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zinc finger and SCAN domain-containing protein 26 isoform a [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
SCAN super family | cl42860 | leucine rich region; |
52-158 | 1.42e-50 | ||||
leucine rich region; The actual alignment was detected with superfamily member smart00431: Pssm-ID: 128708 [Multi-domain] Cd Length: 113 Bit Score: 167.87 E-value: 1.42e-50
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
290-469 | 9.76e-09 | ||||
FOG: Zn-finger [General function prediction only]; : Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 57.40 E-value: 9.76e-09
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Name | Accession | Description | Interval | E-value | ||||
SCAN | smart00431 | leucine rich region; |
52-158 | 1.42e-50 | ||||
leucine rich region; Pssm-ID: 128708 [Multi-domain] Cd Length: 113 Bit Score: 167.87 E-value: 1.42e-50
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SCAN | pfam02023 | SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found ... |
47-135 | 6.10e-43 | ||||
SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization. Pssm-ID: 460417 [Multi-domain] Cd Length: 89 Bit Score: 146.86 E-value: 6.10e-43
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SCAN | cd07936 | SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 ... |
52-130 | 6.15e-34 | ||||
SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several vertebrate proteins that contain C2H2 zinc finger motifs, many of which may be transcription factors playing roles in cell survival and differentiation. This protein-interaction domain is able to mediate homo- and hetero-oligomerization of SCAN-containing proteins. Some SCAN-containing proteins, including those of lower vertebrates, do not contain zinc finger motifs. It has been noted that the SCAN domain resembles a domain-swapped version of the C-terminal domain of the HIV capsid protein. This domain model features elements common to the three general groups of SCAN domains (SCAN-A1, SCAN-A2, and SCAN-B). The SCAND1 protein is truncated at the C-terminus with respect to this model, the SCAND2 protein appears to have a truncated central helix. Pssm-ID: 153421 Cd Length: 85 Bit Score: 122.75 E-value: 6.15e-34
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
290-469 | 9.76e-09 | ||||
FOG: Zn-finger [General function prediction only]; Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 57.40 E-value: 9.76e-09
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
297-322 | 2.37e-04 | ||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.12 E-value: 2.37e-04
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Name | Accession | Description | Interval | E-value | ||||
SCAN | smart00431 | leucine rich region; |
52-158 | 1.42e-50 | ||||
leucine rich region; Pssm-ID: 128708 [Multi-domain] Cd Length: 113 Bit Score: 167.87 E-value: 1.42e-50
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SCAN | pfam02023 | SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found ... |
47-135 | 6.10e-43 | ||||
SCAN domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization. Pssm-ID: 460417 [Multi-domain] Cd Length: 89 Bit Score: 146.86 E-value: 6.10e-43
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SCAN | cd07936 | SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 ... |
52-130 | 6.15e-34 | ||||
SCAN oligomerization domain; The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several vertebrate proteins that contain C2H2 zinc finger motifs, many of which may be transcription factors playing roles in cell survival and differentiation. This protein-interaction domain is able to mediate homo- and hetero-oligomerization of SCAN-containing proteins. Some SCAN-containing proteins, including those of lower vertebrates, do not contain zinc finger motifs. It has been noted that the SCAN domain resembles a domain-swapped version of the C-terminal domain of the HIV capsid protein. This domain model features elements common to the three general groups of SCAN domains (SCAN-A1, SCAN-A2, and SCAN-B). The SCAND1 protein is truncated at the C-terminus with respect to this model, the SCAND2 protein appears to have a truncated central helix. Pssm-ID: 153421 Cd Length: 85 Bit Score: 122.75 E-value: 6.15e-34
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
290-469 | 9.76e-09 | ||||
FOG: Zn-finger [General function prediction only]; Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 57.40 E-value: 9.76e-09
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
230-436 | 1.35e-08 | ||||
FOG: Zn-finger [General function prediction only]; Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 57.01 E-value: 1.35e-08
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
267-456 | 3.70e-06 | ||||
FOG: Zn-finger [General function prediction only]; Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 49.31 E-value: 3.70e-06
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COG5048 | COG5048 | FOG: Zn-finger [General function prediction only]; |
421-478 | 1.67e-04 | ||||
FOG: Zn-finger [General function prediction only]; Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 43.92 E-value: 1.67e-04
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
297-322 | 2.37e-04 | ||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.12 E-value: 2.37e-04
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
409-432 | 1.06e-03 | ||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 36.20 E-value: 1.06e-03
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
437-462 | 2.16e-03 | ||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 2.16e-03
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
283-305 | 2.33e-03 | ||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 35.35 E-value: 2.33e-03
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
326-350 | 2.63e-03 | ||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 2.63e-03
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
311-333 | 9.66e-03 | ||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 33.81 E-value: 9.66e-03
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Blast search parameters | ||||
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