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Conserved domains on  [gi|333470751|ref|NP_001073882|]
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homeobox protein NOBOX [Homo sapiens]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
273-361 1.55e-18

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.47  E-value: 1.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVWF 352
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVK--------------------------------VWF 48


                  ....*....
gi 333470751  353 QNRRAKWRK 361
Cdd:pfam00046  49 QNRRAKWKR 57
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 374-646 5.71e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 5.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  374 PAAPGPASSQCSSaaeilPAVPMEPKPDPFPQESPLD----TFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVR 449
Cdd:PHA03247 2720 PLPPGPAAARQAS-----PALPAAPAPPAVPAGPATPggpaRPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  450 RADLPFPLGPVHTPQLMPLLMDVAGSDSShkdgpcgswgTSITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQ 529
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAAS----------PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  530 SPQPKLP-YLPTFPFSMP-SSLTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILMQPPAGNIGTASWSDPCLPELPFP 607
Cdd:PHA03247 2865 RPPSRSPaAKPAAPARPPvRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 333470751  608 GPFCPQALGHPPGG--DGYFPDLFPTPCPQALGRQPSSALS 646
Cdd:PHA03247 2945 PTTDPAGAGEPSGAvpQPWLGALVPGRVAVPRFRVPQPAPS 2985
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
273-361 1.55e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.47  E-value: 1.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVWF 352
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVK--------------------------------VWF 48


                  ....*....
gi 333470751  353 QNRRAKWRK 361
Cdd:pfam00046  49 QNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 273-363 1.05e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.59  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVWF 352
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVK--------------------------------IWF 48

                         90
                 ....*....|.
gi 333470751 353 QNRRAKWRKME 363
Cdd:cd00086   49 QNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 272-360 5.63e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 72.28  E-value: 5.63e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751   272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVW 351
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVK--------------------------------VW 48


                   ....*....
gi 333470751   352 FQNRRAKWR 360
Cdd:smart00389  49 FQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
270-383 3.04e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 53.59  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 270 QIRKKTRTlyRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavaw 349
Cdd:COG5576   51 PKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQ-------------------------------- 96

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 333470751 350 VWFQNRRAKWRK-----MEKLNGKESKDNPAAPGPASSQ 383
Cdd:COG5576   97 IWFQNKRAKEKKkrsgkVEQRPGEEEADLAKIGSLSTGQ 135
PHA03247 PHA03247
large tegument protein UL36; Provisional
 374-646 5.71e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 5.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  374 PAAPGPASSQCSSaaeilPAVPMEPKPDPFPQESPLD----TFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVR 449
Cdd:PHA03247 2720 PLPPGPAAARQAS-----PALPAAPAPPAVPAGPATPggpaRPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  450 RADLPFPLGPVHTPQLMPLLMDVAGSDSShkdgpcgswgTSITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQ 529
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAAS----------PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  530 SPQPKLP-YLPTFPFSMP-SSLTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILMQPPAGNIGTASWSDPCLPELPFP 607
Cdd:PHA03247 2865 RPPSRSPaAKPAAPARPPvRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 333470751  608 GPFCPQALGHPPGG--DGYFPDLFPTPCPQALGRQPSSALS 646
Cdd:PHA03247 2945 PTTDPAGAGEPSGAvpQPWLGALVPGRVAVPRFRVPQPAPS 2985
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 500-674 1.84e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.56  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  500 LEELEPQDYQQSNQPGPFQFSQAPQPPlfqSPQPKLPYLPTFPFSMPSSLTLPPPEDslfmfPCGPSGGTSQGYCPgass 579
Cdd:pfam09770 196 LEEVEAAMRAQAKKPAQQPAPAPAQPP---AAPPAQQAQQQQQFPPQIQQQQQPQQQ-----PQQPQQHPGQGHPV---- 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  580 gQILMQP----PAGNIGTASWSDPCLPELPFPGPFCP-QALGHPP-------GGDGYFPDLFPTPCPQALGRQPSSALSW 647
Cdd:pfam09770 264 -TILQRPqspqPDPAQPSIQPQAQQFHQQPPPVPVQPtQILQNPNrlsaarvGYPQNPQPGVQPAPAHQAHRQQGSFGRQ 342

                         170       180
                  ....*....|....*....|....*..
gi 333470751  648 MPEGARPgtgPLLSKAKEEPPAASLDQ 674
Cdd:pfam09770 343 APIITHP---QQLAQLSEEEKAAYLDE 366
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
273-361 1.55e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.47  E-value: 1.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVWF 352
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVK--------------------------------VWF 48


                  ....*....
gi 333470751  353 QNRRAKWRK 361
Cdd:pfam00046  49 QNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 273-363 1.05e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.59  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVWF 352
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVK--------------------------------IWF 48

                         90
                 ....*....|.
gi 333470751 353 QNRRAKWRKME 363
Cdd:cd00086   49 QNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 272-360 5.63e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 72.28  E-value: 5.63e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751   272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavawVW 351
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVK--------------------------------VW 48


                   ....*....
gi 333470751   352 FQNRRAKWR 360
Cdd:smart00389  49 FQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
270-383 3.04e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 53.59  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 270 QIRKKTRTlyRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMvkgagslvagwsgggptietlelqsersavaw 349
Cdd:COG5576   51 PKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQ-------------------------------- 96

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 333470751 350 VWFQNRRAKWRK-----MEKLNGKESKDNPAAPGPASSQ 383
Cdd:COG5576   97 IWFQNKRAKEKKkrsgkVEQRPGEEEADLAKIGSLSTGQ 135
PHA03247 PHA03247
large tegument protein UL36; Provisional
 374-646 5.71e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 5.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  374 PAAPGPASSQCSSaaeilPAVPMEPKPDPFPQESPLD----TFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVR 449
Cdd:PHA03247 2720 PLPPGPAAARQAS-----PALPAAPAPPAVPAGPATPggpaRPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  450 RADLPFPLGPVHTPQLMPLLMDVAGSDSShkdgpcgswgTSITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQ 529
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAAS----------PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  530 SPQPKLP-YLPTFPFSMP-SSLTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILMQPPAGNIGTASWSDPCLPELPFP 607
Cdd:PHA03247 2865 RPPSRSPaAKPAAPARPPvRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 333470751  608 GPFCPQALGHPPGG--DGYFPDLFPTPCPQALGRQPSSALS 646
Cdd:PHA03247 2945 PTTDPAGAGEPSGAvpQPWLGALVPGRVAVPRFRVPQPAPS 2985
PHA03247 PHA03247
large tegument protein UL36; Provisional
 374-618 2.93e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  374 PAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADL 453
Cdd:PHA03247 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  454 PFPLGPVHTPqlMPLLMDVAGSDSSHKDGPCGSWGTSITLP--PPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQSP 531
Cdd:PHA03247 2840 PPPPGPPPPS--LPLGGSVAPGGDVRRRPPSRSPAAKPAAParPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  532 QPKlPYLPTFPFSMPSSLTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILmqpPAGNIGTASWSDPCLPELPFPGPFC 611
Cdd:PHA03247 2918 QPQ-PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALV---PGRVAVPRFRVPQPAPSREAPASST 2993


                  ....*..
gi 333470751  612 PQALGHP 618
Cdd:PHA03247 2994 PPLTGHS 3000
PHA03247 PHA03247
large tegument protein UL36; Provisional
 374-683 2.06e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  374 PAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQPSE--------GAQRVVTPPLFSP 445
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVpagpatpgGPARPARPPTTAG 2765

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  446 PPVRRAdlpfPLGPVHTPQLMPLLMDVAGSDSSHKDGPCGSWGTSITLPPPcsyleelepqdyqqsnqpgpfqfSQAPQP 525
Cdd:PHA03247 2766 PPAPAP----PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL-----------------------APAAAL 2818

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  526 PLFQSPQPKLPyLPTFPFSMPSSLTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILMQPPagNIGTASWSDPCLPELP 605
Cdd:PHA03247 2819 PPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA--RPPVRRLARPAVSRST 2895

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 333470751  606 FPGPFCPQALGHPPGgdgyfPDLFPTPCPQALGRQPSSALSWMPEGARPgtgpllskakeEPPAASLDQPSALEEARG 683
Cdd:PHA03247 2896 ESFALPPDQPERPPQ-----PQAPPPPQPQPQPPPPPQPQPPPPPPPRP-----------QPPLAPTTDPAGAGEPSG 2957
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 500-674 1.84e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.56  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  500 LEELEPQDYQQSNQPGPFQFSQAPQPPlfqSPQPKLPYLPTFPFSMPSSLTLPPPEDslfmfPCGPSGGTSQGYCPgass 579
Cdd:pfam09770 196 LEEVEAAMRAQAKKPAQQPAPAPAQPP---AAPPAQQAQQQQQFPPQIQQQQQPQQQ-----PQQPQQHPGQGHPV---- 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751  580 gQILMQP----PAGNIGTASWSDPCLPELPFPGPFCP-QALGHPP-------GGDGYFPDLFPTPCPQALGRQPSSALSW 647
Cdd:pfam09770 264 -TILQRPqspqPDPAQPSIQPQAQQFHQQPPPVPVQPtQILQNPNrlsaarvGYPQNPQPGVQPAPAHQAHRQQGSFGRQ 342

                         170       180
                  ....*....|....*....|....*..
gi 333470751  648 MPEGARPgtgPLLSKAKEEPPAASLDQ 674
Cdd:pfam09770 343 APIITHP---QQLAQLSEEEKAAYLDE 366
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 369-562 1.98e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 369 ESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQT-LAPTQPSEGAQRVVTPPLFSPPP 447
Cdd:PTZ00449 580 EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRpPPPQRPSSPERPEGPKIIKSPKP 659

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333470751 448 VRRADLPFplgpvhTPQLMPLLMDvagsdsSHKDGPCGSWGTSITLPPPCSYLEELEPQdyqQSNQPGPFQFSQAPQPPl 527
Cdd:PTZ00449 660 PKSPKPPF------DPKFKEKFYD------DYLDAAAKSKETKTTVVLDESFESILKET---LPETPGTPFTTPRPLPP- 723

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 333470751 528 fqspqpKLPYLPTFPFSMPSSLTLPPPEDSLFMFP 562
Cdd:PTZ00449 724 ------KLPRDEEFPFEPIGDPDAEQPDDIEFFTP 752
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 374-447 2.35e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.95  E-value: 2.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 333470751 374 PAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQtlAPTQPSEGAQRVVTPPLFSPPP 447
Cdd:PRK14950 378 PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES--APKLTRAAIPVDEKPKYTPPAP 449
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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