|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
66-487 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 857.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 66 LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLV 145
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 146 VNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFD 225
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 226 VFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQAQTGLGTAAL 385
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 386 IVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWP 465
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410 420
....*....|....*....|..
gi 51230625 466 VQGLIRHFRPLMESRIADFQQK 487
Cdd:PRK13596 402 IQGLIRHFRPEIEERIDQYTAN 423
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
71-481 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 664.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 71 RIFTNLYGRHDWRLKGALRRGDWYKTKEILDK-GVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNAD 149
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 150 EGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVM 229
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 230 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTKLFNI 309
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 310 SGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWdNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQAQTGLGTAALIVMD 389
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 390 KSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGL 469
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|..
gi 51230625 470 IRHFRPLMESRI 481
Cdd:TIGR01959 400 IKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
67-483 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 635.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 67 ADQDRI-FTNLYGRHDWRLKGALRRGDWYKTKEIL-DKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKpSDGRPKYL 144
Cdd:COG1894 1 KKQTRVlLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 145 VVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDF 224
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 225 DVFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGT 304
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 305 KLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGwDNLLCVIPGGSSTPLIPQHVCDTvLMDFDALIQAQTGLGTAA 384
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAEHLDT-PMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 385 LIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAW 464
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPN 397
|
410
....*....|....*....
gi 51230625 465 PVQGLIRHFRPLMESRIAD 483
Cdd:COG1894 398 PVLSTLKYFRDEFEAHIKD 416
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
111-280 |
5.16e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 183.48 E-value: 5.16e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 111 IKTSGLRGRGGAGFPTGMKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIR 190
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 191 GEFYNESSNLQVAINEAYAAGligknacgsgydFDVFVMRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 270
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 51230625 271 tTVANVETVA 280
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
395-440 |
3.44e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 77.95 E-value: 3.44e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 51230625 395 IRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEI 440
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
66-487 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 857.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 66 LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLV 145
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 146 VNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFD 225
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 226 VFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQAQTGLGTAAL 385
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 386 IVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWP 465
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410 420
....*....|....*....|..
gi 51230625 466 VQGLIRHFRPLMESRIADFQQK 487
Cdd:PRK13596 402 IQGLIRHFRPEIEERIDQYTAN 423
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
57-492 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 837.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 57 TPKKTKFGPLADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNK- 135
Cdd:PTZ00304 13 SLLVRVHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKv 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 136 PSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGK 215
Cdd:PTZ00304 93 KPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 216 NACGSGYDFDVFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAG 295
Cdd:PTZ00304 173 NACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFAS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 296 FGRERNSGTKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQ 375
Cdd:PTZ00304 253 FGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKE 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 376 AQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTI 455
Cdd:PTZ00304 333 VQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTI 412
|
410 420 430
....*....|....*....|....*....|....*..
gi 51230625 456 CALGDGAAWPVQGLIRHFRPLMESRIADFQQKQQARA 492
Cdd:PTZ00304 413 CALGDAAAWPVQGLIRHFRPEIEERIERYWEANPHWG 449
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
58-492 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 790.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 58 PKKTKFGPLADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPS 137
Cdd:PLN03132 25 PEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 138 DGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNA 217
Cdd:PLN03132 105 DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 218 CGSGYDFDVFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFG 297
Cdd:PLN03132 185 CGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFG 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 298 RERNSGTKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQAQ 377
Cdd:PLN03132 265 RKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 378 TGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICA 457
Cdd:PLN03132 345 SGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICA 424
|
410 420 430
....*....|....*....|....*....|....*
gi 51230625 458 LGDGAAWPVQGLIRHFRPLMESRIADFQQKQQARA 492
Cdd:PLN03132 425 LGDAAAWPVQGLIRHFRPELERRIKERAERELLAA 459
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
71-481 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 664.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 71 RIFTNLYGRHDWRLKGALRRGDWYKTKEILDK-GVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNAD 149
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 150 EGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVM 229
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 230 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTKLFNI 309
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 310 SGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWdNLLCVIPGGSSTPLIPQHVCDTVLMDFDALIQAQTGLGTAALIVMD 389
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 390 KSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGL 469
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|..
gi 51230625 470 IRHFRPLMESRI 481
Cdd:TIGR01959 400 IKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
67-483 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 635.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 67 ADQDRI-FTNLYGRHDWRLKGALRRGDWYKTKEIL-DKGVDWILNEIKTSGLRGRGGAGFPTGMKWSFMNKpSDGRPKYL 144
Cdd:COG1894 1 KKQTRVlLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 145 VVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDF 224
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 225 DVFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGT 304
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 305 KLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGwDNLLCVIPGGSSTPLIPQHVCDTvLMDFDALIQAQTGLGTAA 384
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAEHLDT-PMDYESLAAAGSMLGSGG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 385 LIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAW 464
Cdd:COG1894 318 MIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPN 397
|
410
....*....|....*....
gi 51230625 465 PVQGLIRHFRPLMESRIAD 483
Cdd:COG1894 398 PVLSTLKYFRDEFEAHIKD 416
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
105-482 |
3.56e-115 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 346.79 E-value: 3.56e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 105 DWILNEIKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARA 184
Cdd:PRK11278 49 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYR 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 185 AYIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIESIEGKQGKPRLKPPFPADV 264
Cdd:PRK11278 129 GYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATS 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 265 GVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRER--NSGTKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGW 342
Cdd:PRK11278 209 GVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKskDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 343 dNLLCVIPGGSSTP-LIPQHVcdTVLMDFDALIQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVD 421
Cdd:PRK11278 289 -KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLP 365
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 51230625 422 WMNKMMWRFVKGDARSAEIDMIWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPLMESRIA 482
Cdd:PRK11278 366 WSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIK 427
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
111-280 |
5.16e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 183.48 E-value: 5.16e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 111 IKTSGLRGRGGAGFPTGMKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAAYIYIR 190
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 191 GEFYNESSNLQVAINEAYAAGligknacgsgydFDVFVMRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 270
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 51230625 271 tTVANVETVA 280
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
396-480 |
9.47e-40 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 138.38 E-value: 9.47e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 396 RAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 475
Cdd:pfam10589 1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80
|
....*
gi 51230625 476 LMESR 480
Cdd:pfam10589 81 EFEAH 85
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
395-440 |
3.44e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 77.95 E-value: 3.44e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 51230625 395 IRAIARLIEFYKHESCGQCTPCREGVDWMNKMMWRFVKGDARSAEI 440
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
107-352 |
7.64e-13 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 70.06 E-value: 7.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 107 ILNEIKTSGLRGRGGAGFPTGMKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReIMRNDPHKLIEGCLVAGRAMGARAA 185
Cdd:TIGR01945 124 ILEKIRAAGIVGLGGATFPTHVK---LNPPPEKKIETLIINGAECEPYlTCDDR-LMRERAEEIIGGIRILLKILGVKKV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 186 YIYIrgefynESSNLqvainEAYAAgliGKNACGsGYDFDVFVMRgaGAYICGEETALIESIEGKQGKPRlkpPFPADVG 265
Cdd:TIGR01945 200 VIGI------EDNKP-----EAIAA---LKKALG-GYNIKVRVLP--TKYPQGGEKQLIYALTGREVPSG---GLPADIG 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 266 VfgcptTVANVETV-AVA-------PTIcRRGGTwfagfgrernsgtklfnISGH-VNNPCTVEEEMSIPLKELIErHAG 336
Cdd:TIGR01945 260 V-----VVQNVGTAfAIYeavvngkPLI-ERVVT-----------------VTGDaIRRPKNLWVLIGTPVSDILA-FCG 315
|
250
....*....|....*.
gi 51230625 337 GVRggwDNLLCVIPGG 352
Cdd:TIGR01945 316 GFR---EKPERLIMGG 328
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
107-340 |
5.40e-12 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 67.47 E-value: 5.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 107 ILNEIKTSGLRGRGGAGFPTGMKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReIMRNDPHKLIEGCLVAGRAMGARAA 185
Cdd:COG4656 124 IIERIREAGIVGLGGAGFPTHVK---LSPPPDKKIDTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKALGAKKV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 186 YIyirgefynessnlqvAIN----EAYAAgLigKNACGSGYDFDVFVMR---GAGAyicgeETALIESIEGKQ---GKpr 255
Cdd:COG4656 200 II---------------GIEdnkpEAIAA-L--RKALAGDDDIEVVVLPtkyPQGG-----EKQLIKALTGREvpsGG-- 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51230625 256 lkppFPADVGVFgcpttVANVETV-AVAPTICrrggtwfagFGR---ERnsgtkLFNISGH-VNNPCTVEEEMSIPLKEL 330
Cdd:COG4656 255 ----LPADVGVV-----VQNVGTAyAIYRAVR---------DGKpliER-----VVTVTGDaVKEPGNLLVRIGTPVSDL 311
|
250
....*....|
gi 51230625 331 IErHAGGVRG 340
Cdd:COG4656 312 LE-QAGGFKE 320
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
107-172 |
7.35e-07 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 51.87 E-value: 7.35e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51230625 107 ILNEIKTSGLRGRGGAGFPTGMKWSfmnkPSDGRPKYLVVNADEGEPG-TCKDReIMRNDPHKLIEG 172
Cdd:PRK05035 130 LIERIRQAGIAGLGGAGFPTAVKLQ----PGGDKIETLIINGAECEPYiTADDR-LMRERADEIIEG 191
|
|
| SLBB |
pfam10531 |
SLBB domain; |
309-343 |
1.45e-03 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 36.87 E-value: 1.45e-03
10 20 30
....*....|....*....|....*....|....*
gi 51230625 309 ISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWD 343
Cdd:pfam10531 4 VTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDADL 38
|
|
| |
