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Conserved domains on  [gi|53759105|ref|NP_001005265|]
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complement component receptor 1-like protein isoform 3 precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 39-290 3.28e-45

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 159.05  E-value: 3.28e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   39 PAPPL-FPYAKPINPTDESTFPVGTSLKYECRPGYIKRQF-SITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNtDI 116
Cdd:PHA02927  24 PSRPInMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMgPIYAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIG-GV 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  117 RFGSSITYTCNEGYRLIGSSSAMCII-SDQSVAWDAEAPICESIPCEIPPSIPNGDffSPNREDFHY-GMVVTYQCNTDa 194
Cdd:PHA02927 103 DFGSSITYSCNSGYQLIGESKSYCELgSTGSMVWNPEAPICESVKCQSPPSISNGR--HNGYEDFYTdGSVVTYSCNSG- 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  195 rgkklFNLVGEPSIHCTSidgqvGVWSGPPpqCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVY 274
Cdd:PHA02927 180 -----YSLIGNSGVLCSG-----GEWSDPP--TCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSST 247

                        250
                 ....*....|....*.
gi 53759105  275 CRSLNRWEPQLPSCFK 290
Cdd:PHA02927 248 CSPGNTWQPELPKCVR 263
PHA02639 super family cl31493
EEV host range protein; Provisional
 157-414 8.68e-16

EEV host range protein; Provisional


The actual alignment was detected with superfamily member PHA02639:

Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 77.78  E-value: 8.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  157 ESIPCEIPPSIPNGdFFSPNREDFHYGMVVTYQCNTDargkklFNLVGEPSIHCTSiDGQVGVWSGPPPQCIeLNKCT-P 235
Cdd:PHA02639  18 KSIYCDKPDDISNG-FITELMEKYEIGKLIEYTCNTD------YALIGDRFRTCIK-DKNNAIWSNKAPFCM-LKECNdP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  236 PHVENAVIVSKnkslfslRDMvefrcqdgfmmkgdssvycrslnrwepqlpscfkvkscgaflgelpnghvfvpqnLQLG 315
Cdd:PHA02639  89 PSIINGKIYNK-------REM-------------------------------------------------------YKVG 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  316 AKVTFVCN----TGYQLKGNSSSHCVLDgveSIWNSSVPVCEQVICKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYT 391
Cdd:PHA02639 107 DEIYYVCNehkgVQYSLVGNEKITCIQD---KSWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFD 183

                        250       260
                 ....*....|....*....|...
gi 53759105  392 LEGSSQSQCQSDASWDPPLPKCV 414
Cdd:PHA02639 184 LVGEKYSTCNINATWFPSIPTCV 206
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 39-290 3.28e-45

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 159.05  E-value: 3.28e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   39 PAPPL-FPYAKPINPTDESTFPVGTSLKYECRPGYIKRQF-SITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNtDI 116
Cdd:PHA02927  24 PSRPInMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMgPIYAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIG-GV 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  117 RFGSSITYTCNEGYRLIGSSSAMCII-SDQSVAWDAEAPICESIPCEIPPSIPNGDffSPNREDFHY-GMVVTYQCNTDa 194
Cdd:PHA02927 103 DFGSSITYSCNSGYQLIGESKSYCELgSTGSMVWNPEAPICESVKCQSPPSISNGR--HNGYEDFYTdGSVVTYSCNSG- 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  195 rgkklFNLVGEPSIHCTSidgqvGVWSGPPpqCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVY 274
Cdd:PHA02927 180 -----YSLIGNSGVLCSG-----GEWSDPP--TCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSST 247

                        250
                 ....*....|....*.
gi 53759105  275 CRSLNRWEPQLPSCFK 290
Cdd:PHA02927 248 CSPGNTWQPELPKCVR 263
PHA02639 PHA02639
EEV host range protein; Provisional
 157-414 8.68e-16

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 77.78  E-value: 8.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  157 ESIPCEIPPSIPNGdFFSPNREDFHYGMVVTYQCNTDargkklFNLVGEPSIHCTSiDGQVGVWSGPPPQCIeLNKCT-P 235
Cdd:PHA02639  18 KSIYCDKPDDISNG-FITELMEKYEIGKLIEYTCNTD------YALIGDRFRTCIK-DKNNAIWSNKAPFCM-LKECNdP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  236 PHVENAVIVSKnkslfslRDMvefrcqdgfmmkgdssvycrslnrwepqlpscfkvkscgaflgelpnghvfvpqnLQLG 315
Cdd:PHA02639  89 PSIINGKIYNK-------REM-------------------------------------------------------YKVG 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  316 AKVTFVCN----TGYQLKGNSSSHCVLDgveSIWNSSVPVCEQVICKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYT 391
Cdd:PHA02639 107 DEIYYVCNehkgVQYSLVGNEKITCIQD---KSWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFD 183

                        250       260
                 ....*....|....*....|...
gi 53759105  392 LEGSSQSQCQSDASWDPPLPKCV 414
Cdd:PHA02639 184 LVGEKYSTCNINATWFPSIPTCV 206
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 99-157 8.20e-11

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 57.47  E-value: 8.20e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  99 CETPLDPQNG-IVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQsvaWDAEAPICE 157
Cdd:cd00033   1 CPPPPVPENGtVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGG---WSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 99-156 1.07e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 54.07  E-value: 1.07e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 53759105     99 CETPLDPQNGIVHV-NTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQsvaWDAEAPIC 156
Cdd:smart00032   1 CPPPPDIENGTVTSsSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGT---WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 373-414 2.09e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 2.09e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 53759105 373 KKDYYYGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKCV 414
Cdd:cd00033  16 KGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 373-413 1.41e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.99  E-value: 1.41e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 53759105    373 KKDYYYGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKC 413
Cdd:smart00032  16 SGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
161-227 2.72e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 2.72e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53759105   161 CEIPPSIPNGDFfSPNREDFHYGMVVTYQCNtdaRGkklFNLVGEPSIHCTsIDGQvgvWSGPPPQC 227
Cdd:pfam00084   1 CPPPPDIPNGKV-SATKNEYNYGASVSYECD---PG---YRLVGSPTITCQ-EDGT---WSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
301-352 1.45e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 1.45e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 53759105   301 LPNGHVFVPQN-LQLGAKVTFVCNTGYQLKGNSSSHCVLDGvesIWNSSVPVC 352
Cdd:pfam00084   7 IPNGKVSATKNeYNYGASVSYECDPGYRLVGSPTITCQEDG---TWSPPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 39-290 3.28e-45

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 159.05  E-value: 3.28e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   39 PAPPL-FPYAKPINPTDESTFPVGTSLKYECRPGYIKRQF-SITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNtDI 116
Cdd:PHA02927  24 PSRPInMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMgPIYAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIG-GV 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  117 RFGSSITYTCNEGYRLIGSSSAMCII-SDQSVAWDAEAPICESIPCEIPPSIPNGDffSPNREDFHY-GMVVTYQCNTDa 194
Cdd:PHA02927 103 DFGSSITYSCNSGYQLIGESKSYCELgSTGSMVWNPEAPICESVKCQSPPSISNGR--HNGYEDFYTdGSVVTYSCNSG- 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  195 rgkklFNLVGEPSIHCTSidgqvGVWSGPPpqCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVY 274
Cdd:PHA02927 180 -----YSLIGNSGVLCSG-----GEWSDPP--TCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSST 247

                        250
                 ....*....|....*.
gi 53759105  275 CRSLNRWEPQLPSCFK 290
Cdd:PHA02927 248 CSPGNTWQPELPKCVR 263
PHA02639 PHA02639
EEV host range protein; Provisional
 99-292 8.43e-22

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 95.50  E-value: 8.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   99 CETPLDPQNG-IVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSpNR 177
Cdd:PHA02639  22 CDKPDDISNGfITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYN-KR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  178 EDFHYGMVVTYQCNtDARGKKlFNLVGEPSIHCTsidgQVGVWSGPPPQCIELNkCTPPHVENAVI--VSKNKSlFSLRD 255
Cdd:PHA02639 101 EMYKVGDEIYYVCN-EHKGVQ-YSLVGNEKITCI----QDKSWKPDPPICKMIN-CRFPALQNGYIngIPSNKK-FYYKT 172

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 53759105  256 MVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSCFKVK 292
Cdd:PHA02639 173 RVGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVRNK 209
PHA02639 PHA02639
EEV host range protein; Provisional
 157-414 8.68e-16

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 77.78  E-value: 8.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  157 ESIPCEIPPSIPNGdFFSPNREDFHYGMVVTYQCNTDargkklFNLVGEPSIHCTSiDGQVGVWSGPPPQCIeLNKCT-P 235
Cdd:PHA02639  18 KSIYCDKPDDISNG-FITELMEKYEIGKLIEYTCNTD------YALIGDRFRTCIK-DKNNAIWSNKAPFCM-LKECNdP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  236 PHVENAVIVSKnkslfslRDMvefrcqdgfmmkgdssvycrslnrwepqlpscfkvkscgaflgelpnghvfvpqnLQLG 315
Cdd:PHA02639  89 PSIINGKIYNK-------REM-------------------------------------------------------YKVG 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  316 AKVTFVCN----TGYQLKGNSSSHCVLDgveSIWNSSVPVCEQVICKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYT 391
Cdd:PHA02639 107 DEIYYVCNehkgVQYSLVGNEKITCIQD---KSWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFD 183

                        250       260
                 ....*....|....*....|...
gi 53759105  392 LEGSSQSQCQSDASWDPPLPKCV 414
Cdd:PHA02639 184 LVGEKYSTCNINATWFPSIPTCV 206
PHA02817 PHA02817
EEV Host range protein; Provisional
 303-414 2.07e-14

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 72.28  E-value: 2.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  303 NGHVFVPQNL-QLGAKVTFVCNTG-----YQLKGNSSSHCVLDGVesiWNSSVPVCEQVICKLPQDMSGFQKGLQMKKDY 376
Cdd:PHA02817  32 NGYIYNKKTEyNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGK---WNKEFPVCKIIRCRFPALQNGFVNGIPDSKKF 108

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 53759105  377 YYGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKCV 414
Cdd:PHA02817 109 YYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICS 146
PHA02831 PHA02831
EEV host range protein; Provisional
 314-417 4.40e-14

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 72.33  E-value: 4.40e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  314 LGAKVTFVCNTG----YQLKGNSSSHCVldgvESIWNSSVPVCEQVICKLPQDMSGFQKGLqmKKDYYYGDNVALECEDG 389
Cdd:PHA02831  98 FGDSVTYACKVNklekYSIVGNETVKCI----NKQWVPKYPVCKLIRCKYPALQNGFLNVF--EKKFYYGDIVNFKCKKG 171

                         90       100
                 ....*....|....*....|....*...
gi 53759105  390 YTLEGSSQSQCQSDASWDPPLPKCVSRS 417
Cdd:PHA02831 172 FILLGSSVSTCDINSIWYPGIPKCVKDK 199
PHA02817 PHA02817
EEV Host range protein; Provisional
 156-290 1.51e-13

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 69.97  E-value: 1.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  156 CESIPCEIPPSIPNGDFFSpNREDFHYGMVVTYQCNTDARGKKlFNLVGEPSIHCTSiDGQvgvWSGPPPQCiELNKCTP 235
Cdd:PHA02817  19 CDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNNTRGVR-YTLVGEKNIICEK-DGK---WNKEFPVC-KIIRCRF 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 53759105  236 PHVENAVI--VSKNKSlFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSCFK 290
Cdd:PHA02817  92 PALQNGFVngIPDSKK-FYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSR 147
PHA02639 PHA02639
EEV host range protein; Provisional
 58-228 7.40e-11

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 63.14  E-value: 7.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   58 FPVGTSLKYECRPGY--IKRQFSiTC---EVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDI-RFGSSITYTCNE--- 128
Cdd:PHA02639  40 YEIGKLIEYTCNTDYalIGDRFR-TCikdKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMyKVGDEIYYVCNEhkg 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  129 -GYRLIGSSSAMCIisdQSVAWDAEAPICESIPCEIpPSIPNGDFFS-PNREDFHYGMVVTYQCntdargKKLFNLVGEP 206
Cdd:PHA02639 119 vQYSLVGNEKITCI---QDKSWKPDPPICKMINCRF-PALQNGYINGiPSNKKFYYKTRVGFSC------KSGFDLVGEK 188

                        170       180
                 ....*....|....*....|..
gi 53759105  207 SIHCtSIDgqvGVWSGPPPQCI 228
Cdd:PHA02639 189 YSTC-NIN---ATWFPSIPTCV 206
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 99-157 8.20e-11

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 57.47  E-value: 8.20e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  99 CETPLDPQNG-IVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQsvaWDAEAPICE 157
Cdd:cd00033   1 CPPPPVPENGtVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGG---WSPPPPTCE 57
PHA02831 PHA02831
EEV host range protein; Provisional
 122-292 9.74e-11

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 62.32  E-value: 9.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  122 ITYTCNEGYrligsSSAMCIISDQSvaWDAEAPICESIPCEIPPSIPNGDFfsPNRED-FHYGMVVTYQCNTDARGKklF 200
Cdd:PHA02831  46 LEYKCNNNF-----DKVFVTCNNGS--WSTKNMCIGKRNCKDPVTILNGYI--KNKKDqYSFGDSVTYACKVNKLEK--Y 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  201 NLVGEPSIHCtsIDGQvgvWSGPPPQCiELNKCTPPHVENAVIVSKNKSlFSLRDMVEFRCQDGFMMKGDSSVYCRSLNR 280
Cdd:PHA02831 115 SIVGNETVKC--INKQ---WVPKYPVC-KLIRCKYPALQNGFLNVFEKK-FYYGDIVNFKCKKGFILLGSSVSTCDINSI 187

                        170
                 ....*....|..
gi 53759105  281 WEPQLPSCFKVK 292
Cdd:PHA02831 188 WYPGIPKCVKDK 199
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 161-228 3.59e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.55  E-value: 3.59e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 53759105 161 CEIPPSIPNGDFfSPNREDFHYGMVVTYQCNTDargkklFNLVGEPSIHCTSidgqVGVWSGPPPQCI 228
Cdd:cd00033   1 CPPPPVPENGTV-TGSKGSYSYGSTVTYSCNEG------YTLVGSSTITCTE----NGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 99-156 1.07e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 54.07  E-value: 1.07e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 53759105     99 CETPLDPQNGIVHV-NTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQsvaWDAEAPIC 156
Cdd:smart00032   1 CPPPPDIENGTVTSsSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGT---WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 373-414 2.09e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 2.09e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 53759105 373 KKDYYYGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKCV 414
Cdd:cd00033  16 KGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 161-227 1.09e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.37  E-value: 1.09e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53759105    161 CEIPPSIPNGDFFSPNrEDFHYGMVVTYQCNTDargkklFNLVGEPSIHCTSIdgqvGVWSGPPPQC 227
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPG------YTLIGSSTITCLEN----GTWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 373-413 1.41e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.99  E-value: 1.41e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 53759105    373 KKDYYYGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKC 413
Cdd:smart00032  16 SGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 234-288 1.68e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.92  E-value: 1.68e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 53759105 234 TPPHVENAVIVSKNKSlFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSC 288
Cdd:cd00033   3 PPPVPENGTVTGSKGS-YSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 234-288 1.95e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.60  E-value: 1.95e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 53759105    234 TPPHVENAVIVSKNKSlFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSC 288
Cdd:smart00032   3 PPPDIENGTVTSSSGT-YSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
161-227 2.72e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 2.72e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53759105   161 CEIPPSIPNGDFfSPNREDFHYGMVVTYQCNtdaRGkklFNLVGEPSIHCTsIDGQvgvWSGPPPQC 227
Cdd:pfam00084   1 CPPPPDIPNGKV-SATKNEYNYGASVSYECD---PG---YRLVGSPTITCQ-EDGT---WSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 38-95 3.31e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.15  E-value: 3.31e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 53759105  38 CPAPPLFPYAKPINPTDesTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCI 95
Cdd:cd00033   1 CPPPPVPENGTVTGSKG--SYSYGSTVTYSCNEGYtLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 294-353 1.32e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 48.23  E-value: 1.32e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 53759105 294 CGaFLGELPNGHVFVPQ-NLQLGAKVTFVCNTGYQLKGNSSSHCVLDGVesiWNSSVPVCE 353
Cdd:cd00033   1 CP-PPPVPENGTVTGSKgSYSYGSTVTYSCNEGYTLVGSSTITCTENGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
301-352 1.45e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 1.45e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 53759105   301 LPNGHVFVPQN-LQLGAKVTFVCNTGYQLKGNSSSHCVLDGvesIWNSSVPVC 352
Cdd:pfam00084   7 IPNGKVSATKNeYNYGASVSYECDPGYRLVGSPTITCQEDG---TWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
99-156 1.55e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.88  E-value: 1.55e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 53759105    99 CETPLDPQNGIVHVNTDI-RFGSSITYTCNEGYRLIGSSSAMCIISDQsvaWDAEAPIC 156
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEyNYGASVSYECDPGYRLVGSPTITCQEDGT---WSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 297-352 2.13e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.52  E-value: 2.13e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 53759105    297 FLGELPNGHVFVPQ-NLQLGAKVTFVCNTGYQLKGNSSSHCVLDGVesiWNSSVPVC 352
Cdd:smart00032   3 PPPDIENGTVTSSSgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT---WSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
357-413 2.59e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 2.59e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 53759105   357 CKLPQDMSGFqkGLQMKKDYY-YGDNVALECEDGYTLEGSSQSQCQSDASWDPPLPKC 413
Cdd:pfam00084   1 CPPPPDIPNG--KVSATKNEYnYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 94-247 3.41e-07

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 51.09  E-value: 3.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   94 CIRKQCETPLDPQNG-IVHVNTDIRFGSSITYTCNEG-----YRLIGSSSAMCiisDQSVAWDAEAPICESIPCEIpPSI 167
Cdd:PHA02817  19 CDLNKCCYPPSIKNGyIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIIC---EKDGKWNKEFPVCKIIRCRF-PAL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  168 PNGdFFS--PNREDFHYGMVVTYQCntdargKKLFNLVGEPsihcTSIDGQVGVWSGPPPQCIELNKCTpphveNAVIVS 245
Cdd:PHA02817  95 QNG-FVNgiPDSKKFYYESEVSFSC------KPGFVLIGTK----YSVCGINSSWIPKVPICSRDNITY-----NKIYIN 158


                 ..
gi 53759105  246 KN 247
Cdd:PHA02817 159 KV 160
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 308-418 4.08e-07

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 51.63  E-value: 4.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  308 VPQNLQLGAKVTFVCNTGYQLKGNSSSHCVLDGvesiWNSsVPVCEQVIcklpqDMSGFQKGLQMKKDYYYGDNVALECE 387
Cdd:PHA02954 143 VKEKYSFGEHITINCDVGYEVIGASYISCTANS----WNV-IPSCQQKC-----DIPSLSNGLISGSTFSIGGVIHLSCK 212

                         90       100       110
                 ....*....|....*....|....*....|.
gi 53759105  388 DGYTLEGSSQSQCqSDASWDPPLPKCVsRSN 418
Cdd:PHA02954 213 SGFTLTGSPSSTC-IDGKWNPVLPICV-RSN 241
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 38-94 5.90e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 46.37  E-value: 5.90e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 53759105     38 CPAPPLFPYAKPINPTDesTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVC 94
Cdd:smart00032   1 CPPPPDIENGTVTSSSG--TYSYGDTVTYSCDPGYtLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
38-94 1.54e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.18  E-value: 1.54e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 53759105    38 CPAPPLFPYAKPINPTDEstFPVGTSLKYECRPGYIKR-QFSITCEVNSVWTSPQDVC 94
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNE--YNYGASVSYECDPGYRLVgSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
233-288 4.52e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 4.52e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 53759105   233 CTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSC 288
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 120-290 4.39e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 42.38  E-value: 4.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  120 SSITYTCNEGYRLIgsssaMCIISDQSVAWDaEAPICESIPCEiPPSIPNGDFfSPNREDFHYGMVVTYQCNTDargkkl 199
Cdd:PHA02954  95 STITLICKDETKYF-----RCEEKNGNTSWN-DTVTCPNAECQ-PLQLEHGSC-QPVKEKYSFGEHITINCDVG------ 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105  200 FNLVGEPSIHCTSIDGQVgvwsgpPPQCIElnKCTPPHVENAVIvskNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSlN 279
Cdd:PHA02954 161 YEVIGASYISCTANSWNV------IPSCQQ--KCDIPSLSNGLI---SGSTFSIGGVIHLSCKSGFTLTGSPSSTCID-G 228

                        170
                 ....*....|.
gi 53759105  280 RWEPQLPSCFK 290
Cdd:PHA02954 229 KWNPVLPICVR 239
PHA02831 PHA02831
EEV host range protein; Provisional
 51-156 1.34e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 40.75  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   51 NPTDESTFpvGTSLKYECRPGYIKRQFSITCE----VNSVWTSPQDVCIRKQCETPLdPQNGIVHV-NTDIRFGSSITYT 125
Cdd:PHA02831  91 NKKDQYSF--GDSVTYACKVNKLEKYSIVGNEtvkcINKQWVPKYPVCKLIRCKYPA-LQNGFLNVfEKKFYYGDIVNFK 167

                         90       100       110
                 ....*....|....*....|....*....|.
gi 53759105  126 CNEGYRLIGSSSAMCiisDQSVAWDAEAPIC 156
Cdd:PHA02831 168 CKKGFILLGSSVSTC---DINSIWYPGIPKC 195
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 81-236 1.74e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 40.45  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53759105   81 CEVNSVWTSPQDV--CIRKQCEtPLDPQNGIVH-VNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVawdaeAPICE 157
Cdd:PHA02954 110 CEEKNGNTSWNDTvtCPNAECQ-PLQLEHGSCQpVKEKYSFGEHITINCDVGYEVIGASYISCTANSWNV-----IPSCQ 183

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 53759105  158 SiPCEIpPSIPNGDFfspNREDFHYGMVVTYQCntdargKKLFNLVGEPSIHCtsIDGQvgvWSGPPPQCIELNKCTPP 236
Cdd:PHA02954 184 Q-KCDI-PSLSNGLI---SGSTFSIGGVIHLSC------KSGFTLTGSPSSTC--IDGK---WNPVLPICVRSNEEFDP 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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