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Conserved domains on  [gi|1519313383|ref|NP_001035121|]
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uncharacterized protein C8orf74 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CLAMP super family cl20692
Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the ...
 102-137 2.97e-06

Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the C1a projection (the seventh projection of flagellar). Numerous studies have indicated that each of the seven projections associated with the central pair of microtubules in flagellar plays a distinct role in regulating eukaryotic ciliary/flagellar motility. The C1a projection is a complex of proteins including PF6, C1a-86, C1a-34, C1a-32, C1a-18, and calmodulin. C1a projection is involved in modulating flagellar beat frequency and this is mediated via the C1a-34, C1a-32, and C1a-18 sub-complex by modulating the activity of both the inner and outer dynein arms.


The actual alignment was detected with superfamily member pfam14769:

Pssm-ID: 464306  Cd Length: 99  Bit Score: 44.90  E-value: 2.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1519313383 102 FNTTHLLALCDYFHHTFIRHYKLYQYVLGQDQQVDL 137
Cdd:pfam14769  64 FSLDQVKAIIDYFLNTYFRHYKLYKYVFTPQVELDL 99
 
Name Accession Description Interval E-value
CLAMP pfam14769
Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the ...
 102-137 2.97e-06

Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the C1a projection (the seventh projection of flagellar). Numerous studies have indicated that each of the seven projections associated with the central pair of microtubules in flagellar plays a distinct role in regulating eukaryotic ciliary/flagellar motility. The C1a projection is a complex of proteins including PF6, C1a-86, C1a-34, C1a-32, C1a-18, and calmodulin. C1a projection is involved in modulating flagellar beat frequency and this is mediated via the C1a-34, C1a-32, and C1a-18 sub-complex by modulating the activity of both the inner and outer dynein arms.


Pssm-ID: 464306  Cd Length: 99  Bit Score: 44.90  E-value: 2.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1519313383 102 FNTTHLLALCDYFHHTFIRHYKLYQYVLGQDQQVDL 137
Cdd:pfam14769  64 FSLDQVKAIIDYFLNTYFRHYKLYKYVFTPQVELDL 99
 
Name Accession Description Interval E-value
CLAMP pfam14769
Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the ...
 102-137 2.97e-06

Flagellar C1a complex subunit C1a-32; This family represents one small subunit, C1a-32, of the C1a projection (the seventh projection of flagellar). Numerous studies have indicated that each of the seven projections associated with the central pair of microtubules in flagellar plays a distinct role in regulating eukaryotic ciliary/flagellar motility. The C1a projection is a complex of proteins including PF6, C1a-86, C1a-34, C1a-32, C1a-18, and calmodulin. C1a projection is involved in modulating flagellar beat frequency and this is mediated via the C1a-34, C1a-32, and C1a-18 sub-complex by modulating the activity of both the inner and outer dynein arms.


Pssm-ID: 464306  Cd Length: 99  Bit Score: 44.90  E-value: 2.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1519313383 102 FNTTHLLALCDYFHHTFIRHYKLYQYVLGQDQQVDL 137
Cdd:pfam14769  64 FSLDQVKAIIDYFLNTYFRHYKLYKYVFTPQVELDL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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