|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-1113 |
0e+00 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 1884.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 1 MESKAWESNNEDLLSSSGVTSNGGSSSSFFVSSIRGTIIENTSSAGTLTQVPFFPKYEVELDSPRKIIPSPGKEHFERVL 80
Cdd:pfam15921 1 MEPKPCESNNEDLLSSSGITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 161 KEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRI 240
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLS 320
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 321 DLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 401 KRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 481 VEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEK 560
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
Cdd:pfam15921 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 641 GSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 800
Cdd:pfam15921 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 801 RLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQ 880
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 881 STASFLSHHSTKANTLKEDPTRDLKQLLQELRSVINEEPAVSLSKTEEDGRT-SLGALEDRVRDCITESSLRSDMCHRSN 959
Cdd:pfam15921 881 STASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRApSLGALDDRVRDCIIESSLRSDICHSSS 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 960 NSLRdsTEGSKSSETLSREPVTLHAGDREDPSGCFTFTSAASPSVKNSASRSFNSSPKKSPVHSLLTSSVEGSIGSTSQY 1039
Cdd:pfam15921 961 NSLQ--TEGSKSSETCSREPVLLHAGELEDPSSCFTFPSTASPSVKNSASRSFHSSPKKSPVHSLLTSSAEGSIGSSSQY 1038
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112420968 1040 RSAKPIHSSDSVKDSQSPPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1113
Cdd:pfam15921 1039 RSAKTIHSPDSVKDSQSLPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1112
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
263-838 |
5.02e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 5.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 263 QQHQDRIEQLISEHEVEITGLTEKASSARsQANSIQSQMEIIQEQARnqnsmyMRQLSDLESTVSQLRSELREAkrmyED 342
Cdd:COG1196 185 EENLERLEDILGELERQLEPLERQAEKAE-RYRELKEELKELEAELL------LLKLRELEAELEELEAELEEL----EA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 343 KTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 422
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 423 NRNMEVQRLEALLKALKSECQgqmERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLT 502
Cdd:COG1196 334 ELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 503 TSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG 582
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 583 RTAGAMQVEKAQLE---------KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKV-KLVNAGSERLRAVKDIK 652
Cdd:COG1196 491 ARLLLLLEAEADYEgflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 653 QERDQLLNEVKTSRSELNN-----------------LSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTL 715
Cdd:COG1196 571 AGRATFLPLDKIRARAALAaalargaigaavdlvasDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 716 KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVL 795
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 112420968 796 RSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLK 838
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-814 |
1.93e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 1.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMAD----IRRRESQSQEDLrNQLQNTVH 152
Cdd:TIGR02168 199 ERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEeleeLTAELQELEEKL-EELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 153 ELEAAKCLKEDMLKDSNTQIEQLRKMmlshEGVLQEIRSILVDFEEASGKKICEHDSMSTLhfrslgsaISKILRELDTE 232
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEAQLEELESKLDE--------LAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 233 ISYLKGRIFPVEDQLEALKSESQNkIELLLQQHQDRIEQLISEheveITGLTEKASSARSQANSIQSQMEIIQEQARNQN 312
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSK----VAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 313 SMYMRQLSDLEST-VSQLRSELREAKRMYEDKTEELEKqlvlANSELTEARTERDQFSQESGNLDDQLQKL--------- 382
Cdd:TIGR02168 421 QEIEELLKKLEEAeLKELQAELEELEEELEELQEELER----LEEALEELREELEEAEQALDAAERELAQLqarldsler 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 383 ----LADLHKREKELSLEKEQNK----RLWDR---DTGNSITIDHLRRELDNrNMEVQRLEALLKALKSECQGQMERQM- 450
Cdd:TIGR02168 497 lqenLEGFSEGVKALLKNQSGLSgilgVLSELisvDEGYEAAIEAALGGRLQ-AVVVENLNAAKKAIAFLKQNELGRVTf 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 451 --------AAIQGKN----ESLEKVSSLTAQLESTKEMLRKVVEEL-------------TAKKMTLESSERTIS------ 499
Cdd:TIGR02168 576 lpldsikgTEIQGNDreilKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTldgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 500 -----------DLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILR 568
Cdd:TIGR02168 656 rpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE---LEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 569 QQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRMELKELkilkdkkDAKIRELEARVSDLELEKVklvnagsERLRAV 648
Cdd:TIGR02168 733 KDLARLEA--------------EVEQLEERIAQLSKELTEL-------EAEIEELEERLEEAEEELA-------EAEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 649 KDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamkv 728
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE--------- 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 729 amGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTN 808
Cdd:TIGR02168 856 --SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
....*.
gi 112420968 809 MEVALD 814
Cdd:TIGR02168 934 LEVRID 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
72-809 |
4.40e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 4.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 72 GKEHFERVLEEYSHQVKDLQRRLNESN---ELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ-- 146
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQle 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 147 -LQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKicehdsmsTLHFRSLGSAISKI 225
Cdd:TIGR02168 320 eLEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL--------EEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 226 LRELDTeisyLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQ 305
Cdd:TIGR02168 392 ELQIAS----LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 306 EQARNQNsmymRQLSDLESTVSQLRSELREAKRMYEDKTEELE--KQLVLANSELTEAR-TERDQFSQESG-------NL 375
Cdd:TIGR02168 468 EELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILgVLSELISVDEGyeaaieaAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 376 DDQLQKLL---ADLHKREKELSLEKEQNKRLW---DRDTGNSITIDHlrRELDNRNMEVQRLEALLKALKSECQGQME-- 447
Cdd:TIGR02168 544 GGRLQAVVvenLNAAKKAIAFLKQNELGRVTFlplDSIKGTEIQGND--REILKNIEGFLGVAKDLVKFDPKLRKALSyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 448 ----------RQMAAIQGKNESLEKVSSLTAQLESTKEML--------------RKVVEELTAKkmtLESSERTISDLTT 503
Cdd:TIGR02168 622 lggvlvvddlDNALELAKKLRPGYRIVTLDGDLVRPGGVItggsaktnssilerRREIEELEEK---IEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGR 583
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 584 TAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 664 TSRSELNNLSEEYEVLKRNFRNKSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEgsdghamkvamgmqKQITAKRGQI 743
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERA----SLEEALALLRSELEELSEELRELE--------------SKRSELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112420968 744 DALQSKIQFLEEAMTNA-NKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNM 809
Cdd:TIGR02168 918 EELREKLAQLELRLEGLeVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-682 |
1.84e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 81.65 E-value: 1.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 287 ASSARSQANSIQSQMEIIQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKT---EELEKQLVLANSELTEART 363
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEkeiEQLEQEEEKLKERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 364 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSItiDHLRRELDNRNMEVQRLEALLKALKSEcq 443
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRIEARLREIEQK-- 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 444 gqmerqmaaiqgknesLEKVSSLTAQLESTKEMLRKVVEELTAKKmtlESSERTISDLTTSLQEKERAIEATNAEITKLR 523
Cdd:TIGR02169 821 ----------------LNRLTLEKEYLEKEIQELQEQRIDLKEQI---KSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 524 SRvdlklqeLQHLKNEGDHLRNvqtecealklQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
Cdd:TIGR02169 882 SR-------LGDLKKERDELEA----------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 604 MELKELKILKDKKdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEvktsRSELNNLSEEYEVLKRN 682
Cdd:TIGR02169 945 EIPEEELSLEDVQ-AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-669 |
8.74e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 8.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 330 RSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG 409
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 410 NSITIDHLRRELDNRNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKK 488
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREaLDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 489 MTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGD----HLRNVQTECEALKLQMTEKDKVI 564
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RMELKELKILKDKKDAKIRELEARVSDLELEKVKL--VNAG 641
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLA 990
|
330 340
....*....|....*....|....*....
gi 112420968 642 S-ERLRAVKDIKQERDQLLNEVKTSRSEL 669
Cdd:TIGR02168 991 AiEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-962 |
2.42e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 2.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 251 KSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSA------RSQANSIQSQMEIIQEQARNQNsmyMRQLSDLES 324
Cdd:TIGR02168 174 RKETERKLERT-RENLDRLEDILNELERQLKSLERQAEKAerykelKAELRELELALLVLRLEELREE---LEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 325 TVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELS--LEKEQ 399
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEaqLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 400 NKRLWDRDTGNSIT--IDHLRRELDNRNMEVQRLEALLKALKS---ECQGQMERQMAAIQGKNESLE----KVSSLTAQL 470
Cdd:TIGR02168 330 SKLDELAEELAELEekLEELKEELESLEAELEELEAELEELESrleELEEQLETLRSKVAQLELQIAslnnEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 471 ESTKEMLRKVVEELTAKKMTLESSE-----RTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 546 vqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK-------AQLEKEINDRRME-----------LK 607
Cdd:TIGR02168 490 ---RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieAALGGRLQAVVVEnlnaakkaiafLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 608 ELKI-------LKDKKDAKIRELEARV-----------SDLELEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRSEL 669
Cdd:TIGR02168 567 QNELgrvtflpLDSIKGTEIQGNDREIlkniegflgvaKDLVKFDPKLRKALSYLLGGVL-VVDDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 670 NNLSEEYEVLKRNF----------------RNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
Cdd:TIGR02168 646 RIVTLDGDLVRPGGvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 734 KQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVAL 813
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 814 DKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQgpgytsnsslkpRLLQPASVTRSHsnvpssqstASFLSHHSTKA 893
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLE------------DLEEQIEELSED---------IESLAAEIEEL 864
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 894 NTLKEDPTRDLKQLLQELRSVinEEPAVSLSKTEEDGRTSLGALEDRVRDCITESSLRSDMCHRSNNSL 962
Cdd:TIGR02168 865 EELIEELESELEALLNERASL--EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
219-840 |
3.98e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 3.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 219 GSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEkassarSQANSIQ 298
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE-----LEKRLEEIEQLLEELNKKIKDLGE------EEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 299 SQMEIIQ---EQARNQNSMYMRQLSDLESTVSQLRSELREakrmYEDKTEELEKqlvlansELTEARTERDQFSQESGNL 375
Cdd:TIGR02169 294 EKIGELEaeiASLERSIAEKERELEDAEERLAKLEAEIDK----LLAEIEELER-------EIEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 376 DDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQG 455
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLK------ 529
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLkasiqg 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 530 ----LQELQHLKNE---------GDHLRNVQTECEAL----------------------KLQMTEKDK-------VIEIL 567
Cdd:TIGR02169 523 vhgtVAQLGSVGERyataievaaGNRLNNVVVEDDAVakeaiellkrrkagratflplnKMRDERRDLsilsedgVIGFA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 568 ------RQQIEN--------------------------MTQLVGQHGRTAGAM----------QVEKAQLEKEINDRRME 605
Cdd:TIGR02169 603 vdlvefDPKYEPafkyvfgdtlvvedieaarrlmgkyrMVTLEGELFEKSGAMtggsraprggILFSRSEPAELQRLRER 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 606 LKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKR---N 682
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 683 FRNKSEEMEMTTNKLKMQLKS-----AQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLE-------EEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 758 TNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRL 837
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
...
gi 112420968 838 KLQ 840
Cdd:TIGR02169 916 RKR 918
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
224-810 |
1.85e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.06 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQqhqdrIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR04523 131 KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE-----LENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 304 IQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKTEEL---EKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
Cdd:TIGR04523 206 LKKKIQKNKSL-ESQISELKKQNNQLKDNIEKKQQEINEKTTEIsntQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 381 KLLADLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDNRNMEVQRLEALLKALKSEcqgqmerqmaaiqg 455
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKSELKnqekkLEEIQNQISQNNKIISQLNEQISQLKKE-------------- 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQH 535
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 536 LKNE----GDHLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlvgqhgrtagamqvekaQLEKEINDRRMELKELKI 611
Cdd:TIGR04523 431 LKETiiknNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK---------------------VLSRSINKIKQNLEQKQK 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 612 LKDKKDAKIRELEARVSDLELEkvklvnagserlraVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFrnKSEEME 691
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEK--------------VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL--NKDDFE 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 692 MTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKekhflkeEK 771
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK-------EN 626
|
570 580 590
....*....|....*....|....*....|....*....
gi 112420968 772 SKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:TIGR04523 627 EKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
109-717 |
2.74e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.31 E-value: 2.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 109 RQSVID--LQTKLQEMQMER--DAMADIRRRESQSQEDLRnQLQNTVHELEAAKCLK-----EDMLKDSNTQIEQLRKMM 179
Cdd:PRK02224 151 RQDMIDdlLQLGKLEEYRERasDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHErlnglESELAELDEEIERYEEQR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 180 LSHEGVLQEIRSILVDFEEasgkkicEHDSMSTLH--FRSLGSAISKILRELDT---EISYLKGRIFPVEDQLEALKSE- 253
Cdd:PRK02224 230 EQARETRDEADEVLEEHEE-------RREELETLEaeIEDLRETIAETEREREElaeEVRDLRERLEELEEERDDLLAEa 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 254 -----SQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQArnqnsmymrqlSDLEST 325
Cdd:PRK02224 303 glddaDAEAVEARREELEDRDEELrdrLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-----------AELESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 326 VSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDqfsqESGNLDDQLQKLLADLHKREKELSLE-------KE 398
Cdd:PRK02224 372 LEEAREAVEDR----REEIEELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATlrtarerVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 399 QNKRLWDR----DTGNSITIDHLRRELDNRNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTK 474
Cdd:PRK02224 444 EAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLE 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 475 EMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQ 547
Cdd:PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIR 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 548 TECEALklqmTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMElkELKILKDKKDAKIRELEARV 627
Cdd:PRK02224 596 TLLAAI----ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE--EAREDKERAEEYLEQVEEKL 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 628 SDLElekvklvnagserlravkdikQERDQLLNEVKTSRSELNNLSEeyevlkrnFRNKSEEMEMTTNKLKmQLKSAQSE 707
Cdd:PRK02224 670 DELR---------------------EERDDLQAEIGAVENELEELEE--------LRERREALENRVEALE-ALYDEAEE 719
|
650
....*....|
gi 112420968 708 LEQTRNTLKS 717
Cdd:PRK02224 720 LESMYGDLRA 729
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
335-841 |
1.17e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.90 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 335 EAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHkrEKELSLEKEQNKRLWDRDTGNSIti 414
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDH--EKIQHLEEEYKKEINDKEKQVSL-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 415 dhLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
Cdd:pfam05483 245 --LLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIA 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 495 ERTISDLT----TSLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGDHLR---------------------N 545
Cdd:pfam05483 323 TKTICQLTeekeAQMEELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKNEDQLKiitmelqkksseleemtkfknN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 546 VQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEINDRRMEL--------------KELKI 611
Cdd:pfam05483 403 KEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR----EKEIHDLEIQLtaiktseehylkevEDLKT 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 612 LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK-------DIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFR 684
Cdd:pfam05483 479 ELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKkhqediiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFI 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 685 NKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
Cdd:pfam05483 559 QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK-------CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 765 HFLKEEKSKLSQELSTVATEKNKMAG----ELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
Cdd:pfam05483 632 NAYEIKVNKLELELASAKQKFEEIIDnyqkEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEK 711
|
.
gi 112420968 841 H 841
Cdd:pfam05483 712 H 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
445-800 |
1.64e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 445 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLR 523
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 524 SRVDLKLQELQHLKNE-----GDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMtqlvgqhgrtagamQVEKAQLEKE 598
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKikdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA--------------EERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 599 IndrrmelkelkilkDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEV 678
Cdd:TIGR02169 331 I--------------DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 679 LKRnfrnKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamKVAmGMQKQITAKRGQIDALQSKIQFLEEAMT 758
Cdd:TIGR02169 397 LKR----EINELKRELDRLQEELQRLSEELADLNAAIAGIEA------KIN-ELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 112420968 759 NANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 800
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
243-842 |
3.41e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 243 VEDQLEALKSE---SQNKIELLLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNS 313
Cdd:TIGR04523 38 LEKKLKTIKNElknKEKELKNLDKNLNKDEEKInnsnnkIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 314 mymrQLSDLESTVSQLRSELREAKRMYEDKTEELEKQlvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
Cdd:TIGR04523 118 ----QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 394 SLEKEQNKRLwdrdtgnsitiDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEST 473
Cdd:TIGR04523 190 DKIKNKLLKL-----------ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 474 KEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEitklrsrvdlKLQELqhLKNEGDHLRNVQTECEAL 553
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ----------KEQDW--NKELKSELKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 554 KLQMTEKDKVIEILRQQIENMTqlvgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLK-------KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 634 kvklvnagserlraVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKrNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRN 713
Cdd:TIGR04523 400 --------------IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK-ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 714 TLKsmegsdghamkvamgmqKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELE 793
Cdd:TIGR04523 465 SLE-----------------TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE 527
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 112420968 794 VLRSQERRLKEKVTNMEVAL--DKASLQFAECQDIIQRQEQESVRLKLQHT 842
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQK 578
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-813 |
4.26e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 4.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 77 ERVLEEYSHQVKDLQRRLNES----NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIeqllEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 153 ELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkkicehdsmstlhfrslgsaISKILRELDTE 232
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE-----------------------VDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 233 ISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDrieqlISEHEVEITGLTEKASSARSQANSIQSQMEiIQEQARNQN 312
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEE-----LADLNAAIAGIEAKINELEEEKEDKALEIK-KQEWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 313 SmymRQLSDLESTVSQLRSELREakrmYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ---KLLADLHKR 389
Cdd:TIGR02169 461 A---ADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 390 EKE--LSLEKEQNKRL----WDRDTGNSITIDHLRRELDNRNM-----EVQRLEALLKALKS-----------ECQGQME 447
Cdd:TIGR02169 534 GERyaTAIEVAAGNRLnnvvVEDDAVAKEAIELLKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdlvEFDPKYE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 448 RQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAkkMTLES-SERTISDLTTSLQEKERAIeatNAEITKLRS 524
Cdd:TIGR02169 614 PAFKYVFGDTLVVEDIEAARRLMGKYRmvTLEGELFEKSGA--MTGGSrAPRGGILFSRSEPAELQRL---RERLEGLKR 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 525 RVDLKLQELQHLKNEGDHLRNVQTECEAlklQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRM 604
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 605 ELKELKILKDKKDAKIRELEARVSDLEL-EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNF 683
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 684 RNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-------LKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 112420968 764 KHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSqERRLKEKVTNMEVAL 813
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEI 967
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
202-676 |
1.42e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 202 KKICEHDSMST--LHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQ-------- 271
Cdd:TIGR04523 208 KKIQKNKSLESqiSELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQnnkkikel 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 272 --LISEHEVEITGLTEKASS-----ARSQANSIQSQMEIIQEQARNQN---SMYMRQLSDLESTVSQLRSELREAKRMYE 341
Cdd:TIGR04523 287 ekQLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 342 DKTEELEK----------QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN-------KRLW 404
Cdd:TIGR04523 367 EKQNEIEKlkkenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIiknnseiKDLT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 405 DRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSEcqgqMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEL 484
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN----LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 485 TAKKMTLESserTISDLTTSLQEKERAIEATNAEITK--LRSRVDLKLQELQHLKNEGDHLRNVQTEceaLKLQMTEKDK 562
Cdd:TIGR04523 523 KEKIEKLES---EKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQKSLKKKQEE---KQELIDQKEK 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 563 VIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGS 642
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKI--------------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
490 500 510
....*....|....*....|....*....|....
gi 112420968 643 ERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEY 676
Cdd:TIGR04523 663 EIIKKIKESKTKIDDIIELMKDWLKELSLHYKKY 696
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
221-810 |
1.55e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 221 AISKILRELDTEISYLKGRIfpVEDQLEALKSESQ------NKIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQA 294
Cdd:COG1196 217 ELKEELKELEAELLLLKLRE--LEAELEELEAELEeleaelEELEAELAELEAELEELRLELEE----LELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 295 NSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERdqfsqesgn 374
Cdd:COG1196 291 YELLAELARLEQDIARLE----ERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEEL--------- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 375 ldDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitidhLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQ 454
Cdd:COG1196 354 --EEAEAELAEAEEALLEAEAELAEAEEELEE----------LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 455 GKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQ--E 532
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 533 LQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA-QLEKEINDRRMELKELKI 611
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAiEYLKAAKAGRATFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 612 LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEME 691
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 692 MTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEK 771
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....*....
gi 112420968 772 SKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
467-690 |
6.87e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 6.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 546
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 547 QTECEAL------KLQMTEKDKVIEILRQQiENMTQLVgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKI 620
Cdd:COG4942 99 LEAQKEElaellrALYRLGRQPPLALLLSP-EDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEM 690
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
549-838 |
3.53e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 549 ECEALKLQMTEKDKVIEILRQQIENmtqlvgqhgrtagaMQVEKAQLEK--EINDRRMELKELKILKDKK--DAKIRELE 624
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLER--------------LRREREKAERyqALLKEKREYEGYELLKEKEalERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 625 ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVK--------TSRSELNNLSEEYEVLKRNFRNKSEEMEmttnK 696
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeeqlRVKEKIGELEAEIASLERSIAEKERELE----D 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQ 776
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112420968 777 ELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLK 838
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
285-719 |
3.85e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 285 EKASSARSQANSIQSQMEIIQEQARNQ-----NSMYMRQLSDLESTVSQLRSELREakrmYEDKTEELEKQLVLANSELT 359
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQieekeEKDLHERLNGLESELAELDEEIER----YEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 360 EARTERDQFSQESGNLDDQLQKLLADLHKRE---KELSLEKEQNKRLWDRdtgnsitIDHLRRELDNRNMEVQRLEALLK 436
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREREelaEEVRDLRERLEELEEE-------RDDLLAEAGLDDADAEAVEARRE 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 437 AL---KSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTISDlttslqeKERAIE 513
Cdd:PRK02224 318 ELedrDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE---LEEAREAVED-------RREEIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 514 ATNAEITKLRSRVDLKLQELQHLKnegDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA 593
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAE---DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 594 QLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLE--LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNN 671
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 112420968 672 LSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSME 719
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
414-835 |
6.75e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 6.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 414 IDHLRRELDNRNMEVQRlEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
Cdd:PRK03918 171 IKEIKRRIERLEKFIKR-TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 494 SERTISDLTTSLQEKERAIEATNAEITKLRSRVdlklQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIEN 573
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKV----KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 574 MTQLVgqhgrtagamqvekaqleKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653
Cdd:PRK03918 326 IEERI------------------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 654 ERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQ-------------------LKSAQSELEQTRNT 714
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrelteehrkelLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 715 LKSMEGSDGHAMKVAMGMQKQItAKRGQIDALQSKIQFLEEAmtnANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEV 794
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVL-KKESELIKLKELAEQLKEL---EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 112420968 795 LRSQERRLKE---KVTNMEVALDKASLQFAECQDIIQRQEQESV 835
Cdd:PRK03918 544 LKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESV 587
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
584-817 |
7.32e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 584 TAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvNAGSERLRAVKDIKQERDQLLNEVK 663
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-------RRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 664 TSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQI 743
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112420968 744 DALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKAS 817
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
317-832 |
8.39e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.45 E-value: 8.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 317 RQLSDLESTVSQLRSELREAKRMY---EDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL--LADLHKREK 391
Cdd:PRK01156 204 KQIADDEKSHSITLKEIERLSIEYnnaMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNnyYKELEERHM 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 392 ELSLEKEQNKRLWDRDTGNSIT-IDHLRRELDNRNMEVQRLEALLKALKsecqgQMERQMAAIQGKNESLEKVSSLTAQL 470
Cdd:PRK01156 284 KIINDPVYKNRNYINDYFKYKNdIENKKQILSNIDAEINKYHAIIKKLS-----VLQKDYNDYIKKKSRYDDLNNQILEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 471 ESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegDHLRNVQTEC 550
Cdd:PRK01156 359 EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDIS------SKVSSLNQRI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 551 EALKLQMTEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKD----- 614
Cdd:PRK01156 433 RALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEylese 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 615 ---KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLK-RNFRNKSEEM 690
Cdd:PRK01156 513 einKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDiETNRSRSNEI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 691 EMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTnankEKHFLKEE 770
Cdd:PRK01156 593 KKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA----EIDSIIPD 668
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112420968 771 KSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:PRK01156 669 LKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
108-695 |
9.64e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 9.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEaakclkedmlkdsntqieqlrkmmlshegvlq 187
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG-------------------------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 188 eirsilvdfeeasgkkicehdsmstlhfrslgsaiskiLRELDTEIsylkgrifpVEDQLEALKSESQNKIELLLQQHQD 267
Cdd:PRK02224 304 --------------------------------------LDDADAEA---------VEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 268 rieqlISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKTEEL 347
Cdd:PRK02224 337 -----AQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE----AVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 348 EKqlvlANSELTEARTERDqfsqesgNLDDQLQKLLADLHKREKELslekEQNKRLWDR----DTGNSITIDHLRRELDN 423
Cdd:PRK02224 408 GN----AEDFLEELREERD-------ELREREAELEATLRTARERV----EEAEALLEAgkcpECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 424 RNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTT 503
Cdd:PRK02224 473 DRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 504 SLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQTECEALklqmTEKDKVIEILRQQIENMTQ 576
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIRTLLAAI----ADAEDEIERLREKREALAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 577 LVGQHGRTAGAMQVEKAQLEKEINDRRME-----LKELKILKDKKDAKIRELEARVSDLeLEKVKLVNAGSERLRAVKDi 651
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEFDEARIEearedKERAEEYLEQVEEKLDELREERDDL-QAEIGAVENELEELEELRE- 698
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 112420968 652 kqERDQLLNEV---KTSRSELNNLSEEYEVLKRNFRNKS-EEMEMTTN 695
Cdd:PRK02224 699 --RREALENRVealEALYDEAEELESMYGDLRAELRQRNvETLERMLN 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-544 |
1.60e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 266 QDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYE---- 341
Cdd:COG4913 609 RAKLAAL----EAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELErlda 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 342 --DKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLaDLHKREKELSLEKEQNKRLWDRDtgnsiTIDHLRR 419
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-EELDELQDRLEAAEDLARLELRA-----LLEERFA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 420 ELDNRNME---VQRLEALLKALKSE---CQGQMERQMAAIqgKNESLEKVSSLTAQLESTKE---MLRKVVE----ELTA 486
Cdd:COG4913 757 AALGDAVErelRENLEERIDALRARlnrAEEELERAMRAF--NREWPAETADLDADLESLPEylaLLDRLEEdglpEYEE 834
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112420968 487 K--KMTLESSERTISDLTTSLQEKERAIeatnaeitklRSRVDLKLQELQHLK-NEGDHLR 544
Cdd:COG4913 835 RfkELLNENSIEFVADLLSKLRRAIREI----------KERIDPLNDSLKRIPfGPGRYLR 885
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
80-488 |
2.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 80 LEEYSHQVKDLQRRLN----ESNELhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE 155
Cdd:TIGR02169 676 LQRLRERLEGLKRELSslqsELRRI-ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 156 AAKclkeDMLKDSNTQIEQLrkmmlshEGVLQEIRSILVDFEeasgkkicEHDSMSTLhfrslgSAISKILRELDTEISY 235
Cdd:TIGR02169 755 NVK----SELKELEARIEEL-------EEDLHKLEEALNDLE--------ARLSHSRI------PEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 236 LKGRIFPVEDQLealksesqNKIELLLQQHQDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQ---ARNQN 312
Cdd:TIGR02169 810 IEARLREIEQKL--------NRLTLEKEYLEKEIQEL----QEQRIDLKEQIKSIEKEIENLNGKKEELEEEleeLEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLAnSELTEARterdqfSQESGNLDDQLQKLLADLHKREKE 392
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL-SELKAKL------EALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 393 LSLEKEQnkrlwdrdtgnsitidhlrreldnrnMEVQRLEALLKALKsecqgqmERQMAAIQGKNESLEKVSSLTAQ--- 469
Cdd:TIGR02169 951 LSLEDVQ--------------------------AELQRVEEEIRALE-------PVNMLAIQEYEEVLKRLDELKEKrak 997
|
410
....*....|....*....
gi 112420968 470 LESTKEMLRKVVEELTAKK 488
Cdd:TIGR02169 998 LEEERKAILERIEEYEKKK 1016
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
226-606 |
2.62e-07 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 54.30 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL--LLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQMEI 303
Cdd:pfam19220 19 LEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELeaLLAQERAAYGKLRRELA----GLTRRLSAAEGELEELVARLAK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 304 IQEQARNQnsmymrqlsdlESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:pfam19220 95 LEAALREA-----------EAAKEELRIELRDK----TAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 384 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDN----RNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNES 459
Cdd:pfam19220 160 GELATARERLALLEQENRRLQALSEEQAAELAELTRRLAEletqLDATRARLRALEGQLAAE-QAERERAEAQLEEAVEA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 460 LE--------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRvdlkLQ 531
Cdd:pfam19220 239 HRaeraslrmKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQ----FQ 314
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112420968 532 ELQHLKNEGDHlrnvqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRtagAMQVEKAQLEKEINDRRMEL 606
Cdd:pfam19220 315 EMQRARAELEE------RAEMLTKALAAKDAALERAEERIASLSDRIAELTK---RFEVERAALEQANRRLKEEL 380
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
145-719 |
2.74e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 145 NQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKicehdsmstlhfrslgSAISK 224
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL----------------EKLEK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 225 ILRELDTeisyLKGRIFPVEDQLEALKSESQnKIELLLQQHQDRIEQLISEHEV------EITGLTEKA------SSARS 292
Cdd:PRK03918 229 EVKELEE----LKEEIEELEKELESLEGSKR-KLEEKIRELEERIEELKKEIEEleekvkELKELKEKAeeyiklSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 293 QANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRsELREAKRMYEDKTEELEKQLvlanSELTEARterdqfsqes 372
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERH----ELYEEAK---------- 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 373 gnlddQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidhlrrELDNRNMEVQRLEALLKALKSECQGQMERQMAA 452
Cdd:PRK03918 369 -----AKKEELERLKKRLTGLTPEKLEKELE----------------ELEKAKEEIEEEISKITARIGELKKEIKELKKA 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 453 IQGKNESLEKVSSLTAQL--ESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEaTNAEITKLRSRVD-LK 529
Cdd:PRK03918 428 IEELKKAKGKCPVCGRELteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK-KESELIKLKELAEqLK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 530 LQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGqhgrtagamqvEKAQLEKEINDRRMELKEL 609
Cdd:PRK03918 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK-----------KLAELEKKLDELEEELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 610 -KILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSERLRAVKDIKQERDQL----------LNEVKTSRSELNNLSEE 675
Cdd:PRK03918 576 lKELEELGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELdkafeelaetEKRLEELRKELEELEKK 655
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 112420968 676 YEVLK-RNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSME 719
Cdd:PRK03918 656 YSEEEyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-545 |
2.80e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 342 DKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 422 DNRNMEV-QRLEALLKA---------LKSECQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:COG4942 100 EAQKEELaELLRALYRLgrqpplallLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 112420968 492 essERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:COG4942 177 ---EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
326-833 |
2.85e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 326 VSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLdDQLQKLLADLHKREKELSLEkeqnkrlwd 405
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEEL-EELEEELEELEAELEELREE--------- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 406 rdtgnsitIDHLRRELDNRNMEVQRLEalLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELT 485
Cdd:COG4717 118 --------LEKLEKLLQLLPLYQELEA--LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 486 AKKmtlessERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT--ECEALKLQMTEKDKV 563
Cdd:COG4717 188 LAT------EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 564 IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE 643
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 644 RLRAVKDIKQERDQLlnEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDG 723
Cdd:COG4717 342 LLDRIEELQELLREA--EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELE 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 724 HAmkvamgmqkqitAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEknkmaGELEVLRSQERRLK 803
Cdd:COG4717 420 EL------------LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-----GELAELLQELEELK 482
|
490 500 510
....*....|....*....|....*....|..
gi 112420968 804 EKVTnmEVALDKASLQFAEC--QDIIQRQEQE 833
Cdd:COG4717 483 AELR--ELAEEWAALKLALEllEEAREEYREE 512
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-522 |
3.17e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 93 RLNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAmadirrresqsqedLRNQLQNTVHELEAAKCLKEDMLKDSNTQI 172
Cdd:TIGR02168 672 ILERRREIEE-----LEEKIEELEEKIAELEKALAE--------------LRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 173 EQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLhfrslgsaiSKILRELDTEISYLKGRIFPVEDQLEALKS 252
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------EEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 253 EsqnkielllqqhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSmymrQLSDLESTVSQLRSE 332
Cdd:TIGR02168 804 A------------LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEEL 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 333 LREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlekeqnkrlwdrdtgnsi 412
Cdd:TIGR02168 868 IEEL----ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA------------------ 925
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 413 tidHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:TIGR02168 926 ---QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKELGPVNLAAIEEYEELKERY 1002
|
410 420 430
....*....|....*....|....*....|.
gi 112420968 492 ESSERTISDLTTSLQEKERAIEATNAEITKL 522
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
262-810 |
3.88e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.41 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQARN--QNSMYMRQLSDLESTVSQLRSELREAKRm 339
Cdd:pfam01576 438 LQSELESVSSLLNEAEGKNIKLSKDVSSLESQ---LQDTQELLQEETRQklNLSTRLRQLEDERNSLQEQLEEEEEAKR- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 340 yedkteELEKQLVLANSELTEARTERDQFSQESGNLDD---QLQKLLADLHKREKELSLEKE----QNKRLWDRDTGNSI 412
Cdd:pfam01576 514 ------NVERQLSTLQAQLSDMKKKLEEDAGTLEALEEgkkRLQRELEALTQQLEEKAAAYDklekTKNRLQQELDDLLV 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 413 TIDHLRRELDNRNMEVQRLEALLKALKS-ECQGQMERQMAAIQGKNE---------SLEKVSSLTAQLESTKEMLRKVVE 482
Cdd:pfam01576 588 DLDHQRQLVSNLEKKQKKFDQMLAEEKAiSARYAEERDRAEAEAREKetralslarALEEALEAKEELERTNKQLRAEME 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 483 ELTAKK-------MTLESSERT----ISDLTTSLQEKERAIEATnaEITKLRSRVDLKL------QELQHLKNEGD---- 541
Cdd:pfam01576 668 DLVSSKddvgknvHELERSKRAleqqVEEMKTQLEELEDELQAT--EDAKLRLEVNMQAlkaqfeRDLQARDEQGEekrr 745
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 542 ----HLRNVQTECEALKLQMTE---KDKVIEILRQQIENMTQLVGQhGRTAGAMQVEKAQleKEINDRRMELKELKILKD 614
Cdd:pfam01576 746 qlvkQVRELEAELEDERKQRAQavaAKKKLELDLKELEAQIDAANK-GREEAVKQLKKLQ--AQMKDLQRELEEARASRD 822
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 615 KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTT 694
Cdd:pfam01576 823 EILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQ 902
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 695 N----------KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgmqkqitakrgQIDALQSKIQFLEEAMTNanKEK 764
Cdd:pfam01576 903 SntellndrlrKSTLQVEQLTTELAAERSTSQKSESARQQLER--------------QNKELKAKLQEMEGTVKS--KFK 966
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 112420968 765 HFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:pfam01576 967 SSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVE 1012
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
297-519 |
4.66e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 297 IQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR------------MYEDKTEELEKQLVLANSELTEARTE 364
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlseeakLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 365 RDQFSQESGNLDDQLQKLLAD-----LHKREKELSLEKEQnkrlwdrdtgnsitidhLRRELDNRNMEVQRLEALLKALK 439
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpviqqLRAQLAELEAELAE-----------------LSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 440 SECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVE---ELTAKKMTLESSERTISDLTTSLQEK--ERAIE 513
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQaREASLQAQLAQLEARLAELPEleaELRRLEREVEVARELYESLLQRLEEArlAEALT 384
|
....*.
gi 112420968 514 ATNAEI 519
Cdd:COG3206 385 VGNVRV 390
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
427-649 |
1.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 427 EVQRLEALLKALKSECQgQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:COG4942 21 AAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKqLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 506 QEKERAIEATNAEITKLRSRVDLKLqeLQHLKNEGDHLRN---VQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG 582
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAL--LLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112420968 583 RTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK 649
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
450-665 |
2.25e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 450 MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLK 529
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 530 LQELQHLKNE-GDHLRNVQT--ECEALKLQMTEKD------------KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
Cdd:COG4942 96 RAELEAQKEElAELLRALYRlgRQPPLALLLSPEDfldavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112420968 595 LEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS 665
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
80-507 |
2.67e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 80 LEEYSHQVKDLQRRLNE---SNELHEKQKFYLRQSVIDLQTKLQEMQMER--------DAMADIRRRESQSQE------D 142
Cdd:PRK02224 316 REELEDRDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAaeleseleEAREAVEDRREEIEEleeeieE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 143 LRNQLQNTVHELEAAKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEE--ASGK-KICEHDSMSTLHFRSLG 219
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEELREERD----ELREREAELEATLRTARERVEEAEAllEAGKcPECGQPVEGSPHVETIE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 220 SAISKIlRELDTEISYLKGRIFPVEDQLEALKS--ESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
Cdd:PRK02224 472 EDRERV-EELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERAAEL 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 298 QSQMEIIQEQARNQnsmyMRQLSDLESTVSQLRSELREAKRMYE--DKTEELEKQLVLANSELTEARTERDQFSQesgnL 375
Cdd:PRK02224 550 EAEAEEKREAAAEA----EEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAE----L 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 376 DDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSEcQGQMERQMAAIQG 455
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEFDEAR------------IEEAREDKERAEEYLEQVEEKLDELREE-RDDLQAEIGAVEN 688
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 112420968 456 KNESLEKVSSLTAQLESTKEMLRKV---VEELTAKKMTL--ESSERTISDLTTSLQE 507
Cdd:PRK02224 689 ELEELEELRERREALENRVEALEALydeAEELESMYGDLraELRQRNVETLERMLNE 745
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
477-682 |
3.01e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 477 LRKVVEELTAKKMTLESsertISDLTTSLQEKERAIEATNAEITKLRSRVDLklQELQHLKNEgdhLRNVQTECEALKLQ 556
Cdd:COG4913 240 AHEALEDAREQIELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAE---LEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 557 MTEKDKVIEILRQQIENMTQLVGQHGrtagamQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVK 636
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNG------GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 112420968 637 LVNAGSERLRAVKDIK----QERDQLLNEVKTSRSELNNLSEEYEVLKRN 682
Cdd:COG4913 385 LRAEAAALLEALEEELealeEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
357-819 |
3.34e-06 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 51.23 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT---IDHLRRELDNRNMEVQRLEA 433
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGgkkYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 434 LLKALKSECQgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLtTSLQEKERAIE 513
Cdd:pfam05622 81 ARDDYRIKCE-ELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLEATVETYKKKLEDL-GDLRRQVKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 514 ATNAEITK--------------LRSRVDLKLQELQ--HLKNEGDHLRNVQTECEALKLQ------MTEKDKVIE---ILR 568
Cdd:pfam05622 159 ERNAEYMQrtlqleeelkkanaLRGQLETYKRQVQelHGKLSEESKKADKLEFEYKKLEeklealQKEKERLIIerdTLR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 569 QQIENM--TQLVGQHGRTAGAMQVEKAQ---------LEKEINDRRMELK-ELKILKDKKDAKIRELEARVSDLELEKVK 636
Cdd:pfam05622 239 ETNEELrcAQLQQAELSQADALLSPSSDpgdnlaaeiMPAEIREKLIRLQhENKMLRLGQEGSYRERLTELQQLLEDANR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 637 LVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFrnkSEEMEmttnklkmQLKSAQSELEQTRNTLK 716
Cdd:pfam05622 319 RKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKL---EEHLE--------KLHEAQSELQKKKEQIE 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 717 SMEgsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTnANKEKHFLKEEKSKlsQELSTVATEKNKMAG-ELEVL 795
Cdd:pfam05622 388 ELE-------------PKQDSNLAQKIDELQEALRKKDEDMK-AMEERYKKYVEKAK--SVIKTLDPKQNPASPpEIQAL 451
|
490 500
....*....|....*....|....
gi 112420968 796 RSQERRLKEKVTNMEVALDKASLQ 819
Cdd:pfam05622 452 KNQLLEKDKKIEHLERDFEKSKLQ 475
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
283-712 |
3.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 283 LTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEAR 362
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 363 TERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSEC 442
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKK------------AEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 443 QGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTA------------KKMTLESSERTISDLTTSLQEK 508
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkaEEEKKKVEQLKKkeaeekkkaeelKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAM 588
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-----ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 589 QVEK------AQLEKEINDRRMELKELK--ILK---DKKDAKIR-ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD 656
Cdd:PTZ00121 1750 KKDEeekkkiAHLKKEEEKKAEEIRKEKeaVIEeelDEEDEKRRmEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMED 1829
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 657 QLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEE---MEMTTNKLKMQLKSAQSELEQTR 712
Cdd:PTZ00121 1830 SAIKEVADSKNMQLEEADAFEKHKFNKNNENGEdgnKEADFNKEKDLKEDDEEEIEEAD 1888
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-820 |
3.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 647 AV-KDIKQERDQLLnevkTSRSELNNLSEEYEVLKRNFRNKSEEMEmttnklkmQLKSAQSELEQTRNTLksmegsdgha 725
Cdd:COG4942 112 ALyRLGRQPPLALL----LSPEDFLDAVRRLQYLKYLAPARREQAE--------ELRADLAELAALRAEL---------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 726 mkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
Cdd:COG4942 170 -------EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|....*
gi 112420968 806 VTNMEVALDKASLQF 820
Cdd:COG4942 243 TPAAGFAALKGKLPW 257
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
454-681 |
5.50e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 5.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL-----TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDL 528
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLnplreEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 529 KLQELQHLKNEGD---------HLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlVGQHGRTAGAMQVEKAQLEKEI 599
Cdd:PRK05771 119 LEQEIERLEPWGNfdldlslllGFKYVSVFVGTVPEDKLEELKLESDVENVEY-----ISTDKGYVYVVVVVLKELSDEV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 600 ND--RRMELKELKILKDKK-DAKIRELEARVSDLElekvklvnagSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEY 676
Cdd:PRK05771 194 EEelKKLGFERLELEEEGTpSELIREIKEELEEIE----------KERESLLEELKELAKKYLEELLALYEYLEIELERA 263
|
....*
gi 112420968 677 EVLKR 681
Cdd:PRK05771 264 EALSK 268
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
593-814 |
9.06e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 9.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 593 AQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDIKQERDQ--LLNEVKTSRSELN 670
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGyeLLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 671 NLSEEYEVLKRNFRNKSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG-MQKQITAKRGQIDALQSK 749
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEIS----ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGeLEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112420968 750 IQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALD 814
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
310-803 |
9.98e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 9.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 310 NQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESR----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 390 EKELSLekeQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEA----LLKALKSECQ------GQMERQMAAIQGKNES 459
Cdd:pfam05483 316 EEDLQI---ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAttcsLEELLRTEQQrlekneDQLKIITMELQKKSSE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 460 LEKVSSLTAQLESTKEMLRKVVEE----LTAKKMTLESSER---TISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE 532
Cdd:pfam05483 393 LEEMTKFKNNKEVELEELKKILAEdeklLDEKKQFEKIAEElkgKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 533 LQHLKNE--GDHLRNVQTECEALKLQMTEK-------DKVIEILRQQ--IENMTQLVGQHGRTAGAMQVEKAQLEKEIND 601
Cdd:pfam05483 473 VEDLKTEleKEKLKNIELTAHCDKLLLENKeltqeasDMTLELKKHQedIINCKKQEERMLKQIENLEEKEMNLRDELES 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 602 RRMELK----ELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYE 677
Cdd:pfam05483 553 VREEFIqkgdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 678 VLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTR----NTLKSMEGSDG---HAMKVAMGMQKQITAKRGQIDALQSK- 749
Cdd:pfam05483 633 AYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKiseeKLLEEVEKAKAiadEAVKLQKEIDKRCQHKIAEMVALMEKh 712
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112420968 750 ----IQFLEEAMTNANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRLK 803
Cdd:pfam05483 713 khqyDKIIEERDSELGLYKNKEQEQSSakaALEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
315-525 |
1.03e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 315 YMRQLSDLESTVSQLR------SELREAKRMYEDKTEELEK-QLVLANSELTEARTERDQFSQESGNLDDQLQKL---LA 384
Cdd:COG4913 233 HFDDLERAHEALEDAReqiellEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLeaeLE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 385 DLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDNRNMEVQRLEALLKALKsecqgqmerqMAAIQGKNES 459
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDRLEqlereIERLERELEERERRRARLEALLAALG----------LPLPASAEEF 382
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112420968 460 LEKVSSLTAQLESTKEMLRKVVEELTakkmtlessertisDLTTSLQEKERAIEATNAEITKLRSR 525
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALA--------------EAEAALRDLRRELRELEAEIASLERR 434
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
72-581 |
1.33e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 49.36 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 72 GKEHFERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
Cdd:pfam07111 126 GAEMVRKNLEEGSQreleEIQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 147 LQNTVHELEAAKCLKEDMLKDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEA 199
Cdd:pfam07111 206 LSKTQEELEAQVTLVESLRKYVGEQVppevhsqtwELERQELLDTMQHLQEDRAdlqatvellqvrvqslthMLALQEEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 200 SGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE---------SQNKIELLLQQH-QDRI 269
Cdd:pfam07111 286 LTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQvaelqeqvtSQSQEQAILQRAlQDKA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 270 EQLISEH------EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEDK 343
Cdd:pfam07111 366 AEVEVERmsakglQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS--LSNRLSYAVR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 344 TEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREldN 423
Cdd:pfam07111 444 KVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQ--Q 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 424 RNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtISDLTT 503
Cdd:pfam07111 522 LSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 599
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 112420968 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQH 581
Cdd:pfam07111 600 RLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQ 677
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
505-677 |
1.48e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG-- 582
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEAR---LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 583 RTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvnagserlRAVKDIKQERDQLLNEV 662
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE--------------AELEEKKAELDEELAEL 154
|
170
....*....|....*
gi 112420968 663 KTSRSELNNLSEEYE 677
Cdd:COG1579 155 EAELEELEAEREELA 169
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-526 |
1.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 287 ASSARSQANSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSELREAKRMYEDKTE---ELEKQLVLANSELTEART 363
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELE----KELAALKKEEKALLKQLAALERRIAALARrirALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 364 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQ 443
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 444 GQMERQMAAIQGKNESLekvssltAQLESTKEMLRKVVEELTAKKmtlESSERTISDLTTSLQEKERAIEATNAEITKLR 523
Cdd:COG4942 171 AERAELEALLAELEEER-------AALEALKAERQKLLARLEKEL---AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
...
gi 112420968 524 SRV 526
Cdd:COG4942 241 ERT 243
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
589-681 |
2.36e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.32 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 589 QVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKL---VNAGSERLRAVKDIKQERDQLLNEVKTS 665
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEArseERREIRKDREISRLDREIERLERELEEE 484
|
90
....*....|....*.
gi 112420968 666 RSELNNLSEEYEVLKR 681
Cdd:COG2433 485 RERIEELKRKLERLKE 500
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
495-801 |
2.38e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 495 ERTISDLTTSLQEKERAIEATNAEITKLRSRVD---LKLQELQHLKNEGDHLR--NVQTECEALKLQMTEKDKVIEILRQ 569
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEqakEGLSALNRLLPRLNLLAdeTLADRVEEIREQLDEAEEAKRFVQQ 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 570 QIENMTQLVGQhgrtAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAkIRELEARVSDLELEK-VKLVNAGS---ERL 645
Cdd:PRK04863 916 HGNALAQLEPI----VSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA-LTEVVQRRAHFSYEDaAEMLAKNSdlnEKL 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 646 RA-VKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEememttnklkmQLKSAQSELEQTrnTLKSMEGSDGH 724
Cdd:PRK04863 991 RQrLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQ-----------MLQELKQELQDL--GVPADSGAEER 1057
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEEKSKLSQELSTVATEKN------KMAGELEVLRSQ 798
Cdd:PRK04863 1058 ARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKK---LRKLERDYHEMREQVVNAKAgwcavlRLVKDNGVERRL 1134
|
...
gi 112420968 799 ERR 801
Cdd:PRK04863 1135 HRR 1137
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
172-836 |
2.81e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 172 IEQLRKMMLSHEGVLQEIRSILVdfeeasgkKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRifpvedqlealk 251
Cdd:pfam12128 181 IDKIAKAMHSKEGKFRDVKSMIV--------AILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKIR------------ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 252 sesqNKIELLlqqhQDRIEQLISEHeVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRS 331
Cdd:pfam12128 241 ----PEFTKL----QQEFNTLESAE-LRLSHLHFGYKSDETL---IASRQEERQETSAELNQLLRTLDDQWKEKRDELNG 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 332 ELREAKRMYEDKTEELE------KQLVLANSELTEARTER-DQFSQESGNLDDQLQKLLadlhkrEKELSLEKEQNKRLW 404
Cdd:pfam12128 309 ELSAADAAVAKDRSELEaledqhGAFLDADIETAAADQEQlPSWQSELENLEERLKALT------GKHQDVTAKYNRRRS 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 405 DRDTGNSITIDHLRRELDNRNMEVQRL----EALLKALKSECQGQMErqmaaiQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam12128 383 KIKEQNNRDIAGIKDKLAKIREARDRQlavaEDDLQALESELREQLE------AGKLEFNEEEYRLKSRLGELKLRLNQA 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 481 V---EELTAKKMTLESSERTISDLTTSLQEKERAieatNAEITKLRSRVDlklQELQHLKNEGDHLRNVQTECEALKLQM 557
Cdd:pfam12128 457 TatpELLLQLENFDERIERAREEQEAANAEVERL----QSELRQARKRRD---QASEALRQASRRLEERQSALDELELQL 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 558 TEKD-KVIEILRQQIENMTQLVG------QHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDL 630
Cdd:pfam12128 530 FPQAgTLLHFLRKEAPDWEQSIGkvispeLLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 631 ElekvklvnagsERLRAVKDIKQERDQllnEVKTSRSELNNLSEEYEVLKRNFRNKSE-------EMEMTTNKLKMQLKS 703
Cdd:pfam12128 610 E-----------EALQSAREKQAAAEE---QLVQANGELEKASREETFARTALKNARLdlrrlfdEKQSEKDKKNKALAE 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 704 AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQitakrgqidalqskiQFLEEAMTNANKEKHFLKEEKSKLSQELSTVAT 783
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDKKHQAWLEEQKE---------------QKREARTEKQAYWQVVEGALDAQLALLKAAIAA 740
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 112420968 784 EKNKMAGELEVLRSQ-ERRLKEKVTNMEVALDKAslqfAECQDIIQRQEQESVR 836
Cdd:pfam12128 741 RRSGAKAELKALETWyKRDLASLGVDPDVIAKLK----REIRTLERKIERIAVR 790
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
108-832 |
2.98e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDL--RNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGV 185
Cdd:TIGR00606 191 LRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItsKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 186 LQEIRSILVDFEEASGkkicEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQnkielLLQQH 265
Cdd:TIGR00606 271 IKALKSRKKQMEKDNS----ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERR-----LLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI--------IQEQARNQNSMYMRQLSDLESTVSQLRSELREAK 337
Cdd:TIGR00606 342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELdgfergpfSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 338 RMYEDKTEELEKQL-----------VLANSELTEARTERDQFSQESGNLDD------QLQKLLADLHKREKELSLEKEQN 400
Cdd:TIGR00606 422 RLKQEQADEIRDEKkglgrtielkkEILEKKQEELKFVIKELQQLEGSSDRileldqELRKAERELSKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 401 KRLWDRDtgNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEmLRKV 480
Cdd:TIGR00606 502 EVKSLQN--EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ-LEDW 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 481 VEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEK 560
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAML 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 561 DKVIEILRQQIENMTqlvgQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKkdaKIRELEARVSDLELEK----VK 636
Cdd:TIGR00606 659 AGATAVYSQFITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRdemlGL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 637 LVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKR-NFRNKSEEMEMT----TNKLKMQLKSAQSELEQT 711
Cdd:TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTiMPEEESAKVCLTdvtiMERFQMELKDVERKIAQQ 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 712 RNTLKSMEGSdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGE 791
Cdd:TIGR00606 812 AAKLQGSDLD-----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 112420968 792 LEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
643-820 |
3.08e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 643 ERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEGSD 722
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELE----DLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 723 GHAMKvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELS----TVATEKNKMAGELEVLRSQ 798
Cdd:COG1579 83 GNVRN-----NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAeleaELEEKKAELDEELAELEAE 157
|
170 180
....*....|....*....|..
gi 112420968 799 ERRLKEKVTNMEVALDKASLQF 820
Cdd:COG1579 158 LEELEAEREELAAKIPPELLAL 179
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
297-842 |
4.21e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 297 IQSQMEIIQEQARNQ---NSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQ 370
Cdd:pfam10174 72 LQLTIQALQDELRAQrdlNQLLQQDFTTSPVDGEDKFSTPElteENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQ 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 371 ESGNLDDQLQKLLADLHKRekelSLEKEQNKRLWDRdtgnsitidhlRRELDNRNMEVQRLEALLKALKSECQGQMERQM 450
Cdd:pfam10174 152 TLGARDESIKKLLEMLQSK----GLPKKSGEEDWER-----------TRRIAEAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 451 AAIQGKNESlekvssltaqleSTKEMLRKVVEELTAKKMTLESSERTISDLTTSL-----------QEKERAIEATNA-- 517
Cdd:pfam10174 217 RRNQLQPDP------------AKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLktngllhtedrEEEIKQMEVYKShs 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 518 -----EITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC----EALKLQMTEKDKVIEIL-------RQQIENMTQLVGQH 581
Cdd:pfam10174 285 kfmknKIDQLKQELSKKESELLALQTKLETLTNQNSDCkqhiEVLKESLTAKEQRAAILqtevdalRLRLEEKESFLNKK 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 582 GRTAGAMQVEKAQLEKEINDRR--MELKELKI-------------LKDKkDAKIRELEARVSDLELEK-------VKLVN 639
Cdd:pfam10174 365 TKQLQDLTEEKSTLAGEIRDLKdmLDVKERKInvlqkkienlqeqLRDK-DKQLAGLKERVKSLQTDSsntdtalTTLEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 640 AGSERLRAVKDIKQERD----QLLNEVKTSRSELNNLSEEYEVLKRNFRNK----SEEMEMTTN------KLKMQLKSAQ 705
Cdd:pfam10174 444 ALSEKERIIERLKEQREredrERLEELESLKKENKDLKEKVSALQPELTEKesslIDLKEHASSlassglKKDSKLKSLE 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 706 SELEQTRNTLKSMEGSDGHAMKVAMG-------------MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKS 772
Cdd:pfam10174 524 IAVEQKKEECSKLENQLKKAHNAEEAvrtnpeindrirlLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIA 603
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 112420968 773 KLSQELSTVATEKNKMAGELEVLRSQERRLKEKV------TNMEVALDKASLQFAECQDIIQ--RQEQESVRLKLQHT 842
Cdd:pfam10174 604 ELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLleearrREDNLADNSQQLQLEELMGALEktRQELDATKARLSST 681
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-667 |
4.23e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELqhlkneGD 541
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL------GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 542 HLRNVQTEcealKLQMTEKDKV------------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKEL 609
Cdd:COG3883 91 RARALYRS----GGSVSYLDVLlgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 112420968 610 KILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRS 667
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
495-849 |
4.32e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 495 ERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKL----QMTEKDKVIEILRQQ 570
Cdd:TIGR04523 81 EQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDkfltEIKKKEKELEKLNNK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 571 IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL--KELKILK-DKKDAKIRELEARVSDLELEKVKLVNAgserlra 647
Cdd:TIGR04523 161 YNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlkLELLLSNlKKKIQKNKSLESQISELKKQNNQLKDN------- 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 648 VKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEmTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAmk 727
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK-- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 728 vamGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVT 807
Cdd:TIGR04523 311 ---ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK 387
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 112420968 808 NMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:TIGR04523 388 NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
327-491 |
4.61e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 4.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 327 SQLRSELREAKRMYEDKTEELE---KQLVL-ANSELTEARTErdqFSQESGNLDDQLQKLLADLHKREKELSLEKEqnkr 402
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEaikKEALLeAKEEIHKLRNE---FEKELRERRNELQKLEKRLLQKEENLDRKLE---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 403 lwdrdtgnsiTIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQmaaiqgkNESLEKVSSLTAQlESTKEMLRKVVE 482
Cdd:PRK12704 104 ----------LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ-------LQELERISGLTAE-EAKEILLEKVEE 165
|
....*....
gi 112420968 483 ELTAKKMTL 491
Cdd:PRK12704 166 EARHEAAVL 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-676 |
4.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 226 LRELDTEISYLKGRIfpveDQLEALKSESQNKIELLLQQHQ----DRIEQLisehEVEITGLTEKASSARSQANSIQSQM 301
Cdd:COG4913 297 LEELRAELARLEAEL----ERLEARLDALREELDELEAQIRgnggDRLEQL----EREIERLERELEERERRRARLEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 302 EIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 382 LLADLhkrEKELSLEKEQ------------------------------------------NKRLWDRDTGNSITIDHLRR 419
Cdd:COG4913 445 LRDAL---AEALGLDEAElpfvgelievrpeeerwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVYERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 420 ELDNRNMEV---QRLEALLKALKSECQGQMERQMaaiqGKNESLEKVSSlTAQLES-----TKEMLRKVVEELTAKKMTL 491
Cdd:COG4913 522 GLPDPERPRldpDSLAGKLDFKPHPFRAWLEAEL----GRRFDYVCVDS-PEELRRhpraiTRAGQVKGNGTRHEKDDRR 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 492 E---------SSERTISDLTTSLQEKERAIEATNAEITKLRSRVDL---KLQELQHLKNEGDHLRNV---QTECEALKLQ 556
Cdd:COG4913 597 RirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDAlqeRREALQRLAEYSWDEIDVasaEREIAELEAE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 557 MTEKDK---VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEArvsdLELE 633
Cdd:COG4913 677 LERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR----ALLE 752
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 112420968 634 KVKLVNAGSERLRAV-KDIKQERDQLLNEVKTSRSELNNLSEEY 676
Cdd:COG4913 753 ERFAAALGDAVERELrENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
492-706 |
4.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 492 ESSERTISDLTTSLQEKERAIEATNAEITKLRSR---VDLKLQELQHLKNegdhLRNVQTECEALKLQMTEKDKVIEILR 568
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglVDLSEEAKLLLQQ----LSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 569 QQIENMTQLVGQHGRTAGAmqvekAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-----QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112420968 649 KDIKQERDQLLN----EVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKmQLKSAQS 706
Cdd:COG3206 322 LEALQAREASLQaqlaQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE-EARLAEA 382
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
454-848 |
8.40e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 8.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS-------ERTISDLTTSLQEKERAIEATNAEITKLRSRV 526
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkyndlKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 527 DLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL 606
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 607 KELKILKDKKDAKIRELEARVSDLELEKVKLVNagSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNK 686
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN--KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 687 seemEMTTNKLKMQLKSAQSELEQTRNTLKSMegsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
Cdd:TIGR04523 355 ----ESENSEKQRELEEKQNEIEKLKKENQSY--------------KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 767 LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIK 846
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
..
gi 112420968 847 EL 848
Cdd:TIGR04523 497 EL 498
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
120-670 |
1.00e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 120 QEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA 199
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 200 SGKKICEHDSMSTLHFRSLGSAISKILRELDT---EISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEH 276
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKireARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 277 EVEITGLT----------------EKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMY 340
Cdd:pfam12128 450 KLRLNQATatpelllqlenfderiERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 341 EDKTEELEKQLvlanselteaRTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgNSITIDHLRRE 420
Cdd:pfam12128 530 FPQAGTLLHFL----------RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNL--------YGVKLDLKRID 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 421 LDNRNMEVQRLEALLKALKSECQGQMERQMAAiqgknesLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISD 500
Cdd:pfam12128 592 VPEWAASEEELRERLDKAEEALQSAREKQAAA-------EEQLVQANGELEKAS-------REETFARTALKNARLDLRR 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 501 LTTSLQ-EKERAIEATNAEITKL-RSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEilrqqienmTQLV 578
Cdd:pfam12128 658 LFDEKQsEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE---------GALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 579 GQHGRTAGAMQVEKAQLEKEIN----DRRMELKELKILKD---KKDAKIRELEARVSDLE------------------LE 633
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKAELKaletWYKRDLASLGVDPDviaKLKREIRTLERKIERIAvrrqevlryfdwyqetwlQR 808
|
570 580 590
....*....|....*....|....*....|....*..
gi 112420968 634 KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELN 670
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
587-838 |
1.15e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 45.29 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 587 AMQVEKAQLEKEINDRRMELKELKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSR 666
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELK-------EKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 667 SELNNLSEEYEVLKRNFRNKSEEMEmTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAmgmqKQITAKRGQIDAL 746
Cdd:COG1340 78 EERDELNEKLNELREELDELRKELA-ELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELV----EKIKELEKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 747 QSKIQFLEEAMTNANKEKHfLKEEKSKLSQELSTVATE----KNKMA---GELEVLRSQERRLKEKVTNMEVALDKASLQ 819
Cdd:COG1340 153 KKALEKNEKLKELRAELKE-LRKEAEEIHKKIKELAEEaqelHEEMIelyKEADELRKEADELHKEIVEAQEKADELHEE 231
|
250
....*....|....*....
gi 112420968 820 FAECQDIIQRQEQESVRLK 838
Cdd:COG1340 232 IIELQKELRELRKELKKLR 250
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
224-397 |
1.37e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.20 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 224 KILRELDTEISYLKGRIFPVEDQL-------EALKSESQnKIEL--LLQQHQDRIEQlISEhevEITGLTEKASSARSQA 294
Cdd:PRK10929 79 KLSAELRQQLNNERDEPRSVPPNMstdaleqEILQVSSQ-LLEKsrQAQQEQDRARE-ISD---SLSQLPQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 295 NSIQSQmeiIQEQARNQNSMYMRQLSDLESTVSQLRSelreakrmyedKTEELEKQLVLANSELTEARTERDQFSQESGN 374
Cdd:PRK10929 154 NEIERR---LQTLGTPNTPLAQAQLTALQAESAALKA-----------LVDELELAQLSANNRQELARLRSELAKKRSQQ 219
|
170 180
....*....|....*....|....*.
gi 112420968 375 LDDQLQKL---LADLHKREKELSLEK 397
Cdd:PRK10929 220 LDAYLQALrnqLNSQRQREAERALES 245
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
287-660 |
1.57e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 287 ASSARSQANSIQSQMEIIQEQARNQNSMYMRQlSDLESTVSQLrselrEAKRMYEDKTEELEKQLVLANSELTEARTERD 366
Cdd:PRK11281 31 SNGDLPTEADVQAQLDALNKQKLLEAEDKLVQ-QDLEQTLALL-----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 367 QFSQEsgnLDDQLQKLLADLHKREkelsLEKEQNKRL-----WDRD--TGNSITI------DHLRRELDNRNMEVQRLEA 433
Cdd:PRK11281 105 ALKDD---NDEETRETLSTLSLRQ----LESRLAQTLdqlqnAQNDlaEYNSQLVslqtqpERAQAALYANSQRLQQIRN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 434 LLK-------ALKSECQGQMERQMAAIQGKNE----SLEKVSSLTaqlestkEMLRKVVEELTAKKMTLessERTISDLT 502
Cdd:PRK11281 178 LLKggkvggkALRPSQRVLLQAEQALLNAQNDlqrkSLEGNTQLQ-------DLLQKQRDYLTARIQRL---EHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 503 TSLQEKERAI-EATnaeitklrsrvdlkLQELQHLKNEGDHLRN--VQTECEAlKLQMTEKdkvieiLRQQIENMTQLVG 579
Cdd:PRK11281 248 EAINSKRLTLsEKT--------------VQEAQSQDEAARIQANplVAQELEI-NLQLSQR------LLKATEKLNTLTQ 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 580 QHGRTA----GAMQVEKAqLEKEINDRRMELKELKILKDKK-----DAKIRELEARVSDLELEKVklvnagserlravkD 650
Cdd:PRK11281 307 QNLRVKnwldRLTQSERN-IKEQISVLKGSLLLSRILYQQQqalpsADLIEGLADRIADLRLEQF--------------E 371
|
410
....*....|
gi 112420968 651 IKQERDQLLN 660
Cdd:PRK11281 372 INQQRDALFQ 381
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
116-810 |
1.84e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSntqieqlrkmmlshegvlQEIRSILVD 195
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELD------------------QELRKAERE 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 196 FEEASGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKgRIFPVEDQLEALKSESQNKIElllqqhqdRIEQLISE 275
Cdd:TIGR00606 487 LSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN-HHTTTRTQMEMLTKDKMDKDE--------QIRKIKSR 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 276 HEVEITGLTEKASSARSQANSIQSQMEIIQeQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDK------TEE 346
Cdd:TIGR00606 558 HSDELTSLLGYFPNKKQLEDWLHSKSKEIN-QTRDRLAKLNKELASLEQNKNHINNELEskeEQLSSYEDKlfdvcgSQD 636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 347 LEKQLVLANSELTEARTERDQFSQESGNLDDQLQklladlhkrekELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNM 426
Cdd:TIGR00606 637 EESDLERLKEEIEKSSKQRAMLAGATAVYSQFIT-----------QLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLR 705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 427 ----EVQRLEALLKALKSEC----------QGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLE 492
Cdd:TIGR00606 706 lapdKLKSTESELKKKEKRRdemlglapgrQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE---EE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 493 SSERTISDLTT------SLQEKERAIEATNAEITKlrSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMTEKDKVIe 565
Cdd:TIGR00606 783 SAKVCLTDVTImerfqmELKDVERKIAQQAAKLQG--SDLDRTVQQVNQEKQEKQHeLDTVVSKIELNRKLIQDQQEQI- 859
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 566 ilrQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERL 645
Cdd:TIGR00606 860 ---QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 646 R----AVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKrnfrnkseemEMTTNKLKMQLKSAQSELEQTRNTLKSMEGS 721
Cdd:TIGR00606 937 KkaqdKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQK----------ETELNTVNAQLEECEKHQEKINEDMRLMRQD 1006
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 722 DGHAMKVAMGMQKQITAKRgqidaLQSKIQFLEEAMTNANKEKH-----FLKEEKSKLSQELSTVATEKNKMAGELEVLR 796
Cdd:TIGR00606 1007 IDTQKIQERWLQDNLTLRK-----RENELKEVEEELKQHLKEMGqmqvlQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081
|
730
....*....|....
gi 112420968 797 SQERRLKEKVTNME 810
Cdd:TIGR00606 1082 KEIKHFKKELREPQ 1095
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
434-843 |
2.52e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 434 LLKALKSECQGQMERQMAAI---QGKN-----ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:COG4717 39 LLAFIRAMLLERLEKEADELfkpQGRKpelnlKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 506 QEKERAIEA--TNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMT-QLVGQHG 582
Cdd:COG4717 119 EKLEKLLQLlpLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 583 RTAGAMQVEKAQLEKEINDRRMELKELK---------ILKDKKDAKIRELE----------------------------- 624
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEeeleqleneLEAAALEERLKEARlllliaaallallglggsllsliltiagv 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 625 --------ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYevLKRNFRNKSEEMEMTTNK 696
Cdd:COG4717 279 lflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQitakrgQIDALQSKIQFLEEAMTNANKE---------KHFL 767
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE------EYQELKEELEELEEQLEELLGEleellealdEEEL 430
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112420968 768 KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEkvtnmEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELRELAEEWAALKLALEL 501
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
318-519 |
3.52e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 318 QLSDLESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsleK 397
Cdd:COG3883 17 QIQAKQKELSELQAELEAA----QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---G 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 398 EQNKRLWDrdtgNSITIDHLRRELDNRNME--VQRLEALLKAlksecqgqMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
Cdd:COG3883 90 ERARALYR----SGGSVSYLDVLLGSESFSdfLDRLSALSKI--------ADADADLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 112420968 476 MLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEI 519
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
244-814 |
3.59e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 244 EDQLEALKsESQNKIELLLQQHQDRIEQLISEHEV------EITGLTEKASSARSQANSIQSQMEII---------QEQA 308
Cdd:pfam01576 11 EEELQKVK-ERQQKAESELKELEKKHQQLCEEKNAlqeqlqAETELCAEAEEMRARLAARKQELEEIlhelesrleEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 309 RNQNSMYMR-----QLSDLESTVSQ---LRSELREAKRMYEDKTEELEKQLVL---ANSELT-EARTERDQFSQESGNLD 376
Cdd:pfam01576 90 RSQQLQNEKkkmqqHIQDLEEQLDEeeaARQKLQLEKVTTEAKIKKLEEDILLledQNSKLSkERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 377 DQ------LQKL----------LADLHKREKELSLEKEQNKRLWDRDTGNsitidhLRRELDNRNMEVQRLEALLKALKS 440
Cdd:pfam01576 170 EEeekaksLSKLknkheamisdLEERLKKEEKGRQELEKAKRKLEGESTD------LQEQIAELQAQIAELRAQLAKKEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 441 ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISDLTTSLQ----EKERAIEATN 516
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISELQ-------EDLESERAARNKAEKQRRDLGEELEalktELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 517 AEiTKLRSRvdlKLQELQHLKNEGDHLRNVQtecEALKLQMTEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
Cdd:pfam01576 317 AQ-QELRSK---REQEVTELKKALEEETRSH---EAQLQEMRQKHT------QALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 597 KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEY 676
Cdd:pfam01576 384 SENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 677 EVLKRNFRNKSEEMEMTTNKlKMQLKSAQSELEQTRNTLKSMegsdghamkvamgMQKQITAKRG---QIDALQSKIQFL 753
Cdd:pfam01576 464 SSLESQLQDTQELLQEETRQ-KLNLSTRLRQLEDERNSLQEQ-------------LEEEEEAKRNverQLSTLQAQLSDM 529
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112420968 754 EEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALD 814
Cdd:pfam01576 530 KKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-518 |
3.98e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 77 ERVLEEYSHQVKDLQRRLNESNELHE------KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNT 150
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEErleelkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 151 VHELEAAKCLKEDMLKDSNTQIEQLRKmmlshegVLQEIRSILVDFEEASGK------KICEHDSmstlhfrslgsaiSK 224
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEELKKAKGKcpvcgrELTEEHR-------------KE 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 225 ILRELDTEISYLKGRIFPVEDQLEALKSESQnKIELLLQqhqdRIEQLISEHEV--EITGLTEKASSARSQansiqsQME 302
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVLK----KESELIKLKELaeQLKELEEKLKKYNLE------ELE 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 303 IIQEQARNQNsmymRQLSDLESTVSQLRSELREAKRmYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL 382
Cdd:PRK03918 522 KKAEEYEKLK----EKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 383 LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKS--------ECQGQMERQMAAIQ 454
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkyseeeyeELREEYLELSRELA 676
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112420968 455 GKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLtTSLQEKERAIEATNAE 518
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
418-689 |
4.08e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 418 RRELDNRNMEVQRLEALLKALKSECQGQME------------RQMAAIQGKN-ESLEKVSSltAQLESTKEMLRKVVEEL 484
Cdd:PHA02562 152 RRKLVEDLLDISVLSEMDKLNKDKIRELNQqiqtldmkidhiQQQIKTYNKNiEEQRKKNG--ENIARKQNKYDELVEEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 485 TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLkLQELQHLKNEGDhlrnvqtECEALKLQMTEKDKVI 564
Cdd:PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ-FQKVIKMYEKGG-------VCPTCTQQISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 565 EILRQQIENMTQLVGQhgrtAGAMQVEKAQLEKEINDRRMELKELKilkdkkdakirelearvSDLELEKVKLVNAgser 644
Cdd:PHA02562 302 TKIKDKLKELQHSLEK----LDTAIDELEEIMDEFNEQSKKLLELK-----------------NKISTNKQSLITL---- 356
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 112420968 645 LRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEE 689
Cdd:PHA02562 357 VDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
317-681 |
4.74e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 317 RQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR-EKELSL 395
Cdd:pfam02463 155 RLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 396 EKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
Cdd:pfam02463 235 NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 476 MLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALK 554
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEeLLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 555 LQMTEKDKVIEI--LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLEL 632
Cdd:pfam02463 395 EELELKSEEEKEaqLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 112420968 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKR 681
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
114-840 |
4.92e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIR 190
Cdd:pfam01576 191 DLEERLKKEEKGRQELEKAKRKLEGESTDLQEQiaeLQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 191 SILVDFEEASGKKicehdsmstlhfRSLGSAISKILRELDTEISYLKGRIfpvEDQLE--ALKSESQNKIELLLQQHQDR 268
Cdd:pfam01576 271 AQISELQEDLESE------------RAARNKAEKQRRDLGEELEALKTEL---EDTLDttAAQQELRSKREQEVTELKKA 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 269 IEQLISEHEVEITGLTEKASSArsqANSIQSQMEiiqeQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKTE 345
Cdd:pfam01576 336 LEEETRSHEAQLQEMRQKHTQA---LEELTEQLE----QAKRNKANLEKAKQALESENAELQAELRtlqQAKQDSEHKRK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 346 ELEKQLVLANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRN 425
Cdd:pfam01576 409 KLEGQLQELQARLSESERQRAE-------LAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEET 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 426 MEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT------------------------------------- 548
Cdd:pfam01576 562 EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKkfdqmlaeekaisaryaeerdraeaeareketralsl 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 549 --ECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKI-LKDKKDAKI----- 620
Cdd:pfam01576 642 arALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDeLQATEDAKLrlevn 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 621 ---------RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNfrnkSEEME 691
Cdd:pfam01576 722 mqalkaqfeRDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKG----REEAV 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 692 MTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI--------TAKRGQIDALQSKIQFLEEaMTNANKE 763
Cdd:pfam01576 798 KQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELlqlqedlaASERARRQAQQERDELADE-IASGASG 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 764 KHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNM--EVALDKASLQFAE-CQDIIQRQEQEsVRLKLQ 840
Cdd:pfam01576 877 KSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLttELAAERSTSQKSEsARQQLERQNKE-LKAKLQ 955
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
133-576 |
5.30e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 133 RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMM--LSHEGVLQEIRSILVDFEEAsgkkicehdsm 210
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqlLPLYQELEALEAELAELPER----------- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 211 stlhFRSLGSAISKIlRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKA 287
Cdd:COG4717 148 ----LEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 288 SSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQ 367
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD--NRNMEVQRLEALLKALKSECQGQ 445
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 446 MERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAkkmtlESSERTISDLTTSLQEKERAIEATNAEITKLRSR 525
Cdd:COG4717 383 DEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEE-----LLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 112420968 526 VDLKLQELQHLKNEGDhLRNVQTECEALKLQMTEKDK---VIEILRQQIENMTQ 576
Cdd:COG4717 455 LAELEAELEQLEEDGE-LAELLQELEELKAELRELAEewaALKLALELLEEARE 507
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
121-540 |
5.38e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 121 EMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSN---TQIEQLRKMMLSHEGVLQEIRSILVDFE 197
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNnkeVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 198 EASGKkicEHDSMSTLHFRslgsaiSKILRELDTEISYLKGRIFPVEDQLEALKSESQNK--IELLLQQHQDRIeqlise 275
Cdd:pfam05483 433 ELKGK---EQELIFLLQAR------EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEklKNIELTAHCDKL------ 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 276 hEVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLAN 355
Cdd:pfam05483 498 -LLENKELTQEASDMTLE---LKKHQEDIINCKKQEERM-LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALL 435
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 436 KALKSECQGQMERQMAAIQGKNESLE----------------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
Cdd:pfam05483 653 EEIIDNYQKEIEDKKISEEKLLEEVEkakaiadeavklqkeidkrcqhKIAEMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 112420968 494 SERTISDLTTSLqekERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
Cdd:pfam05483 733 KEQEQSSAKAAL---EIELSNIKAELLSLKKQLEIEKEEKEKLKMEA 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-635 |
6.56e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 6.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 77 ERVLEEYSHQVKDLQRRLNESNELhEKQKFYLRQSVIDLQTKLQEMQmERDAMADIRRRESQSQEDLRNQLQNTVHELEA 156
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRELE-ERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 157 AKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEEASGKKicehdsmstlhfrslgSAISKILRELDTEISYL 236
Cdd:PRK03918 298 LSEFYEEYLDELR----EIEKRLSRLEEEINGIEERIKELEEKEERL----------------EELKKKLKELEKRLEEL 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 237 KGR------IFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIqEQARN 310
Cdd:PRK03918 358 EERhelyeeAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL-KKAKG 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 311 QNSMYMRQLSDlESTVSQLRSELREAKRMYEDKtEELEKQLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKRE 390
Cdd:PRK03918 437 KCPVCGRELTE-EHRKELLEEYTAELKRIEKEL-KEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 391 KELSLEK-EQNKRLWDRDTGNSITidhLRRELDNRNMEVQRLEALLKALKS--ECQGQMERQMAAIQGK-----NESLEK 462
Cdd:PRK03918 513 KKYNLEElEKKAEEYEKLKEKLIK---LKGEIKSLKKELEKLEELKKKLAEleKKLDELEEELAELLKEleelgFESVEE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 463 VSSLTAQLESTKE---MLRKVVEELTAKKMTLESSERTISdlttslqEKERAIEATNAEITKLRSRvdlkLQELQHLKNE 539
Cdd:PRK03918 590 LEERLKELEPFYNeylELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKE----LEELEKKYSE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 540 GDHlrnvqtecEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindRRMELKELKILKDKKDA- 618
Cdd:PRK03918 659 EEY--------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK----AKKELEKLEKALERVEEl 726
|
570
....*....|....*....
gi 112420968 619 --KIRELEARVSDLELEKV 635
Cdd:PRK03918 727 reKVKKYKALLKERALSKV 745
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
224-837 |
8.42e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 304 IQEQARnqnsmymrqlsdLESTVSQLRSELREAKRMYEDKTEELEKQLVLanseltearTERDQFSQESGNLDDQLQKLL 383
Cdd:TIGR00618 340 IEEQRR------------LLQTLHSQEIHIRDAHEVATSIREISCQQHTL---------TQHIHTLQQQKTTLTQKLQSL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 384 AdlhkrEKELSLEKEQNKRLWDRDTGNSITIDHLRREldnRNMEVQRLEALLKALKSECQGQMERQMAAIQ--------G 455
Cdd:TIGR00618 399 C-----KELDILQREQATIDTRTSAFRDLQGQLAHAK---KQQELQQRYAELCAAAITCTAQCEKLEKIHLqesaqslkE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS------ERTISDLTTSLQEKERAIEATNAEITKLRSRVDLK 529
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 530 LQ-ELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGR----TAGAMQVEKAQLEKEINDRRM 604
Cdd:TIGR00618 551 LTsERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaedmLACEQHALLRKLQPEQDLQDV 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 605 ELKELKI---LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEyevLKR 681
Cdd:TIGR00618 631 RLHLQQCsqeLALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQT---LLR 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 682 NFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ--------IDALQSKIQFL 753
Cdd:TIGR00618 708 ELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEevtaalqtGAELSHLAAEI 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 754 EEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQE 833
Cdd:TIGR00618 788 QFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE 867
|
....
gi 112420968 834 SVRL 837
Cdd:TIGR00618 868 QAKI 871
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
561-749 |
9.39e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 9.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElEKVK---- 636
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERR-EELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 637 --------------LVNAGS-----ERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKL 697
Cdd:COG3883 94 alyrsggsvsyldvLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 112420968 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-309 |
1.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLR------NQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQ 187
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAalerriAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 188 EIRSILVDFEEASGKKICEHDSMSTLHFRSLgSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQH 265
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLaeLEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 112420968 266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQAR 309
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
458-647 |
1.20e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDlKLQELQHLK 537
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK-KYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 538 NEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlvgqhgrtagAMQVEKAQLEKEINDRRmelKELKILKDKKD 617
Cdd:COG1579 86 RNNKEYEALQKEIESLKRRISDLEDEILELMERIE--------------ELEEELAELEAELAELE---AELEEKKAELD 148
|
170 180 190
....*....|....*....|....*....|
gi 112420968 618 AKIRELEARVSDLELEKVKLVNAGSERLRA 647
Cdd:COG1579 149 EELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
445-679 |
1.37e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.21 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 445 QMERQMAAIQGKNESLE-----KVSSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTISDLTTSLQEKERAIEAT 515
Cdd:pfam00038 22 FLEQQNKLLETKISELRqkkgaEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLEldnlRLAAEDFRQKYEDELNLRTSA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 516 NAEITKLR--------SRVDLKLQeLQHLKNEGDHLRNV-QTECEALKLQMTEKDKVIEI--------------LRQQ-- 570
Cdd:pfam00038 102 ENDLVGLRkdldeatlARVDLEAK-IESLKEELAFLKKNhEEEVRELQAQVSDTQVNVEMdaarkldltsalaeIRAQye 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 571 -----------------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSdlele 633
Cdd:pfam00038 181 eiaaknreeaeewyqskLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYE----- 255
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 112420968 634 kvklvnagserlRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVL 679
Cdd:pfam00038 256 ------------LQLADYQELISELEAELQETRQEMARQLREYQEL 289
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
251-639 |
1.61e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 42.74 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 251 KSESQNKIElllqqhqdRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQArnQNSMYMRQLSDLESTVSQLR 330
Cdd:pfam13166 91 SIEIQEKIA--------KLKKEIKDHEEKLDAAEANLQKLDKE---KEKLEADFLDEC--WKKIKRKKNSALSEALNGFK 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 331 SELREAKRMYEdkteELEKQLVLANSELTEarterDQFSQESGNLDDQLQKLLADLHKREKEL-SLEKEQnkrLWDRD-T 408
Cdd:pfam13166 158 YEANFKSRLLR----EIEKDNFNAGVLLSD-----EDRKAALATVFSDNKPEIAPLTFNVIDFdALEKAE---ILIQKvI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 409 GNSITIDHLRRELDNRNMeVQRLEALLKALKSEC---QGQMERQMAAIQGK---NESLEKVSSLTAQLESTKEMLRKVVE 482
Cdd:pfam13166 226 GKSSAIEELIKNPDLADW-VEQGLELHKAHLDTCpfcGQPLPAERKAALEAhfdDEFTEFQNRLQKLIEKVESAISSLLA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 483 ELTAkkMTLESSERTISDLTTslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegdhLRNVQTECEALKLQMTEKDK 562
Cdd:pfam13166 305 QLPA--VSDLASLLSAFELDV--EDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----LDSVDAKIESINDLVASINE 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 563 VIEILRQQIENMTQLVgQHGRTA-------------GAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSD 629
Cdd:pfam13166 377 LIAKHNEITDNFEEEK-NKAKKKlrlhlveefkseiDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRD 455
|
410
....*....|
gi 112420968 630 lELEKVKLVN 639
Cdd:pfam13166 456 -HKPGADEIN 464
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
492-840 |
1.71e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 492 ESSERTISDLTTSLQEKE---RAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTEC-EALKLQmtEKDKV 563
Cdd:pfam12128 175 ESPLRHIDKIAKAMHSKEgkfRDVKSMIVAILEDDGVVPpksrLNRQQVEHWIRDIQAIAGIMKIRpEFTKLQ--QEFNT 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 564 IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RMELKELKILKDKKDAKIRELEARVSDLELEkvklVNAGS 642
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLlRTLDDQWKEKRDELNGELSAADAAVAKDRSE----LEALE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 643 ERLRAVKDIKQE-RDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNtlKSMEGS 721
Cdd:pfam12128 329 DQHGAFLDADIEtAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA--KIREAR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 722 DghamkvamgmqKQITAKRGQIDALQSKIQF-LEEAMTNANKEKHFLKEEKSKLSQELSTVATEK-------------NK 787
Cdd:pfam12128 407 D-----------RQLAVAEDDLQALESELREqLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPelllqlenfderiER 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 112420968 788 MAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
Cdd:pfam12128 476 AREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
222-371 |
2.13e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARS--QANSIQS 299
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELED-----LEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112420968 300 QMEIIQEQARNQNSMY---MRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQE 371
Cdd:COG1579 97 EIESLKRRISDLEDEIlelMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
414-572 |
2.63e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 414 IDHLRRELDNRNMEVQRLEALLKALKSECQgQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKV--VEELTAKKMT 490
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLE-AAKTELEDLEKEIKRLElEIEEVEARIKKYEEQLGNVrnNKEYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 491 LESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTEKDKVIEILRQQ 570
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE------LDEELAELEAELEELEAEREELAAK 171
|
..
gi 112420968 571 IE 572
Cdd:COG1579 172 IP 173
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
474-849 |
2.78e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 474 KEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE----LQHLKNE-GDHLRNVQT 548
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEdhekIQHLEEEyKKEINDKEK 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 549 ECEALKLQMTEKDK-------VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKE----LKILKDKKD 617
Cdd:pfam05483 241 QVSLLLIQITEKENkmkdltfLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstQKALEEDLQ 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTnKL 697
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT-KF 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQE 777
Cdd:pfam05483 400 KNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE 479
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112420968 778 LSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASlqfaecQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ------EDIINCKKQEERMLKQIENLEEKEMN 545
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
556-822 |
2.80e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 556 QMTEKDKVIEILRQQIENMTQLVGQHGrtagAMQVEKAQLE--KEINDRRMELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDLERAHE----ALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 634 KVKlvnagserlRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFR-NKSEEMEmttnKLKMQLKSAQSELEQTR 712
Cdd:COG4913 292 LLE---------AELEELRAELARLEAELERLEARLDALREELDELEAQIRgNGGDRLE----QLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 713 NTLKSMEGsdghamkvamgmqkqiTAKRGQIDALQSKIQFlEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGEL 792
Cdd:COG4913 359 RRRARLEA----------------LLAALGLPLPASAEEF-AALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
250 260 270
....*....|....*....|....*....|
gi 112420968 793 EVLRSQERRLKEKVTNMEVALDKASLQFAE 822
Cdd:COG4913 422 RELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
367-505 |
3.13e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 367 QF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDNRNMEVQRLEALLKALkSECQG 444
Cdd:PRK09039 41 QFflSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS-------VANLRASLSAAEAERSRLQALLAEL-AGAGA 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 445 QMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:PRK09039 113 AAEGRAGELAQELDSEKQVSAralaqvelLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
277-519 |
3.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 277 EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKTEELEKQLvl 353
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNElqaELEALQAEIDKLQAEIAEAEAEIEERREELGERA-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 354 anseltearterdQFSQESGNLDDQLQKLL-----ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEV 428
Cdd:COG3883 93 -------------RALYRSGGSVSYLDVLLgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 429 QRLEALLKALKSEcqgqMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQE 507
Cdd:COG3883 160 EALKAELEAAKAE----LEAQQAEQEALLAQLSaEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
250
....*....|..
gi 112420968 508 KERAIEATNAEI 519
Cdd:COG3883 236 AAAAAAAAASAA 247
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
637-764 |
3.42e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.99 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 637 LVNAGSERLR--AVKDIKQERDQLLNEVKTSRSELnnlseeyevlkRNFRNK---------SEEMEMTTNKLKMQLKSAQ 705
Cdd:COG3524 166 LVNQLSERARedAVRFAEEEVERAEERLRDAREAL-----------LAFRNRngildpeatAEALLQLIATLEGQLAELE 234
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 706 SELEQTRNTLksmegSDGHAmkvamgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
Cdd:COG3524 235 AELAALRSYL-----SPNSP---------QVRQLRRRIAALEKQIAAERARLTGASGGD 279
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
217-403 |
3.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 217 SLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRI---EQLISEHEVEITGLTEKASSARSQ 293
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKE-EKALLKQLAALERRIaalARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 294 ANSIQSQMEIIQEQARNQ-NSMYM--------------------RQLSDLESTVSQLRS---ELREAKRMYEDKTEELEK 349
Cdd:COG4942 92 IAELRAELEAQKEELAELlRALYRlgrqpplalllspedfldavRRLQYLKYLAPARREqaeELRADLAELAALRAELEA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 112420968 350 QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
429-719 |
3.98e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 429 QRLEALLKALkSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK---VVEELTAKKMTLESSERTISDLTTSL 505
Cdd:TIGR01612 1125 QKIDHHIKAL-EEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKienIVTKIDKKKNIYDEIKKLLNEIAEIE 1203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvqtecealklqmtekdkvIEILRQQIENMTQLVGQHGRTA 585
Cdd:TIGR01612 1204 KDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHM--------------------IKAMEAYIEDLDEIKEKSPEIE 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 586 GAMQVEKaqlekeinDRRMELKELKILKDK-KDAKI--RELEARVSDLELEKVKLVNAGSERlRAVKDIKQERDQLLNEV 662
Cdd:TIGR01612 1264 NEMGIEM--------DIKAEMETFNISHDDdKDHHIisKKHDENISDIREKSLKIIEDFSEE-SDINDIKKELQKNLLDA 1334
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112420968 663 KTSRSE----LNNLSEEYEVLKRN-FRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSME 719
Cdd:TIGR01612 1335 QKHNSDinlyLNEIANIYNILKLNkIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIK 1396
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
336-836 |
4.34e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 336 AKRMYEDKTEELEKQLVLANSElTEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKRlwdrdtgnsiTID 415
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKKAE-EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKK----------KAD 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 416 HLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAKKMTLES 493
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKK 1412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 494 SErtiSDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnvQTECEALKLQMTEKDKVIEILRQQIEN 573
Cdd:PTZ00121 1413 AA---AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-------AKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRElEARVSDlELEKVKLVNAGSERLRAVKDIKQ 653
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKAD-EAKKAEEKKKADELKKAEELKKA 1560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 654 ERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEE-MEMTTNKLKMQLKSAQSElEQTRNTLKSMEGSDGHAMKVAMGM 732
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKA-EEAKIKAEELKKAEEEKKKVEQLK 1639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 733 QKQITAKRgqiDALQSKiqfLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVA 812
Cdd:PTZ00121 1640 KKEAEEKK---KAEELK---KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
|
490 500
....*....|....*....|....
gi 112420968 813 LDKASLQFAECQDIIQRQEQESVR 836
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKK 1737
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
295-663 |
5.05e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 295 NSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSE----------LREAKRMYEDKTEELEKQLVLANSELTEartE 364
Cdd:pfam10174 397 NVLQKKIENLQEQLRDKD----KQLAGLKERVKSLQTDssntdtalttLEEALSEKERIIERLKEQREREDRERLE---E 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 365 RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKalKSECQG 444
Cdd:pfam10174 470 LESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK--KAHNAE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 445 QMERQMAAIQGKNESLEKVSSLTAQlESTKEM--LRKVVEELTAKKMTLESSERTISDL--TTSLQEKERAIEATNAEIT 520
Cdd:pfam10174 548 EAVRTNPEINDRIRLLEQEVARYKE-ESGKAQaeVERLLGILREVENEKNDKDKKIAELesLTLRQMKEQNKKVANIKHG 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 521 KLRSRVDLKLQELQHLKNEGDHLRNVQtecealKLQMTEKDKVIEILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEIN 600
Cdd:pfam10174 627 QQEMKKKGAQLLEEARRREDNLADNSQ------QLQLEELMGALEKTRQELDATKARLSS---TQQSLAEKDGHLTNLRA 697
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112420968 601 DRRMELKElkILKDKKD---AKIRELEARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVK 663
Cdd:pfam10174 698 ERRKQLEE--ILEMKQEallAAISEKDANIALLELSSSKKKKTQEE----VMALKREKDRLVHQLK 757
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
592-832 |
5.10e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 40.86 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 592 KAQLEKEINDRRMELKELKILKD----KKDAKIRELEARVSDL---------ELEKVKLVNAGSERLRAvKDIKQERDQL 658
Cdd:pfam03528 24 KQQLEAEFNQKRAKFKELYLAKEedlkRQNAVLQEAQVELDALqnqlalaraEMENIKAVATVSENTKQ-EAIDEVKSQW 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 659 LNEVKTSRSELNNLSEEYEVL--------KRNFRNKSEEMEMTTNKLKMQLKSAQSElEQTRNTLKSMEGSDGHAMKVAM 730
Cdd:pfam03528 103 QEEVASLQAIMKETVREYEVQfhrrleqeRAQWNQYRESAEREIADLRRRLSEGQEE-ENLEDEMKKAQEDAEKLRSVVM 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 731 GMQKQITAKRGQIDALQSKIQFLEEamTNANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRL----- 802
Cdd:pfam03528 182 PMEKEIAALKAKLTEAEDKIKELEA--SKMKELNHYLEAEKScrtDLEMYVAVLNTQKSVLQEDAEKLRKELHEVchlle 259
|
250 260 270
....*....|....*....|....*....|..
gi 112420968 803 --KEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:pfam03528 260 qeRQQHNQLKHTWQKANDQFLESQRLLMRDMQ 291
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
306-655 |
5.88e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYeDKTEELEKQLVLA-----NSELTEARTERDQfSQESGNLDDQLQ 380
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGL-SALNRLLPRLNLLadetlADRVEEIREQLDE-AEEAKRFVQQHG 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 381 KLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSecqgQMERQMA-----AIQG 455
Cdd:PRK04863 918 NALAQLEPIVSVLQSDPEQ--------------FEQLKQDYQQAQQTQRDAKQQAFALTE----VVQRRAHfsyedAAEM 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTakkmtlessertisdlttslQEKERAIEAtNAEITKLRSRVDLKLQELQH 535
Cdd:PRK04863 980 LAKNSDLNEKLRQRLEQAEQERTRAREQLR--------------------QAQAQLAQY-NQVLASLKSSYDAKRQMLQE 1038
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 536 LKNEGDHLrNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDK 615
Cdd:PRK04863 1039 LKQELQDL-GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 112420968 616 KDAKIRelEARVSDLE--LEKVKLVNAGSERLRAVKDIKQER 655
Cdd:PRK04863 1118 WCAVLR--LVKDNGVErrLHRRELAYLSADELRSMSDKALGA 1157
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
322-728 |
6.27e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 322 LESTVSQLRSELREAKRMYEDKTEELEKQLVLanselTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSIL-----TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 402 RLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSEcqGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE--RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 482 EELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEALKLQMTEKD 561
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQA------RTVLKARTEAHFNNNEEV 770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 562 KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKirELEARVSDLElEKVKLVNAG 641
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLE-EKSATLGEI 847
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 642 SERLRAVKDIKQERDQLLNEVKTSRSELNNLsEEYEVLKRNFR-NKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
Cdd:TIGR00618 848 THQLLKYEECSKQLAQLTQEQAKIIQLSDKL-NGINQIKIQFDgDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVN 926
|
....*...
gi 112420968 721 SDGHAMKV 728
Cdd:TIGR00618 927 ARKYQGLA 934
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
269-488 |
6.57e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 269 IEQLISEHEVEITGLTEKASSARSQANSIQSQMEiiqeqarnqnsmyMRQLSDLESTVSQLRSELREAKRMYEDKTEELE 348
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE-------------EEEIRRLEEQVERLEAEVEELEAELEEKDERIE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 349 KqlvlANSELTEARTERDQfsqesgnlddqlqklladLHKREKELS-LEKEqnkrlwdrdtgnsitIDHLRRELDNRNME 427
Cdd:COG2433 445 R----LERELSEARSEERR------------------EIRKDREISrLDRE---------------IERLERELEEERER 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112420968 428 VQRLEALLKALKsecqgqmerQMAAIQGKNE--SLEKVSSLtaqlesTKEMLRKVVEELTAKK 488
Cdd:COG2433 488 IEELKRKLERLK---------ELWKLEHSGElvPVKVVEKF------TKEAIRRLEEEYGLKE 535
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
74-453 |
6.90e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 74 EHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamaDIRRRESQSQEDLRnQLQNTVHE 153
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELE-EAQEELEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 154 LEAakclKEDMLKDSNTQIEQLRKmmLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLHFRSLGSAIskILRELDTEI 233
Cdd:COG4717 225 LEE----ELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA--LLFLLLARE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLtEKASSARSQANSIQSQMEIIQEQARNQNS 313
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI-EELQELLREAEELEEELQLEELEQEIAAL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 314 MYMRQLSDLES---------TVSQLRSELREAKRMYEDKTEELEKQLVLANSEltEARTERDQFSQESGNLDDQLQKLLA 384
Cdd:COG4717 376 LAEAGVEDEEElraaleqaeEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELRE 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112420968 385 DLHKREKELSlEKEQNKRLWDRDTgnsiTIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAI 453
Cdd:COG4717 454 ELAELEAELE-QLEEDGELAELLQ----ELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
480-622 |
8.11e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 480 VVEEltAKKMTLESSERtISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTE 559
Cdd:PRK00409 503 IIEE--AKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK------LQEEEDKLLEEAEK 573
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112420968 560 K-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--KEINDRRMELKELKILKDKKDAKIRE 622
Cdd:PRK00409 574 EaQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
226-399 |
8.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 226 LRELDTEISYLKGRIFPVEDQLEALksesQNKIELLLQQHQDrIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQ 305
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDAL----QAELEELNEEYNE-LQAELEALQAEIDKLQAEIAEAEAE---IEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 306 EQARNQ------------------------NSMYMRQLSD----LESTVSQLRSELREAKRMYEDKTEELEKQLVLANSE 357
Cdd:COG3883 90 ERARALyrsggsvsyldvllgsesfsdfldRLSALSKIADadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 112420968 358 LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
345-441 |
8.35e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 345 EELEKQLVLANSELTEARTERDQFSQESgnlddqlqklLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNR 424
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFER----------LAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*..
gi 112420968 425 NMEVQRLEALLKALKSE 441
Cdd:COG0542 484 YGKIPELEKELAELEEE 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
589-817 |
8.65e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 589 QVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELekvkLVNAGSERLRAVKDIKQERDQLLNEVKTSRSE 668
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE----VLEEHEERREELETLEAEIEDLRETIAETERE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 669 LNNLSEEYEVLKRNFRNKSEEMEMTTNKLkmQLKSAQSE-LEQTRNTLksmEGSDGHAMKVAMGMQKQITAKRGQIDALQ 747
Cdd:PRK02224 274 REELAEEVRDLRERLEELEEERDDLLAEA--GLDDADAEaVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 748 SKIQFLEEAmtnaNKEKHflkEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKAS 817
Cdd:PRK02224 349 EDADDLEER----AEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
597-840 |
9.20e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 9.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 597 KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQ---LLNEVKTSRSELNNLS 673
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKShsiTLKEIERLSIEYNNAM 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 674 EEYEVLKRNFRNKSEEMEMtTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA--------------MGMQKQITAK 739
Cdd:PRK01156 232 DDYNNLKSALNELSSLEDM-KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIndpvyknrnyindyFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 740 RGQIDALQSKIQFLEEAMTNANKEKHF------LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVAL 813
Cdd:PRK01156 311 KQILSNIDAEINKYHAIIKKLSVLQKDyndyikKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMS 390
|
250 260
....*....|....*....|....*....
gi 112420968 814 DKAS--LQFAECQDIIQRQEQESVRLKLQ 840
Cdd:PRK01156 391 AFISeiLKIQEIDPDAIKKELNEINVKLQ 419
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
608-979 |
9.42e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.41 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 608 ELKILKDKKDAKIRELE----ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSrselnnlseEYE-VLKRN 682
Cdd:PTZ00108 1025 ELVITNAKKKDLVKELKklgyVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAV---------SYDyLLSMP 1095
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 683 FRNKSEEMemtTNKLKMQLKSAQSELEQTRNT-LKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
Cdd:PTZ00108 1096 IWSLTKEK---VEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKP 1172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 762 KEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEvaldKASLQFAECQDIIQRQEQESVRLKLQH 841
Cdd:PTZ00108 1173 KLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS----GSDQEDDEEQKTKPKKSSVKRLKSKKN 1248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112420968 842 TLDIKELQGPGYTSNSSLK----PRLLQPASVTRSHSNVPSSQSTASFLSHHSTKANTLKEDPTRDLKQLLqelrsvine 917
Cdd:PTZ00108 1249 NSSKSSEDNDEFSSDDLSKegkpKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLA--------- 1319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112420968 918 epAVSLSKTEEDGRTSLGALEDRVRDCITESSLR--SDMCHRSNNSLRDSTEGSKSSETLSREP 979
Cdd:PTZ00108 1320 --ALKKKKKSEKKTARKKKSKTRVKQASASQSSRllRRPRKKKSDSSSEDDDDSEVDDSEDEDD 1381
|
|
| |
