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Conserved domains on  [gi|154426266|ref|NP_001093889|]
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required for excision 1-B domain-containing protein isoform 2 [Homo sapiens]

Protein Classification

DNA_repr_REX1B domain-containing protein( domain architecture ID 10633158)

DNA_repr_REX1B domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNA_repr_REX1B pfam14966
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 41-136 1.71e-27

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


:

Pssm-ID: 434355  Cd Length: 94  Bit Score: 98.84  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154426266   41 LVQRIHQLQAERAQGFRRLEEGHRQYLRSGPDYDfarYRSTVHGVTQAFAAASREVLAVEAELGGPRRqPLLAGHVRSLQ 120
Cdd:pfam14966   2 LLRRFLELQEERAAAYRRFEEGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDPGR-PDLAELIRKLQ 77

                          90
                  ....*....|....*.
gi 154426266  121 ELEQTRLGTVALLQLM 136
Cdd:pfam14966  78 EQEKEKLELTAKLQVL 93
 
Name Accession Description Interval E-value
DNA_repr_REX1B pfam14966
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 41-136 1.71e-27

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


Pssm-ID: 434355  Cd Length: 94  Bit Score: 98.84  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154426266   41 LVQRIHQLQAERAQGFRRLEEGHRQYLRSGPDYDfarYRSTVHGVTQAFAAASREVLAVEAELGGPRRqPLLAGHVRSLQ 120
Cdd:pfam14966   2 LLRRFLELQEERAAAYRRFEEGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDPGR-PDLAELIRKLQ 77

                          90
                  ....*....|....*.
gi 154426266  121 ELEQTRLGTVALLQLM 136
Cdd:pfam14966  78 EQEKEKLELTAKLQVL 93
 
Name Accession Description Interval E-value
DNA_repr_REX1B pfam14966
DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required ...
 41-136 1.71e-27

DNA repair REX1-B; This family of proteins includes Chlamydomonas reinhardtii REX1-B (Required for Excision 1-B) which is involved in a light-independent DNA repair pathway.


Pssm-ID: 434355  Cd Length: 94  Bit Score: 98.84  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154426266   41 LVQRIHQLQAERAQGFRRLEEGHRQYLRSGPDYDfarYRSTVHGVTQAFAAASREVLAVEAELGGPRRqPLLAGHVRSLQ 120
Cdd:pfam14966   2 LLRRFLELQEERAAAYRRFEEGFKAYLRTGPEYD---YRQLCHEITEEFSSISKEILAIEAALRDPGR-PDLAELIRKLQ 77

                          90
                  ....*....|....*.
gi 154426266  121 ELEQTRLGTVALLQLM 136
Cdd:pfam14966  78 EQEKEKLELTAKLQVL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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