdd:COG4942 109 LLRA 112
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-472 |
4.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 176 AQEREQ-IKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNVGTRPINLEPIFQ-----GYIDSLKRYLDGLTAERTS 249
Cdd:TIGR02168 672 ILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisalrKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 250 QNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNA--------YMIKvELQSKVDLLNQEI----------E 311
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeelkalrEALD-ELRAELTLLNEEAanlrerleslE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 312 FLKVLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEI--AQRSKEEAEALYHSKYEELQVTVGRHGDSL 389
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 390 KEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNV 469
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987
|
...
gi 47132620 470 KLA 472
Cdd:TIGR02168 988 NLA 990
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-474 |
5.74e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 240 LDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKvlydA 319
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE----E 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 320 EISQIHQSVTDTNVILSmdnsrnlDLDSIIAEVKAQYEEIAQRSKEEAEALyhskyEELQVTVGRHGDSLKEIKIEISEL 399
Cdd:COG1196 338 ELEELEEELEEAEEELE-------EAEAELAEAEEALLEAEAELAEAEEEL-----EELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47132620 400 NRVIQRLQGEIAHVKKQCKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALD 474
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-488 |
1.28e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 350 AEVKAQYEEIAQRSKE-EAEALYHsKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADA- 427
Cdd:COG1196 209 AEKAERYRELKEELKElEAELLLL-KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAq 287
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47132620 428 --EQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEE 488
Cdd:COG1196 288 aeEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
349-488 |
2.09e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 349 IAEVKAQYEEIAQRSKEEAEAL--YHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIAD 426
Cdd:COG1196 262 LAELEAELEELRLELEELELELeeAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47132620 427 AEQRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEE 488
Cdd:COG1196 342 LEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
344-466 |
4.35e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 344 DLDSIIAEVKAQYEEIAQRsKEEAEAlyhsKYEELQVTVGRH-GDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNV-- 420
Cdd:COG4913 299 ELRAELARLEAELERLEAR-LDALRE----ELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALgl 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 47132620 421 -----QDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:COG4913 374 plpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-466 |
7.07e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 7.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 344 DLDSIIAEVKAQYEEIAQRSKEEAEAL--YHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQ 421
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELaeLEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 47132620 422 DAIADAEQRgehaLKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:COG1196 316 ERLEELEEE----LAELEEELEELEEELEELEEELEEAEEELEEA 356
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
344-485 |
1.16e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 344 DLDSIIAEVKAQYEEIAQR--SKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVK--KQCKN 419
Cdd:COG1579 14 ELDSELDRLEHRLKELPAElaELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKEYEA 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47132620 420 VQDAIADAEQR---GEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELmnvKLALDVEIATYRKLLE 485
Cdd:COG1579 94 LQKEIESLKRRisdLEDEILELMERIEELEEELAELEAELAELEAELEEK---KAELDEELAELEAELE 159
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
345-482 |
1.18e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 345 LDSIIAEVKAQYEEIAQRSKEEAEALyhSKYEELQVTVGRHGDSLKEI--KIEISELNRVIQRLQGEIAHVKKQCKNVQD 422
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAEEYQELK--EELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELRE 453
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 423 AIADAEQRGEHALKDARnkLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRK 482
Cdd:COG4717 454 ELAELEAELEQLEEDGE--LAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
349-488 |
1.67e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 349 IAEVKAQYEEIAQRSKEEAEALyhskyEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAE 428
Cdd:COG1196 234 LRELEAELEELEAELEELEAEL-----EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47132620 429 QRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEE 488
Cdd:COG1196 309 ERRRELeerLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
194-447 |
1.78e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 194 DKVRFLEQQNQVLQTKWELLQQMnvgtrpinlepifqgyIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEIN 273
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQ----------------IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 274 KRTAAENDFVTLKKDVDNAY----MIKVELQSKVDLLNQEIEFLKvlYDAEISQIHQSVTDTNVILSmdnsrnlDLDSII 349
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALnklnTAAAKIKSKIEQFQKVIKMYE--KGGVCPTCTQQISEGPDRIT-------KIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 350 AEVKAQYEEIAQRSKEEAEALyhSKYEELQVTvgrhgdsLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQ 429
Cdd:PHA02562 309 KELQHSLEKLDTAIDELEEIM--DEFNEQSKK-------LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
|
250 260
....*....|....*....|.
gi 47132620 430 RGE---HALKDARNKLNDLEE 447
Cdd:PHA02562 380 ELAklqDELDKIVKTKSELVK 400
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
318-458 |
2.43e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 318 DAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEiAQRSKEEAEALYHSKYEELQVTVGRHGD---SLKEIKI 394
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-AEAERSRLQALLAELAGAGAAAEGRAGElaqELDSEKQ 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47132620 395 EISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRGehalKDARNKLNDLEE----ALQQAKEDLAR 458
Cdd:PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRD----RESQAKIADLGRrlnvALAQRVQELNR 194
|
|
| ElaB |
COG4575 |
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ... |
395-463 |
4.18e-03 |
|
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443632 [Multi-domain] Cd Length: 108 Bit Score: 37.23 E-value: 4.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 395 EISELNRVIQRLQGEIAHVKKQCKN-VQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDY 463
Cdd:COG4575 13 SKEDLEADLKALVDDLEELLKSTADdAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDY 82
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
233-458 |
4.33e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 233 IDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDnaymikvELQSKVDLLNQEI-E 311
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA-------EAEAEIEERREELgE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 312 FLKVLYDAEisqihQSVTDTNVILSMDN-----SRNLDLDSIIAEVKAQYEEI--AQRSKEEAEALYHSKYEELQVTVGR 384
Cdd:COG3883 91 RARALYRSG-----GSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELkaDKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47132620 385 HGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLAR 458
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
273-486 |
4.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 273 NKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLkvlyDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEV 352
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 353 KAQYEEIAQRSKEEAEALY-HSKYEELQVTVGRHG--DSLKEIKIeISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQ 429
Cdd:COG4942 96 RAELEAQKEELAELLRALYrLGRQPPLALLLSPEDflDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 47132620 430 RGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEG 486
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
387-485 |
5.23e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 387 DSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90
....*....|....*....
gi 47132620 467 MNVKLALDVEIATYRKLLE 485
Cdd:TIGR02169 750 EQEIENVKSELKELEARIE 768
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
154-456 |
5.56e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 154 SVNQSLLQPLNVKVDP--EIQNVKAQEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQmnvgtrpiNLEPIFQG 231
Cdd:TIGR04523 356 SENSEKQRELEEKQNEieKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ--------EKELLEKE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 232 Y------IDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKK---YEDEINK-RTAAENDFVTLKKDVDNAYMI---KVE 298
Cdd:TIGR04523 428 IerlketIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQlkvLSRSINKiKQNLEQKQKELKSKEKELKKLneeKKE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 299 LQSKVDLLNQEIEFLKVLYD---AEISQIHQSVTDTNVILSMDNSrNLDLDSIIAEVKAQYEEIAQrSKEEAEALyHSKY 375
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEkleSEKKEKESKISDLEDELNKDDF-ELKKENLEKEIDEKNKEIEE-LKQTQKSL-KKKQ 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 376 EELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIadaeqrgehalKDARNKLNDLEEALQQAKED 455
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII-----------KNIKSKKNKLKQEVKQIKET 653
|
.
gi 47132620 456 L 456
Cdd:TIGR04523 654 I 654
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
389-488 |
7.63e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.37 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 389 LKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQrgehALKDARNKLNDLEEALQQAKedlARLLRDYQELMN 468
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKT----ELEDLEKEIKRLELEIEEVE---ARIKKYEEQLGN 84
|
90 100
....*....|....*....|....*
gi 47132620 469 VK-----LALDVEIATYRKLLEGEE 488
Cdd:COG1579 85 VRnnkeyEALQKEIESLKRRISDLE 109
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
345-485 |
7.98e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 345 LDSIIAEVKAQYEEI--AQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQD 422
Cdd:COG1196 244 LEAELEELEAELEELeaELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47132620 423 AIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLE 485
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
298-468 |
8.23e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 298 ELQSKVDLLNQEIEFLKVLYDA--EISQIHQSVTDTNvilsmdnSRNLDLDSI---IAEVKAQYEEI---------AQRS 363
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDAlqERREALQRLAEYS-------WDEIDVASAereIAELEAELERLdassddlaaLEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47132620 364 KEEAEALY---HSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAhvkkqcknvQDAIADAEQRGEHALKDA-- 438
Cdd:COG4913 694 LEELEAELeelEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR---------LELRALLEERFAAALGDAve 764
|
170 180 190
....*....|....*....|....*....|
gi 47132620 439 RNKLNDLEEALQQAKEDLARLLRDYQELMN 468
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMR 794
|
|
|