NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|112984108|ref|NP_001037729|]
View 

prostate-associated microseminoprotein precursor [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PSP94 super family cl05416
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 55-114 6.29e-03

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


The actual alignment was detected with superfamily member pfam05825:

Pssm-ID: 283482  Cd Length: 94  Bit Score: 34.14  E-value: 6.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112984108   55 LGESWLRKDCFHCTClHPVGVGCCDTSQHPIDFPAG-CEVRQEAGTCQFSLVQKSDPRLPC 114
Cdd:pfam05825  28 LNSVWKTKNCEWCTC-GKTAITCCTTAAIPVGYDKKkCQRIFHKENCTYSVVEKKNPGKTC 87
 
Name Accession Description Interval E-value
PSP94 pfam05825
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 55-114 6.29e-03

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


Pssm-ID: 283482  Cd Length: 94  Bit Score: 34.14  E-value: 6.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112984108   55 LGESWLRKDCFHCTClHPVGVGCCDTSQHPIDFPAG-CEVRQEAGTCQFSLVQKSDPRLPC 114
Cdd:pfam05825  28 LNSVWKTKNCEWCTC-GKTAITCCTTAAIPVGYDKKkCQRIFHKENCTYSVVEKKNPGKTC 87
 
Name Accession Description Interval E-value
PSP94 pfam05825
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 55-114 6.29e-03

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


Pssm-ID: 283482  Cd Length: 94  Bit Score: 34.14  E-value: 6.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112984108   55 LGESWLRKDCFHCTClHPVGVGCCDTSQHPIDFPAG-CEVRQEAGTCQFSLVQKSDPRLPC 114
Cdd:pfam05825  28 LNSVWKTKNCEWCTC-GKTAITCCTTAAIPVGYDKKkCQRIFHKENCTYSVVEKKNPGKTC 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH