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Conserved domains on  [gi|85701796|ref|NP_001028468|]
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protein sel-1 homolog 2 isoform 1 precursor [Mus musculus]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 2.57e-46

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 164.72  E-value: 2.57e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 85701796 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 6.47e-18

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.82  E-value: 6.47e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 85701796 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.71e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.71e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 85701796    588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 1.84e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.38  E-value: 1.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 85701796    551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 2.57e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 164.72  E-value: 2.57e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 85701796 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 6.47e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.82  E-value: 6.47e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 85701796 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 1.63e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.86  E-value: 1.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 85701796    407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.71e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.71e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 85701796    588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 4.77e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.77e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 85701796   371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 4.96e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.96e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 85701796   588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 1.84e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.38  E-value: 1.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 85701796    551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 2.57e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 164.72  E-value: 2.57e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 85701796 442 QPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
321-620 1.81e-38

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 142.76  E-value: 1.81e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 321 ALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQK 400
Cdd:COG0790  13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 401 AAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKgvcelghwa 480
Cdd:COG0790  93 AAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYR--------- 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 481 ekfltayfaykdgdidssliqyallaemgyevaqsnsafileskkakilgkeklypmalllwnRAAIQGNAFARVKIGDY 560
Cdd:COG0790 164 ---------------------------------------------------------------KAAEQGDADAQYNLGVL 180

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 561 HYYGYGTKKDYETAATHYSIAADKHHsAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:COG0790 181 YENGRGVPKDPAKALEWYRKAAEQGD-ADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
316-478 1.63e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 140.06  E-value: 1.63e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 316 QDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAaPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEAL 395
Cdd:COG0790  45 AGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGV-PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKAL 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 396 KYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCE 475
Cdd:COG0790 124 EWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAE 203


                ...
gi 85701796 476 LGH 478
Cdd:COG0790 204 QGD 206
TPR COG0790
TPR repeat [General function prediction only];
159-437 3.43e-31

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 121.96  E-value: 3.43e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 159 GMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGSMMSQMILGYRYLSGinvlqnceva 238
Cdd:COG0790  43 AAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEG---------- 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 239 lnhykkvadyiadkleksegipvekvrlterpenlssnseildwdiyqyykflaergdvqiqvslgqlhligrKGLDQDY 318
Cdd:COG0790 113 -------------------------------------------------------------------------LGVPQDY 119

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 319 SKALYYFLKAAKAGSANAMAFIGKMYFEGNaAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYF 398
Cdd:COG0790 120 AKALEWYEKAAEQGDADAQYNLGLLYLNGE-GVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWY 198

                       250       260       270
                ....*....|....*....|....*....|....*....
gi 85701796 399 QKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLA 437
Cdd:COG0790 199 RKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKA 237
TPR COG0790
TPR repeat [General function prediction only];
124-331 6.47e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.82  E-value: 6.47e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 124 QKQKTEAYTLFTRAANMGNLKAMEKMADAWLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701796 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 85701796 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 1.63e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.86  E-value: 1.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 85701796    407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.71e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.71e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 85701796    588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 4.77e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.77e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 85701796   371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 4.96e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.96e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 85701796   588 AQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 371-405 1.60e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.16  E-value: 1.60e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 85701796    371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 443-478 1.94e-04

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 39.08  E-value: 1.94e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 85701796    443 PLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGH 478
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 407-441 3.62e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 38.27  E-value: 3.62e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 85701796   407 PNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 1.84e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.38  E-value: 1.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 85701796    551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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