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Conserved domains on  [gi|210032112|ref|NP_001129702|]
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17-beta-hydroxysteroid dehydrogenase 13 isoform B [Homo sapiens]

Protein Classification

SDR family oxidoreductase( domain architecture ID 10143197)

classical SDR (short-chain dehydrogenase/reductase) family NAD(P)-dependent oxidoreductase may catalyze isomerization, decarboxylation, epimerization, C=N bond reduction, dehydration, dehalogenation, enoyl-CoA reduction, and/or carbonyl-alcohol oxidoreduction; classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue

CATH:  3.40.50.720
EC:  1.-.-.-
Gene Ontology:  GO:0016491

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
17beta-HSDXI-like_SDR_c cd05339
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid ...
38-241 1.68e-91

human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


:

Pssm-ID: 187598 [Multi-domain]  Cd Length: 243  Bit Score: 270.27  E-value: 1.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTIV 81
Cdd:cd05339    1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINekgaeetannvrkaggkvhyykcdvskreevyeaakKIKKEVGDVTIL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05339   81 INNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTTKAFLPDMLERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 162 GLTSELQALGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLP 238
Cdd:cd05339  161 SLRLELKAYGKPGIKTTLVCPYFINTGMFQGVKTPrplLAPILEPEYVAEKIVRAILTNQQMLYLPFYAYFLPILKRTLP 240

                 ...
gi 210032112 239 ERA 241
Cdd:cd05339  241 TPV 243
 
Name Accession Description Interval E-value
17beta-HSDXI-like_SDR_c cd05339
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid ...
38-241 1.68e-91

human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187598 [Multi-domain]  Cd Length: 243  Bit Score: 270.27  E-value: 1.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTIV 81
Cdd:cd05339    1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINekgaeetannvrkaggkvhyykcdvskreevyeaakKIKKEVGDVTIL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05339   81 INNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTTKAFLPDMLERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 162 GLTSELQALGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLP 238
Cdd:cd05339  161 SLRLELKAYGKPGIKTTLVCPYFINTGMFQGVKTPrplLAPILEPEYVAEKIVRAILTNQQMLYLPFYAYFLPILKRTLP 240

                 ...
gi 210032112 239 ERA 241
Cdd:cd05339  241 TPV 243
YqjQ COG0300
Short-chain dehydrogenase [General function prediction only];
33-249 5.45e-55

Short-chain dehydrogenase [General function prediction only];


Pssm-ID: 440069 [Multi-domain]  Cd Length: 252  Bit Score: 177.37  E-value: 5.45e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVG 76
Cdd:COG0300    2 SLTGKTVLITGASSGIGRALARALAARGARVVLVARDaerlealaaelraagarvevvaldvtdpdavaalaeAVLARFG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:COG0300   82 PIDVLVNNAGVGGGGPFEELDLEDLRRVFEVNVFGPVRLTRALLPLMRARGRGRIVNVSSVAGLRGLPGMAAYAASKAAL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 157 VGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRLW-PVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQK 235
Cdd:COG0300  162 EGFSESLRAELA---PTGVRVTAVCPGPVDTPFTARAGAPAGrPLLSPEEVARAILRALERGRAEVYVGWDARLLARLLR 238
                        250
                 ....*....|....
gi 210032112 236 FLPERASAILNRMQ 249
Cdd:COG0300  239 LLPRLFDRLLRRAL 252
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
37-192 4.34e-39

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 134.66  E-value: 4.34e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   37 EIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTI 80
Cdd:pfam00106   1 KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSeekleavakelgalggkalfiqgdvtdraqvkalveQAVERLGRLDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:pfam00106  81 LVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFT 160
                         170       180       190
                  ....*....|....*....|....*....|..
gi 210032112  161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:pfam00106 161 RSLALE---LAPHGIRVNAVAPGGVDTDMTKE 189
PRK07825 PRK07825
short chain dehydrogenase; Provisional
33-247 2.81e-38

short chain dehydrogenase; Provisional


Pssm-ID: 181136 [Multi-domain]  Cd Length: 273  Bit Score: 135.07  E-value: 2.81e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK-KEVG-----------DVT--------------------I 80
Cdd:PRK07825   2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALaKETAaelglvvggplDVTdpasfaafldaveadlgpidV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:PRK07825  82 LVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN-PSTRLWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLPE 239
Cdd:PRK07825 162 DAARLE---LRGTGVHVSVVLPSFVNTELIAGtGGAKGFKNVEPEDVAAAIVGTVAKPRPEVRVPRALGPLAQAQRLLPR 238

                 ....*...
gi 210032112 240 RASAILNR 247
Cdd:PRK07825 239 RVREALNR 246
 
Name Accession Description Interval E-value
17beta-HSDXI-like_SDR_c cd05339
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid ...
38-241 1.68e-91

human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187598 [Multi-domain]  Cd Length: 243  Bit Score: 270.27  E-value: 1.68e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTIV 81
Cdd:cd05339    1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINekgaeetannvrkaggkvhyykcdvskreevyeaakKIKKEVGDVTIL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05339   81 INNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTTKAFLPDMLERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 162 GLTSELQALGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLP 238
Cdd:cd05339  161 SLRLELKAYGKPGIKTTLVCPYFINTGMFQGVKTPrplLAPILEPEYVAEKIVRAILTNQQMLYLPFYAYFLPILKRTLP 240

                 ...
gi 210032112 239 ERA 241
Cdd:cd05339  241 TPV 243
YqjQ COG0300
Short-chain dehydrogenase [General function prediction only];
33-249 5.45e-55

Short-chain dehydrogenase [General function prediction only];


Pssm-ID: 440069 [Multi-domain]  Cd Length: 252  Bit Score: 177.37  E-value: 5.45e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVG 76
Cdd:COG0300    2 SLTGKTVLITGASSGIGRALARALAARGARVVLVARDaerlealaaelraagarvevvaldvtdpdavaalaeAVLARFG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:COG0300   82 PIDVLVNNAGVGGGGPFEELDLEDLRRVFEVNVFGPVRLTRALLPLMRARGRGRIVNVSSVAGLRGLPGMAAYAASKAAL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 157 VGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRLW-PVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQK 235
Cdd:COG0300  162 EGFSESLRAELA---PTGVRVTAVCPGPVDTPFTARAGAPAGrPLLSPEEVARAILRALERGRAEVYVGWDARLLARLLR 238
                        250
                 ....*....|....
gi 210032112 236 FLPERASAILNRMQ 249
Cdd:COG0300  239 LLPRLFDRLLRRAL 252
SDR_c cd05233
classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a ...
39-192 5.42e-46

classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212491 [Multi-domain]  Cd Length: 234  Bit Score: 153.98  E-value: 5.42e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----------------------------------KVKKEVGDVTIVVN 83
Cdd:cd05233    1 ALVTGASSGIGRAIARRLAREGAKVVLADRNeealaelaaiealggnavavqadvsdeedvealveEALEEFGRLDILVN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGL 163
Cdd:cd05233   81 NAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAALPHMKKQGGGRIVNISSVAGLRPLPGQAAYAASKAALEGLTRSL 160
                        170       180
                 ....*....|....*....|....*....
gi 210032112 164 TSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:cd05233  161 ALE---LAPYGIRVNAVAPGLVDTPMLAK 186
YdfG COG4221
NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; ...
33-192 3.05e-43

NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; NADP-dependent 3-hydroxy acid dehydrogenase YdfG is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 443365 [Multi-domain]  Cd Length: 240  Bit Score: 146.87  E-value: 3.05e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG--------DVT-------------------- 79
Cdd:COG4221    2 SDKGKVALITGASSGIGAATARALAAAGARVVLAARRaerleALAAELGgralavplDVTdeaaveaavaaavaefgrld 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:COG4221   82 VLVNNAGVALLGPLEELDPEDWDRMIDVNVKGVLYVTRAALPAMRARGSGHIVNISSIAGLRPYPGGAVYAATKAAVRGL 161
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:COG4221  162 SESLRAE---LRPTGIRVTVIEPGAVDTEFLDS 191
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
35-214 9.37e-40

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 137.99  E-value: 9.37e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDV 78
Cdd:COG1028    5 KGKVALVTGGSSGIGRAIARALAAEGARVVITDRDaealeaaaaelraaggralavaadvtdeaavealvaAAVAAFGRL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:COG1028   85 DILVNNAGITPPGPLEELTEEDWDRVLDVNLKGPFLLTRAALPHMRERGGGRIVNISSIAGLRGSPGQAAYAASKAAVVG 164
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNpstrlwpVLETDEVVRSLIDGI 214
Cdd:COG1028  165 LTRSLALE---LAPRGIRVNAVAPGPIDTPMTRA-------LLGAEEVREALAARI 210
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
37-192 4.34e-39

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 134.66  E-value: 4.34e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   37 EIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTI 80
Cdd:pfam00106   1 KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSeekleavakelgalggkalfiqgdvtdraqvkalveQAVERLGRLDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:pfam00106  81 LVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFT 160
                         170       180       190
                  ....*....|....*....|....*....|..
gi 210032112  161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:pfam00106 161 RSLALE---LAPHGIRVNAVAPGGVDTDMTKE 189
PRK07825 PRK07825
short chain dehydrogenase; Provisional
33-247 2.81e-38

short chain dehydrogenase; Provisional


Pssm-ID: 181136 [Multi-domain]  Cd Length: 273  Bit Score: 135.07  E-value: 2.81e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK-KEVG-----------DVT--------------------I 80
Cdd:PRK07825   2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALaKETAaelglvvggplDVTdpasfaafldaveadlgpidV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:PRK07825  82 LVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN-PSTRLWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLPE 239
Cdd:PRK07825 162 DAARLE---LRGTGVHVSVVLPSFVNTELIAGtGGAKGFKNVEPEDVAAAIVGTVAKPRPEVRVPRALGPLAQAQRLLPR 238

                 ....*...
gi 210032112 240 RASAILNR 247
Cdd:PRK07825 239 RVREALNR 246
11beta-HSD1_like_SDR_c cd05332
11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human ...
34-239 1.29e-37

11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187593 [Multi-domain]  Cd Length: 257  Bit Score: 132.71  E-value: 1.29e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKRQSILVL----WD-INKVKKEV------------GDVT----------------- 79
Cdd:cd05332    1 LQGKVVIITGASSGIGEELAYHLARLGARLVLsarrEErLEEVKSEClelgapsphvvpLDMSdledaeqvveealklfg 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ---IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:cd05332   81 gldILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALTKAALPHLIERSQGSIVVVSSIAGKIGVPFRTAYAASKHAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 157 VGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPST----RLWPVLE-------TDEVVRSLIDGILTNKKMIFVPS 225
Cdd:cd05332  161 QGFFDSLRAELS---EPNISVTVVCPGLIDTNIAMNALSgdgsMSAKMDDttangmsPEECALEILKAIALRKREVFYAR 237
                        250
                 ....*....|....*
gi 210032112 226 Y-INIFLRLQKFLPE 239
Cdd:cd05332  238 QvPLLAVYLRQLFPG 252
17beta-HSD-like_SDR_c cd05374
17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid ...
38-205 9.06e-35

17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187632 [Multi-domain]  Cd Length: 248  Bit Score: 125.04  E-value: 9.06e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKR--------------QSILVLWD---------------INKVKKEV----GDVTIVVNN 84
Cdd:cd05374    2 VVLITGCSSGIGLALALALAAQgyrviatarnpdklESLGELLNdnlevleldvtdeesIKAAVKEVierfGRIDVLVNN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  85 AGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLT 164
Cdd:cd05374   82 AGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFLPLMRKQGSGRIVNVSSVAGLVPTPFLGPYCASKAALEALSESLR 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 210032112 165 SELQALgktGIKTSCLCPVFVNTGFTKNPSTRLWPVLETDE 205
Cdd:cd05374  162 LELAPF---GIKVTIIEPGPVRTGFADNAAGSALEDPEISP 199
HetN_like_SDR_c cd08932
HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC ...
38-187 9.44e-27

HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212493 [Multi-domain]  Cd Length: 223  Bit Score: 103.60  E-value: 9.44e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVL--------------------------------WDINKVKKEVGDVTIVVNNA 85
Cdd:cd08932    2 VALVTGASRGIGIEIARALARDGYRVSLglrnpedlaalsasggdveavpydardpedarALVDALRDRFGRIDVLVHNA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  86 GTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTs 165
Cdd:cd08932   82 GIGRPTTLREGSDAELEAHFSINVIAPAELTRALLPALREAGSGRVVFLNSLSGKRVLAGNAGYSASKFALRALAHALR- 160
                        170       180
                 ....*....|....*....|..
gi 210032112 166 elQALGKTGIKTSCLCPVFVNT 187
Cdd:cd08932  161 --QEGWDHGVRVSAVCPGFVDT 180
fabG PRK07666
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
33-192 1.93e-26

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236074 [Multi-domain]  Cd Length: 239  Bit Score: 103.23  E-value: 1.93e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKR--------------------------QSILVLWD----------INKVKKEVG 76
Cdd:PRK07666   4 SLQGKNALITGAGRGIGRAVAIALAKEgvnvgllarteenlkavaeeveaygvKVVIATADvsdyeevtaaIEQLKNELG 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK07666  84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGV 163
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 210032112 157 VGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKN 192
Cdd:PRK07666 164 LGLTESLMQEVR---KHNIRVTALTPSTVATDMAVD 196
FabG-like PRK07231
SDR family oxidoreductase;
32-191 3.21e-26

SDR family oxidoreductase;


Pssm-ID: 235975 [Multi-domain]  Cd Length: 251  Bit Score: 102.60  E-value: 3.21e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----------------------------------VKKEVG 76
Cdd:PRK07231   1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEeaaervaaeilaggraiavaadvsdeadveaavaaALERFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPAD-LLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKfA 155
Cdd:PRK07231  81 SVDILVNNAGTTHRNGpLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASK-G 159
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 156 AVgfhRGLTSELQA-LGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK07231 160 AV---ITLTKALAAeLGPDKIRVNAVAPVVVETGLLE 193
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
32-198 5.50e-26

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 102.16  E-value: 5.50e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKE-----------VGDVT---------------- 79
Cdd:PRK05653   1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNeeaaeALAAElraaggearvlVFDVSdeaavralieaaveaf 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ----IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK05653  81 galdILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAG 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 210032112 156 AVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPSTRLW 198
Cdd:PRK05653 161 VIGFTKALALE---LASRGITVNAVAPGFIDTDMTEGLPEEVK 200
PRK12826 PRK12826
SDR family oxidoreductase;
31-199 1.09e-25

SDR family oxidoreductase;


Pssm-ID: 183775 [Multi-domain]  Cd Length: 251  Bit Score: 101.53  E-value: 1.09e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN----------------KVKKEVGDVT--------------- 79
Cdd:PRK12826   1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICgddaaataelveaaggKARARQVDVRdraalkaavaagved 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 -----IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG-HEGIPYLIPYCSSK 153
Cdd:PRK12826  81 fgrldILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGpRVGYPGLAHYAASK 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPSTRLWP 199
Cdd:PRK12826 161 AGLVGFTRALALE---LAARNITVNSVHPGGVDTPMAGNLGDAQWA 203
SDR_c6 cd05350
classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a ...
39-240 2.01e-25

classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187608 [Multi-domain]  Cd Length: 239  Bit Score: 100.48  E-value: 2.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVL--------------------------WDIN----------KVKKEVGDVTIVV 82
Cdd:cd05350    1 VLITGASSGIGRALAREFAKAGYNVALaarrtdrldelkaellnpnpsveveiLDVTdeernqlviaELEAELGGLDLVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRG 162
Cdd:cd05350   81 INAGVGKGTSLGDLSFKAFRETIDTNLLGAAAILEAALPQFRAKGRGHLVLISSVAALRGLPGAAAYSASKAALSSLAES 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 210032112 163 LTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRLWpVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLPER 240
Cdd:cd05350  161 LRYDVK---KRGIRVTVINPGFIDTPLTANMFTMPF-LMSVEQAAKRIYKAIKKGAAEPTFPWRLAVPLRLLKLLPER 234
BKR_SDR_c cd05333
beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; ...
37-194 2.56e-25

beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187594 [Multi-domain]  Cd Length: 240  Bit Score: 99.93  E-value: 2.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTI 80
Cdd:cd05333    1 KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSeeaaaetveeikalggnaaaleadvsdreavealveKVEAEFGPVDI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:cd05333   81 LVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQAVIRAMIKRRSGRIINISSVVGLIGNPGQANYAASKAGVIGFT 160
                        170       180       190
                 ....*....|....*....|....*....|....
gi 210032112 161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPS 194
Cdd:cd05333  161 KSLAKE---LASRGITVNAVAPGFIDTDMTDALP 191
DHRS6_like_SDR_c cd05368
human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are ...
35-196 3.88e-24

human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).


Pssm-ID: 187626 [Multi-domain]  Cd Length: 241  Bit Score: 97.15  E-value: 3.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK---------------------------KEVGDVTIVVNNAGT 87
Cdd:cd05368    1 DGKVALITAAAQGIGRAIALAFAREGANVIATDINEEKlkelergpgittrvldvtdkeqvaalaKEEGRIDVLFNCAGF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  88 VYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGH-EGIPYLIPYCSSKFAAVGFHRGLTSE 166
Cdd:cd05368   81 VHHGSILDCEDDDWDFAMNLNVRSMYLMIKAVLPKMLARKDGSIINMSSVASSiKGVPNRFVYSTTKAAVIGLTKSVAAD 160
                        170       180       190
                 ....*....|....*....|....*....|
gi 210032112 167 lqaLGKTGIKTSCLCPVFVNTgftknPSTR 196
Cdd:cd05368  161 ---FAQQGIRCNAICPGTVDT-----PSLE 182
SDR_c5 cd05346
classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a ...
38-190 6.81e-24

classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187604 [Multi-domain]  Cd Length: 249  Bit Score: 96.58  E-value: 6.81e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVL---------------------------WD----------INKVKKEVGDVTI 80
Cdd:cd05346    2 TVLITGASSGIGEATARRFAKAGAKLILtgrraerlqeladelgakfpvkvlplqLDvsdresieaaLENLPEEFRDIDI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEE-ITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:cd05346   82 LVNNAGLALGLDPAQEADLEdWETMIDTNVKGLLNVTRLILPIMIARNQGHIINLGSIAGRYPYAGGNVYCATKAAVRQF 161
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 160 HRGLTSELQAlgkTGIKTSCLCPVFVNTGFT 190
Cdd:cd05346  162 SLNLRKDLIG---TGIRVTNIEPGLVETEFS 189
fabG PRK05557
3-ketoacyl-(acyl-carrier-protein) reductase; Validated
36-214 4.99e-23

3-ketoacyl-(acyl-carrier-protein) reductase; Validated


Pssm-ID: 235500 [Multi-domain]  Cd Length: 248  Bit Score: 94.10  E-value: 4.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVL--------------------------------WD-----INKVKKEVGDV 78
Cdd:PRK05557   5 GKVALVTGASRGIGRAIAERLAAQGANVVInyasseagaealvaeigalggkalavqgdvsdAEsveraVDEAKAEFGGV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK05557  85 DILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVIG 164
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPvfvntGFTKNPSTRLWPvletDEVVRSLIDGI 214
Cdd:PRK05557 165 FTKSLARE---LASRGITVNAVAP-----GFIETDMTDALP----EDVKEAILAQI 208
KDSR-like_SDR_c cd08939
3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These ...
36-222 7.30e-23

3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187643 [Multi-domain]  Cd Length: 239  Bit Score: 93.47  E-value: 7.30e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKR--QSILVLWDINKVKKEV-------------------------------------- 75
Cdd:cd08939    1 GKHVLITGGSSGIGKALAKELVKEgaNVIIVARSESKLEEAVeeieaeanasgqkvsyisadlsdyeeveqafaqavekg 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:cd08939   81 GPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNVAHAVLPLMKEQRPGHIVFVSSQAALVGIYGYSAYCPSKFA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 210032112 156 AvgfhRGLTSELQA-LGKTGIKTSCLCPVFVNT-GF-----TKNPSTRLW----PVLETDEVVRSLIDGILTNKKMIF 222
Cdd:cd08939  161 L----RGLAESLRQeLKPYNIRVSVVYPPDTDTpGFeeenkTKPEETKAIegssGPITPEEAARIIVKGLDRGYDDVF 234
PRK05855 PRK05855
SDR family oxidoreductase;
31-196 1.64e-22

SDR family oxidoreductase;


Pssm-ID: 235628 [Multi-domain]  Cd Length: 582  Bit Score: 96.20  E-value: 1.64e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKE 74
Cdd:PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDeaaaertaeliraagavahayrvdvsdadameafaeWVRAE 389
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  75 VGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTgGHIVNVASAAAYAPSRSLPAYATSK 469
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 210032112 154 FAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKnpSTR 196
Cdd:PRK05855 470 AAVLMLSECLRAELAA---AGIGVTAICPGFVDTNIVA--TTR 507
fabG PRK12825
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
33-187 1.91e-22

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237218 [Multi-domain]  Cd Length: 249  Bit Score: 92.62  E-value: 1.91e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTT---------------------------YEFAKRQSILVLWDINK----------VKKEV 75
Cdd:PRK12825   3 SLMGRVALVTGAARGLGRAIAlrlaragadvvvhyrsdeeaaeelveaVEALGRRAQAVQADVTDkaaleaavaaAVERF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK12825  83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAG 162
                        170       180       190
                 ....*....|....*....|....*....|..
gi 210032112 156 AVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12825 163 LVGLTKALARE---LAEYGITVNMVAPGDIDT 191
ADH_SDR_c_like cd05323
insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains ...
39-211 2.22e-22

insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187584 [Multi-domain]  Cd Length: 244  Bit Score: 92.36  E-value: 2.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVTIVV 82
Cdd:cd05323    3 AIITGGASGIGLATAKLLLKKGAKVAILDRNenpgaaaelqainpkvkatfvqcdvtsweqlaaafkKAIEKFGRVDILI 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEE--ITKTFEVNILGHFWITKALLPSMMERNHGH---IVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd05323   83 NNAGILDEKSYLFAGKLPppWEKTIDVNLTGVINTTYLALHYMDKNKGGKggvIVNIGSVAGLYPAPQFPVYSASKHGVV 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 158 GFHRGLTSELqaLGKTGIKTSCLCPVFVNT----GFTKNPSTRL--WPVLETDEVVRSLI 211
Cdd:cd05323  163 GFTRSLADLL--EYKTGVRVNAICPGFTNTpllpDLVAKEAEMLpsAPTQSPEVVAKAIV 220
SDR_c3 cd05360
classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a ...
38-189 2.63e-22

classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187618 [Multi-domain]  Cd Length: 233  Bit Score: 92.06  E-value: 2.63e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEV----GDVTIV--------------------------- 81
Cdd:cd05360    2 VVVITGASSGIGRATALAFAERGAKVVLAARSAealheLAREVrelgGEAIAVvadvadaaqveraadtaverfgridtw 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05360   82 VNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTLAALPHLRRRGGGALINVGSLLGYRSAPLQAAYSASKHAVRGFTE 161
                        170       180
                 ....*....|....*....|....*...
gi 210032112 162 GLTSELQALGKTgIKTSCLCPVFVNTGF 189
Cdd:cd05360  162 SLRAELAHDGAP-ISVTLVQPTAMNTPF 188
Mgc4172-like_SDR_c cd05343
human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These ...
36-189 4.28e-22

human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187601 [Multi-domain]  Cd Length: 250  Bit Score: 91.81  E-value: 4.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK---------------------------------------RQSILVLWdiNKVKKEVG 76
Cdd:cd05343    6 GRVALVTGASVGIGAAVARALVQhgmkvvgcarrvdkiealaaecqsagyptlfpyqcdlsnEEQILSMF--SAIRTQHQ 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN--HGHIVTVASVCGHEGIP--YLIPYCSS 152
Cdd:cd05343   84 GVDVCINNAGLARPEPLLSGKTEGWKEMFDVNVLALSICTREAYQSMKERNvdDGHIININSMSGHRVPPvsVFHFYAAT 163
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 153 KFAAVGFHRGLTSELQALgKTGIKTSCLCPVFVNTGF 189
Cdd:cd05343  164 KHAVTALTEGLRQELREA-KTHIRATSISPGLVETEF 199
PRK06914 PRK06914
SDR family oxidoreductase;
35-171 6.30e-22

SDR family oxidoreductase;


Pssm-ID: 180744 [Multi-domain]  Cd Length: 280  Bit Score: 92.01  E-value: 6.30e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILV----------LWDINKVKKEVGD 77
Cdd:PRK06914   2 NKKIAIVTGASSGFGLLTTLELAKKgylviatmrnpekqenllsqatqlnlqQNIKVqqldvtdqnsIHNFQLVLKEIGR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK06914  82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYALE 161
                        170
                 ....*....|....
gi 210032112 158 GFHRGLTSELQALG 171
Cdd:PRK06914 162 GFSESLRLELKPFG 175
SDR_c1 cd05355
classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a ...
36-182 1.43e-21

classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187613 [Multi-domain]  Cd Length: 270  Bit Score: 90.81  E-value: 1.43e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK----------------------------RQSILVLWDI----------NKVKKEVGD 77
Cdd:cd05355   26 GKKALITGGDSGIGRAVAIAFARegadvainylpeeeddaeetkklieeegRKCLLIPGDLgdesfcrdlvKEVVKEFGK 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEE-ITKTFEVNILGHFWITKALLPSMMERnhGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:cd05355  106 LDILVNNAAYQHPQESIEDITTEqLEKTFRTNIFSMFYLTKAALPHLKKG--SSIINTTSVTAYKGSPHLLDYAATKGAI 183
                        170       180
                 ....*....|....*....|....*.
gi 210032112 157 VGFHRGLTselQALGKTGIKTSCLCP 182
Cdd:cd05355  184 VAFTRGLS---LQLAEKGIRVNAVAP 206
PRK07109 PRK07109
short chain dehydrogenase; Provisional
30-169 2.15e-21

short chain dehydrogenase; Provisional


Pssm-ID: 235935 [Multi-domain]  Cd Length: 334  Bit Score: 91.52  E-value: 2.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  30 RRKSVAGEIVLITGAGHGIGRQTTYEFAKR--------------------------QSILVLWDI----------NKVKK 73
Cdd:PRK07109   2 MLKPIGRQVVVITGASAGVGRATARAFARRgakvvllargeeglealaaeiraaggEALAVVADVadaeavqaaaDRAEE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  74 EVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK07109  82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAK 161
                        170
                 ....*....|....*.
gi 210032112 154 FAAVGFHRGLTSELQA 169
Cdd:PRK07109 162 HAIRGFTDSLRCELLH 177
BKR_3_SDR_c cd05345
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) ...
33-188 2.67e-21

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR; This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187603 [Multi-domain]  Cd Length: 248  Bit Score: 89.76  E-value: 2.67e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVGD----------------------------VT 79
Cdd:cd05345    2 RLEGKVAIVTGAGSGFGEGIARRFAQEGARVVIADINadgaeRVAADIGEaaiaiqadvtkradveamveaalskfgrLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVY-PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:cd05345   82 ILVNNAGITHrNKPMLEVDEEEFDRVFAVNVKSIYLSAQALVPHMEEQGGGVIINIASTAGLRPRPGLTWYNASKGWVVT 161
                        170       180       190
                 ....*....|....*....|....*....|
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNTG 188
Cdd:cd05345  162 ATKAMAVE---LAPRNIRVNCLCPVAGETP 188
meso-BDH-like_SDR_c cd05366
meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases ...
36-188 3.01e-21

meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187624 [Multi-domain]  Cd Length: 257  Bit Score: 89.74  E-value: 3.01e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK--------------------------VKKEV-----------GDV 78
Cdd:cd05366    2 SKVAIITGAAQGIGRAIAERLAADGFNIVLADLNLeeaakstiqeiseagynavavgadvtDKDDVealidqavekfGSF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSKFAAv 157
Cdd:cd05366   82 DVMVNNAGIAPITPLLTITEEDLKKVYAVNVFGVLFGIQAAARQFKKLGHgGKIINASSIAGVQGFPNLGAYSASKFAV- 160
                        170       180       190
                 ....*....|....*....|....*....|..
gi 210032112 158 gfhRGLTSEL-QALGKTGIKTSCLCPVFVNTG 188
Cdd:cd05366  161 ---RGLTQTAaQELAPKGITVNAYAPGIVKTE 189
PRK06180 PRK06180
short chain dehydrogenase; Provisional
71-182 5.09e-21

short chain dehydrogenase; Provisional


Pssm-ID: 180446 [Multi-domain]  Cd Length: 277  Bit Score: 89.20  E-value: 5.09e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  71 VKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYC 150
Cdd:PRK06180  72 AEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYC 151
                         90       100       110
                 ....*....|....*....|....*....|..
gi 210032112 151 SSKFAAVGFHRGLTSELQALgktGIKTSCLCP 182
Cdd:PRK06180 152 GSKFALEGISESLAKEVAPF---GIHVTAVEP 180
Ga5DH-like_SDR_c cd05347
gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent ...
33-191 5.75e-20

gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187605 [Multi-domain]  Cd Length: 248  Bit Score: 85.87  E-value: 5.75e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIG--------------------------RQTTYEFAKRQSILVLWDI----------NKVKKEVG 76
Cdd:cd05347    2 SLKGKVALVTGASRGIGfgiasglaeaganivinsrneekaeeAQQLIEKEGVEATAFTCDVsdeeaikaavEAIEEDFG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:cd05347   82 KIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFVSQAVARHMIKQGHGKIINICSLLSELGGPPVPAYAASKGGV 161
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:cd05347  162 AGLTKALATE---WARHGIQVNAIAPGYFATEMTE 193
PRK06181 PRK06181
SDR family oxidoreductase;
36-192 7.32e-20

SDR family oxidoreductase;


Pssm-ID: 235726 [Multi-domain]  Cd Length: 263  Bit Score: 85.80  E-value: 7.32e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN----------------KVKKEVGDVT-------------------- 79
Cdd:PRK06181   1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNetrlaslaqeladhggEALVVPTDVSdaeacerlieaavarfggid 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEI-TKTFEVNILGHFWITKALLPSMMERNhGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK06181  81 ILVNNAGITMWSRFDELTDLSVfERVMRVNYLGAVYCTHAALPHLKASR-GQIVVVSSLAGLTGVPTRSGYAASKHALHG 159
                        170       180       190
                 ....*....|....*....|....*....|....
gi 210032112 159 FHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKN 192
Cdd:PRK06181 160 FFDSLRIELAD---DGVAVTVVCPGFVATDIRKR 190
PRK12829 PRK12829
short chain dehydrogenase; Provisional
29-187 9.18e-20

short chain dehydrogenase; Provisional


Pssm-ID: 183778 [Multi-domain]  Cd Length: 264  Bit Score: 85.88  E-value: 9.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  29 QRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK----------------------------------VKKE 74
Cdd:PRK12829   4 DLLKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEaalaataarlpgakvtatvadvadpaqvervfdtAVER 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  75 VGDVTIVVNNAGTVYP-ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHG-HIVTVASVCGHEGIPYLIPYCSS 152
Cdd:PRK12829  84 FGGLDVLVNNAGIAGPtGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGgVIIALSSVAGRLGYPGRTPYAAS 163
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 153 KFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12829 164 KWAVVGLVKSLAIE---LGPLGIRVNAILPGIVRG 195
fabG PRK05565
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
36-187 1.04e-19

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235506 [Multi-domain]  Cd Length: 247  Bit Score: 85.28  E-value: 1.04e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKR-QSILVLWDINK---------VKKEVGDVTIV------------------------ 81
Cdd:PRK05565   5 GKVAIVTGASGGIGRAIAELLAKEgAKVVIAYDINEeaaqelleeIKEEGGDAIAVkadvsseedvenlveqivekfgki 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 ---VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK05565  85 dilVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAVNA 164
                        170       180
                 ....*....|....*....|....*....
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK05565 165 FTKALAKE---LAPSGIRVNAVAPGAIDT 190
PRK08226 PRK08226
SDR family oxidoreductase UcpA;
36-187 1.57e-19

SDR family oxidoreductase UcpA;


Pssm-ID: 181305 [Multi-domain]  Cd Length: 263  Bit Score: 85.24  E-value: 1.57e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN----KVKKEVG-----------DVT--------------------I 80
Cdd:PRK08226   6 GKTALITGALQGIGEGIARVFARHGANLILLDISpeieKLADELCgrghrctavvaDVRdpasvaaaikrakekegridI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGH-EGIPYLIPYCSSKFAAVGF 159
Cdd:PRK08226  86 LVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDmVADPGETAYALTKAAIVGL 165
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK08226 166 TKSLAVE---YAQSGIRVNAICPGYVRT 190
PRK06701 PRK06701
short chain dehydrogenase; Provisional
35-196 1.83e-19

short chain dehydrogenase; Provisional


Pssm-ID: 235853 [Multi-domain]  Cd Length: 290  Bit Score: 85.47  E-value: 1.83e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAK---------------------------RQSILVLWDIN----------KVKKEVGD 77
Cdd:PRK06701  45 KGKVALITGGDSGIGRAVAVLFAKegadiaivyldehedanetkqrvekegVKCLLIPGDVSdeafckdaveETVRELGR 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPA-DLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK06701 125 LDILVNNAAFQYPQqSLEDITAEQLDKTFKTNIYSYFHMTKAALPHL--KQGSAIINTGSITGYEGNETLIDYSATKGAI 202
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 210032112 157 VGFHRGLTselQALGKTGIKTSCLCPVFVNTGFtkNPSTR 196
Cdd:PRK06701 203 HAFTRSLA---QSLVQKGIRVNAVAPGPIWTPL--IPSDF 237
17beta-HSD1_like_SDR_c cd05356
17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) ...
36-239 2.21e-19

17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs; This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187614 [Multi-domain]  Cd Length: 239  Bit Score: 84.19  E-value: 2.21e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG-------------------------------DVT 79
Cdd:cd05356    1 GTWAVVTGATDGIGKAYAEELAKRGFNVILISRTqekldAVAKEIEekygvetktiaadfsagddiyeriekeleglDIG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTV--YPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd05356   81 ILVNNVGIShsIPEYFLETPEDELQDIINVNVMATLKMTRLILPGMVKRKKGAIVNISSFAGLIPTPLLATYSASKAFLD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 158 GFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRlWPVLETDEVVRSLIDGILTNKKMifvPSYIN--IFLRLQK 235
Cdd:cd05356  161 FFSRALYEEYK---SQGIDVQSLLPYLVATKMSKIRKSS-LFVPSPEQFVRSALNTLGLSKRT---TGYWShaLQGWVAR 233

                 ....
gi 210032112 236 FLPE 239
Cdd:cd05356  234 LVPE 237
PRK06841 PRK06841
short chain dehydrogenase; Provisional
33-187 2.92e-19

short chain dehydrogenase; Provisional


Pssm-ID: 180723 [Multi-domain]  Cd Length: 255  Bit Score: 84.32  E-value: 2.92e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------------KVKKEVGDVT 79
Cdd:PRK06841  12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSedvaevaaqllggnakglvcdvsdsqsveaavaAVISAFGRID 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:PRK06841  92 ILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGM 171
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06841 172 TKVLALE---WGPYGITVNAISPTVVLT 196
THN_reductase-like_SDR_c cd05362
tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6, ...
35-189 3.97e-19

tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187620 [Multi-domain]  Cd Length: 243  Bit Score: 83.48  E-value: 3.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDINKV----------KKEVGD 77
Cdd:cd05362    2 AGKVALVTGASRGIGRAIAKRLARDgasvvvnyasskaaaeevvaeieaaggKAIAVQADVSDPsqvarlfdaaEKAFGG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd05362   82 VDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGAFFVLQEAAKRL--RDGGRIINISSSLTAAYTPNYGAYAGSKAAVE 159
                        170       180       190
                 ....*....|....*....|....*....|..
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNTGF 189
Cdd:cd05362  160 AFTRVLAKE---LGGRGITVNAVAPGPVDTDM 188
PRK07454 PRK07454
SDR family oxidoreductase;
24-187 6.10e-19

SDR family oxidoreductase;


Pssm-ID: 180984 [Multi-domain]  Cd Length: 241  Bit Score: 83.08  E-value: 6.10e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  24 KFFIPQRRksvageiVLITGAGHGIGRQTTYEFAKR--QSILV---------------------------LWDINKVK-- 72
Cdd:PRK07454   1 MSLNSMPR-------ALITGASSGIGKATALAFAKAgwDLALVarsqdalealaaelrstgvkaaaysidLSNPEAIApg 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 -----KEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK07454  74 iaellEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWG 153
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 210032112 148 PYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNT 187
Cdd:PRK07454 154 AYCVSKAALAAFTKCLAEEERS---HGIRVCTITLGAVNT 190
PRK08643 PRK08643
(S)-acetoin forming diacetyl reductase;
36-187 7.43e-19

(S)-acetoin forming diacetyl reductase;


Pssm-ID: 181518 [Multi-domain]  Cd Length: 256  Bit Score: 83.24  E-value: 7.43e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGR--------------------QTTYEFAKR------QSILVLWDI----------NKVKKEVGDVT 79
Cdd:PRK08643   2 SKVALVTGAGQGIGFaiakrlvedgfkvaivdyneETAQAAADKlskdggKAIAVKADVsdrdqvfaavRQVVDTFGDLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGtVYPADLLSTKDEEI-TKTFEVNILGHFWITKALLPSMMERNHG-HIVTVASVCGHEGIPYLIPYCSSKFAAv 157
Cdd:PRK08643  82 VVVNNAG-VAPTTPIETITEEQfDKVYNINVGGVIWGIQAAQEAFKKLGHGgKIINATSQAGVVGNPELAVYSSTKFAV- 159
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 158 gfhRGLTSEL-QALGKTGIKTSCLCPVFVNT 187
Cdd:PRK08643 160 ---RGLTQTAaRDLASEGITVNAYAPGIVKT 187
retinol-DH_like_SDR_c_like cd05327
retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) ...
36-201 1.16e-18

retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212492 [Multi-domain]  Cd Length: 269  Bit Score: 82.66  E-value: 1.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKR--QSILVLWDINK---VKKEVGDVT------------------------------- 79
Cdd:cd05327    1 GKVVVITGANSGIGKETARELAKRgaHVIIACRNEEKgeeAAAEIKKETgnakveviqldlsslasvrqfaeeflarfpr 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 --IVVNNAGTVYPADLLsTKDeEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASvCGHEGIPYLIP--------- 148
Cdd:cd05327   81 ldILINNAGIMAPPRRL-TKD-GFELQFAVNYLGHFLLTNLLLPVLKASAPSRIVNVSS-IAHRAGPIDFNdldlennke 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 210032112 149 ------YCSSKFAAVGFhrglTSELQA-LGKTGIKTSCLCPVFVNT-GFTKNPSTR-LWPVL 201
Cdd:cd05327  158 yspykaYGQSKLANILF----TRELARrLEGTGVTVNALHPGVVRTeLLRRNGSFFlLYKLL 215
secoisolariciresinol-DH_like_SDR_c cd05326
secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; ...
36-187 1.78e-18

secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187587 [Multi-domain]  Cd Length: 249  Bit Score: 82.12  E-value: 1.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG---------DVT--------------------IV 81
Cdd:cd05326    4 GKVAIITGGASGIGEATARLFAKHGARVVIADIDddagqAVAAELGdpdisfvhcDVTveadvraavdtavarfgrldIM 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTV--YPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEG--IPYliPYCSSKFAAV 157
Cdd:cd05326   84 FNNAGVLgaPCYSILETSLEEFERVLDVNVYGAFLGTKHAARVMIPAKKGSIVSVASVAGVVGglGPH--AYTASKHAVL 161
                        170       180       190
                 ....*....|....*....|....*....|
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:cd05326  162 GLTRSAATE---LGEHGIRVNCVSPYGVAT 188
PRK07063 PRK07063
SDR family oxidoreductase;
35-187 1.88e-18

SDR family oxidoreductase;


Pssm-ID: 235924 [Multi-domain]  Cd Length: 260  Bit Score: 82.02  E-value: 1.88e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN--------------------------------------KVKKEVG 76
Cdd:PRK07063   6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDaalaeraaaaiardvagarvlavpadvtdaasvaaavaAAEEAFG 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK07063  86 PLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGL 165
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 157 VGFHRGLTSELQAlgkTGIKTSCLCPVFVNT 187
Cdd:PRK07063 166 LGLTRALGIEYAA---RNVRVNAIAPGYIET 193
fabG PRK06550
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
36-190 3.17e-18

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180617 [Multi-domain]  Cd Length: 235  Bit Score: 81.16  E-value: 3.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK---------RQSILVLW------------DINKVKKEVGDVTIVVNNAGTV--YpAD 92
Cdd:PRK06550   5 TKTVLITGAASGIGLAQARAFLAqgaqvygvdKQDKPDLSgnfhflqldlsdDLEPLFDWVPSVDILCNTAGILddY-KP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  93 LLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLtselqAL-- 170
Cdd:PRK06550  84 LLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQL-----ALdy 158
                        170       180
                 ....*....|....*....|
gi 210032112 171 GKTGIKTSCLCPVFVNTGFT 190
Cdd:PRK06550 159 AKDGIQVFGIAPGAVKTPMT 178
PRK06179 PRK06179
short chain dehydrogenase; Provisional
38-192 3.44e-18

short chain dehydrogenase; Provisional


Pssm-ID: 235725 [Multi-domain]  Cd Length: 270  Bit Score: 81.49  E-value: 3.44e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKR--------------QSI----LVLWD----------INKVKKEVGDVTIVVNNAGT-- 87
Cdd:PRK06179   6 VALVTGASSGIGRATAEKLARAgyrvfgtsrnparaAPIpgveLLELDvtddasvqaaVDEVIARAGRIDVLVNNAGVgl 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  88 VYPADLLSTkdEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSEL 167
Cdd:PRK06179  86 AGAAEESSI--AQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESLDHEV 163
                        170       180
                 ....*....|....*....|....*
gi 210032112 168 QALgktGIKTSCLCPVFVNTGFTKN 192
Cdd:PRK06179 164 RQF---GIRVSLVEPAYTKTNFDAN 185
PRK08264 PRK08264
SDR family oxidoreductase;
33-223 3.69e-18

SDR family oxidoreductase;


Pssm-ID: 181335 [Multi-domain]  Cd Length: 238  Bit Score: 80.70  E-value: 3.69e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQ---------------------TTYEFAKRQSILVL-----WDINKVKKEVGDVTIVVNNAG 86
Cdd:PRK08264   3 DIKGKVVLVTGANRGIGRAfveqllargaakvyaaardpeSVTDLGPRVVPLQLdvtdpASVAAAAEAASDVTILVNNAG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  87 TVYPADLLSTKDEE-ITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTS 165
Cdd:PRK08264  83 IFRTGSLLLEGDEDaLRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRA 162
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 210032112 166 ELQALgktGIKTSCLCPVFVNTGFTknpSTRLWPVLETDEVVRSLIDGILTNKKMIFV 223
Cdd:PRK08264 163 ELAPQ---GTRVLGVHPGPIDTDMA---AGLDAPKASPADVARQILDALEAGDEEVLP 214
SDR_c11 cd05364
classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that ...
35-192 8.44e-18

classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187622 [Multi-domain]  Cd Length: 253  Bit Score: 80.15  E-value: 8.44e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAK------------------RQSI-----------LVLWD----------INKVKKEV 75
Cdd:cd05364    2 SGKVAIITGSSSGIGAGTAILFARlgarlaltgrdaerleetRQSClqagvsekkilLVVADlteeegqdriISTTLAKF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMErNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:cd05364   82 GRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAVIYLTKLAVPHLIK-TKGEIVNVSSVAGGRSFPGVLYYCISKAA 160
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 156 AVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:cd05364  161 LDQFTRCTALE---LAPKGVRVNSVSPGVIVTGFHRR 194
PRK12429 PRK12429
3-hydroxybutyrate dehydrogenase; Provisional
36-187 8.66e-18

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 237100 [Multi-domain]  Cd Length: 258  Bit Score: 80.32  E-value: 8.66e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK--------KEVG--------DVT-------------------- 79
Cdd:PRK12429   4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAaaaaaealQKAGgkaigvamDVTdeeainagidyavetfggvd 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAG--TVYPADLLSTKDEEitKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK12429  84 ILVNNAGiqHVAPIEDFPTEKWK--KMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLI 161
                        170       180       190
                 ....*....|....*....|....*....|
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12429 162 GLTKVVALE---GATHGVTVNAICPGYVDT 188
PRK12824 PRK12824
3-oxoacyl-ACP reductase;
37-214 1.77e-17

3-oxoacyl-ACP reductase;


Pssm-ID: 183773 [Multi-domain]  Cd Length: 245  Bit Score: 79.04  E-value: 1.77e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTT---------------------------YEFAKRQSILVLWDI----------NKVKKEVGDVT 79
Cdd:PRK12824   3 KIALVTGAKRGIGSAIArellndgyrviatyfsgndcakdwfeeYGFTEDQVRLKELDVtdteecaealAEIEEEEGPVD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:PRK12824  83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIGF 162
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPvfvntGFTKNPSTRLWPvletDEVVRSLIDGI 214
Cdd:PRK12824 163 TKALASE---GARYGITVNCIAP-----GYIATPMVEQMG----PEVLQSIVNQI 205
PRK08220 PRK08220
2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
35-171 2.00e-17

2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated


Pssm-ID: 236190 [Multi-domain]  Cd Length: 252  Bit Score: 79.16  E-value: 2.00e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------KVKKEVGDVTIVVNNAGT 87
Cdd:PRK08220   7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAfltqedypfatfvldvsdaaavaqvcqRLLAETGPLDVLVNAAGI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  88 VYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHegipylIP------YCSSKFAAVGFHR 161
Cdd:PRK08220  87 LRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH------VPrigmaaYGASKAALTSLAK 160
                        170
                 ....*....|
gi 210032112 162 GLTSELQALG 171
Cdd:PRK08220 161 CVGLELAPYG 170
type1_17beta-HSD-like_SDR_c cd09806
human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, ...
76-246 2.12e-17

human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187666 [Multi-domain]  Cd Length: 258  Bit Score: 79.04  E-value: 2.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:cd09806   78 RHVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFGTVRMLQAFLPDMKRRGSGRILVTSSVGGLQGLPFNDVYCASKFA 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 156 AVGFHRGLTseLQALgKTGIKTSCLCPVFVNTGFTKNpstrlwpVLETDEVVRSL--IDGILTNKKMIFVPSYINIFLRL 233
Cdd:cd09806  158 LEGLCESLA--VQLL-PFNVHLSLIECGPVHTAFMEK-------VLGSPEEVLDRtaDDITTFHFFYQYLAHSKQVFREA 227
                        170
                 ....*....|...
gi 210032112 234 QKFLPERASAILN 246
Cdd:cd09806  228 AQNPEEVAEVFLT 240
CAD_SDR_c cd08934
clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent ...
34-190 2.56e-17

clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187639 [Multi-domain]  Cd Length: 243  Bit Score: 78.73  E-value: 2.56e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKR--------------------------QSILVLWDI----------NKVKKEVGD 77
Cdd:cd08934    1 LQGKVALVTGASSGIGEATARALAAEgaavaiaarrvdrlealadeleaeggKALVLELDVtdeqqvdaavERTVEALGR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd08934   81 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYTTHAALPHHLLRNKGTIVNISSVAGRVAVRNSAVYNATKFGVN 160
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 158 GFHRGLTSELQalgKTGIKTSCLCPVFVNTGFT 190
Cdd:cd08934  161 AFSEGLRQEVT---ERGVRVVVIEPGTVDTELR 190
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
69-191 3.19e-17

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 78.05  E-value: 3.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  69 NKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEI-TKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGipylI 147
Cdd:cd05324   70 DFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQaRETMKTNFFGTVDVTQALLPLLKKSPAGRIVNVSSGLGSLT----S 145
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 210032112 148 PYCSSKFAAVGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTK 191
Cdd:cd05324  146 AYGVSKAALNALTRILAKELK---ETGIKVNACCPGWVKTDMGG 186
PRK12936 PRK12936
3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
70-190 5.31e-17

3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed


Pssm-ID: 171820 [Multi-domain]  Cd Length: 245  Bit Score: 78.03  E-value: 5.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  70 KVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPY 149
Cdd:PRK12936  73 KAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANY 152
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 210032112 150 CSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFT 190
Cdd:PRK12936 153 CASKAGMIGFSKSLAQEIAT---RNVTVNCVAPGFIESAMT 190
PRK08267 PRK08267
SDR family oxidoreductase;
39-194 9.25e-17

SDR family oxidoreductase;


Pssm-ID: 236210 [Multi-domain]  Cd Length: 260  Bit Score: 77.29  E-value: 9.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEVG---------DVT---------------------IVVN 83
Cdd:PRK08267   4 IFITGAASGIGRATALLFAAEGWRVGAYDINEaglaaLAAELGagnawtgalDVTdraawdaaladfaaatggrldVLFN 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAvgfhRGL 163
Cdd:PRK08267  84 NAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAV----RGL 159
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 164 TselQAL----GKTGIKTSCLCPVFVNTGFTKNPS 194
Cdd:PRK08267 160 T---EALdlewRRHGIRVADVMPLFVDTAMLDGTS 191
PRK06138 PRK06138
SDR family oxidoreductase;
35-187 1.37e-16

SDR family oxidoreductase;


Pssm-ID: 235712 [Multi-domain]  Cd Length: 252  Bit Score: 76.73  E-value: 1.37e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWD-----------------------------------INKVKKEVGDVT 79
Cdd:PRK06138   4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADrdaeaaervaaaiaaggrafarqgdvgsaeavealVDFVAARWGRLD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:PRK06138  84 VLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIASL 163
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06138 164 TRAMALD---HATDGIRVNAVAPGTIDT 188
SDR_c7 cd05354
classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a ...
34-171 1.41e-16

classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187612 [Multi-domain]  Cd Length: 235  Bit Score: 76.68  E-value: 1.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKRQS--------------ILVLWDINKV----------------KKEVGDVTIVVN 83
Cdd:cd05354    1 IKDKTVLVTGANRGIGKAFVESLLAHGAkkvyaavrdpgsaaHLVAKYGDKVvplrldvtdpesikaaAAQAKDVDVVIN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKDEEITKT-FEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRG 162
Cdd:cd05354   81 NAGVLKPATLLEEGALEALKQeMDVNVFGLLRLAQAFAPVLKANGGGAIVNLNSVASLKNFPAMGTYSASKSAAYSLTQG 160

                 ....*....
gi 210032112 163 LTSELQALG 171
Cdd:cd05354  161 LRAELAAQG 169
PRK09291 PRK09291
SDR family oxidoreductase;
39-189 1.42e-16

SDR family oxidoreductase;


Pssm-ID: 181762 [Multi-domain]  Cd Length: 257  Bit Score: 76.96  E-value: 1.42e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKR--------QSILVLWDINKVKKEVG----------------------DVTIVVNNAGTV 88
Cdd:PRK09291   5 ILITGAGSGFGREVALRLARKghnviagvQIAPQVTALRAEAARRGlalrvekldltdaidraqaaewDVDVLLNNAGIG 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  89 YPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQ 168
Cdd:PRK09291  85 EAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEAMHAELK 164
                        170       180
                 ....*....|....*....|.
gi 210032112 169 ALgktGIKTSCLCPVFVNTGF 189
Cdd:PRK09291 165 PF---GIQVATVNPGPYLTGF 182
3beta-17beta-HSD_like_SDR_c cd05341
3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes ...
32-195 1.57e-16

3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187600 [Multi-domain]  Cd Length: 247  Bit Score: 76.65  E-value: 1.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG--------DVT------------------- 79
Cdd:cd05341    1 NRLKGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILdeegqAAAAELGdaarffhlDVTdedgwtavvdtareafgrl 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 -IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:cd05341   81 dVLVNNAGILTGGTVETTTLEEWRRLLDINLTGVFLGTRAVIPPMKEAGGGSIINMSSIEGLVGDPALAAYNASKGAVRG 160
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 159 FHRGLTSELqALGKTGIKTSCLCPvfvntGFTKNPST 195
Cdd:cd05341  161 LTKSAALEC-ATQGYGIRVNSVHP-----GYIYTPMT 191
DH-DHB-DH_SDR_c cd05331
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 ...
39-171 1.87e-16

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187592 [Multi-domain]  Cd Length: 244  Bit Score: 76.35  E-value: 1.87e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWD-----------------------------INKVKKEVGDVTIVVNNAGTVY 89
Cdd:cd05331    1 VIVTGAAQGIGRAVARHLLQAGATVIALDlpfvllleygdplrltpldvadaaavrevCSRLLAEHGPIDALVNCAGVLR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  90 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQA 169
Cdd:cd05331   81 PGATDPLSTEDWEQTFAVNVTGVFNLLQAVAPHMKDRRTGAIVTVASNAAHVPRISMAAYGASKAALASLSKCLGLELAP 160

                 ..
gi 210032112 170 LG 171
Cdd:cd05331  161 YG 162
type2_17beta_HSD-like_SDR_c cd09805
human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; ...
70-197 2.38e-16

human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187665 [Multi-domain]  Cd Length: 281  Bit Score: 76.55  E-value: 2.38e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  70 KVKKEVGDVTI--VVNNAG---TVYPADLLSTKDeeITKTFEVNILGHFWITKALLPsMMERNHGHIVTVASVCGHEGIP 144
Cdd:cd09805   69 WVKEHVGEKGLwgLVNNAGilgFGGDEELLPMDD--YRKCMEVNLFGTVEVTKAFLP-LLRRAKGRVVNVSSMGGRVPFP 145
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 210032112 145 YLIPYCSSKFAAVGFHRGLTSELQALgktGIKTSCLCPVFVNTGFTKNPSTRL 197
Cdd:cd09805  146 AGGAYCASKAAVEAFSDSLRRELQPW---GVKVSIIEPGNFKTGITGNSELWE 195
PRK05872 PRK05872
short chain dehydrogenase; Provisional
33-171 3.06e-16

short chain dehydrogenase; Provisional


Pssm-ID: 235633 [Multi-domain]  Cd Length: 296  Bit Score: 76.55  E-value: 3.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEVG----------DVT------------------ 79
Cdd:PRK05872   6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEaelaaLAAELGgddrvltvvaDVTdlaamqaaaeeaverfgg 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 --IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNhGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK05872  86 idVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERR-GYVLQVSSLAAFAAAPGMAAYCASKAGVE 164
                        170
                 ....*....|....
gi 210032112 158 GFHRGLTSELQALG 171
Cdd:PRK05872 165 AFANALRLEVAHHG 178
PRK07832 PRK07832
SDR family oxidoreductase;
39-222 3.32e-16

SDR family oxidoreductase;


Pssm-ID: 181139 [Multi-domain]  Cd Length: 272  Bit Score: 76.23  E-value: 3.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDIN-------------------------------------KVKKEVGDVTIV 81
Cdd:PRK07832   3 CFVTGAASGIGRATALRLAAQGAELFLTDRDadglaqtvadaralggtvpehraldisdydavaafaaDIHAAHGSMDVV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHG-HIVTVASVCGHEGIPYLIPYCSSKFAAvgfh 160
Cdd:PRK07832  83 MNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGgHLVNVSSAAGLVALPWHAAYSASKFGL---- 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 210032112 161 RGLTSELQ-ALGKTGIKTSCLCPVFVNTGFTK----------NPSTRLW------PVLETDEVVRSLIDGILTNKKMIF 222
Cdd:PRK07832 159 RGLSEVLRfDLARHGIGVSVVVPGAVKTPLVNtveiagvdreDPRVQKWvdrfrgHAVTPEKAAEKILAGVEKNRYLVY 237
BKR_like_SDR_like cd05344
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup ...
36-188 5.68e-16

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187602 [Multi-domain]  Cd Length: 253  Bit Score: 75.00  E-value: 5.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK--------------------------RQSILVLWD------INKVKKEVGD----VT 79
Cdd:cd05344    1 GKVALVTAASSGIGLAIARALARegarvaicarnrenleraaselraggAGVLAVVADltdpedIDRLVEKAGDafgrVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:cd05344   81 ILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIRIVRAVLPGMKERGWGRIVNISSLTVKEPEPNLVLSNVARAGLIGL 160
                        170       180
                 ....*....|....*....|....*....
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNTG 188
Cdd:cd05344  161 VKTLSRE---LAPDGVTVNSVLPGYIDTE 186
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
46-187 6.45e-16

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 74.77  E-value: 6.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   46 HGIGRQTTYEFAKRQSILVLWDIN--------KVKKEVG------DVT--------------------IVVNNAGTVYP- 90
Cdd:pfam13561   6 SGIGWAIARALAEEGAEVVLTDLNealakrveELAEELGaavlpcDVTdeeqvealvaaavekfgrldILVNNAGFAPKl 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112   91 -ADLLSTKDEEITKTFEVNILGHFWITKALLPsMMERNhGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSElqa 169
Cdd:pfam13561  86 kGPFLDTSREDFDRALDVNLYSLFLLAKAALP-LMKEG-GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVE--- 160
                         170
                  ....*....|....*...
gi 210032112  170 LGKTGIKTSCLCPVFVNT 187
Cdd:pfam13561 161 LGPRGIRVNAISPGPIKT 178
PRK13394 PRK13394
3-hydroxybutyrate dehydrogenase; Provisional
36-187 8.10e-16

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 184025 [Multi-domain]  Cd Length: 262  Bit Score: 74.93  E-value: 8.10e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVT 79
Cdd:PRK13394   7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNqdganavadeinkaggkaigvamdvtnedavnagidKVAERFGSVD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMM-ERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK13394  87 ILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYkDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLG 166
                        170       180
                 ....*....|....*....|....*....
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK13394 167 LARVLAKE---GAKHNVRSHVVCPGFVRT 192
PRK08213 PRK08213
gluconate 5-dehydrogenase; Provisional
70-191 9.15e-16

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181295 [Multi-domain]  Cd Length: 259  Bit Score: 74.60  E-value: 9.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  70 KVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLP-SMMERNHGHIVTVASVCG----HEGIP 144
Cdd:PRK08213  82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKrSMIPRGYGRIINVASVAGlggnPPEVM 161
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 210032112 145 YLIPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK08213 162 DTIAYNTSKGAVINFTRALAAE---WGPHGIRVNAIAPGFFPTKMTR 205
PKR_SDR_c cd08945
Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR ...
76-187 1.55e-15

Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187649 [Multi-domain]  Cd Length: 258  Bit Score: 74.11  E-value: 1.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPS--MMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:cd08945   79 GPIDVLVNNAGRSGGGATAELADELWLDVVETNLTGVFRVTKEVLKAggMLERGTGRIINIASTGGKQGVVHAAPYSASK 158
                         90       100       110
                 ....*....|....*....|....*....|....
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:cd08945  159 HGVVGFTKALGLE---LARTGITVNAVCPGFVET 189
PRK08324 PRK08324
bifunctional aldolase/short-chain dehydrogenase;
30-176 1.95e-15

bifunctional aldolase/short-chain dehydrogenase;


Pssm-ID: 236241 [Multi-domain]  Cd Length: 681  Bit Score: 75.65  E-value: 1.95e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  30 RRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG----------DVT--------------- 79
Cdd:PRK08324 416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDeeaaeAAAAELGgpdralgvacDVTdeaavqaafeeaala 495
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 -----IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK08324 496 fggvdIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLgGSIVFIASKNAVNPGPNFGAYGAAK 575
                        170       180
                 ....*....|....*....|...
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIK 176
Cdd:PRK08324 576 AAELHLVRQLALE---LGPDGIR 595
SDR_c12 cd08944
classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site ...
34-191 2.24e-15

classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187648 [Multi-domain]  Cd Length: 246  Bit Score: 73.29  E-value: 2.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------------KVKKEVGDVTI 80
Cdd:cd08944    1 LEGKVAIVTGAGAGIGAACAARLAREGARVVVADIDggaaqavvaqiaggalalrvdvtdeqqvaalfeRAVEEFGGLDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPA-DLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKfAAVgf 159
Cdd:cd08944   81 LVNNAGAMHLTpAIIDTDLAVWDQTMAINLRGTFLCCRHAAPRMIARGGGSIVNLSSIAGQSGDPGYGAYGASK-AAI-- 157
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 160 hRGLTSELQA-LGKTGIKTSCLCPVFVNTGFTK 191
Cdd:cd08944  158 -RNLTRTLAAeLRHAGIRCNALAPGLIDTPLLL 189
CR_SDR_c cd08936
Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine ...
29-198 2.48e-15

Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187641 [Multi-domain]  Cd Length: 256  Bit Score: 73.34  E-value: 2.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  29 QRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVL----------------------------------WD--INKVK 72
Cdd:cd08936    3 TRRDPLANKVALVTASTDGIGLAIARRLAQDGAHVVVssrkqqnvdravatlqgeglsvtgtvchvgkaedRErlVATAV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 KEVGDVTIVVNNAgTVYP--ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYC 150
Cdd:cd08936   83 NLHGGVDILVSNA-AVNPffGNILDSTEEVWDKILDVNVKATALMTKAVVPEMEKRGGGSVVIVSSVAAFHPFPGLGPYN 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 210032112 151 SSKFAAVGFHRGLTSELQALgktGIKTSCLCPVFVNTGFtknpSTRLW 198
Cdd:cd08936  162 VSKTALLGLTKNLAPELAPR---NIRVNCLAPGLIKTSF----SSALW 202
PRK08263 PRK08263
short chain dehydrogenase; Provisional
73-171 3.39e-15

short chain dehydrogenase; Provisional


Pssm-ID: 181334 [Multi-domain]  Cd Length: 275  Bit Score: 73.15  E-value: 3.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 KEVGDVTIVVNNAGTvypadLLSTKDEEITKT-----FEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK08263  73 EHFGRLDIVVNNAGY-----GLFGMIEEVTESearaqIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSG 147
                         90       100
                 ....*....|....*....|....
gi 210032112 148 PYCSSKFAAVGFHRGLTSELQALG 171
Cdd:PRK08263 148 IYHASKWALEGMSEALAQEVAEFG 171
PRK05650 PRK05650
SDR family oxidoreductase;
39-188 3.55e-15

SDR family oxidoreductase;


Pssm-ID: 235545 [Multi-domain]  Cd Length: 270  Bit Score: 73.15  E-value: 3.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEVG-----------DVT--------------------IVV 82
Cdd:PRK05650   3 VMITGAASGLGRAIALRWAREGWRLALADVNEeggeeTLKLLReaggdgfyqrcDVRdysqltalaqaceekwggidVIV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRG 162
Cdd:PRK05650  83 NNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALSET 162
                        170       180
                 ....*....|....*....|....*.
gi 210032112 163 LTSELQalgKTGIKTSCLCPVFVNTG 188
Cdd:PRK05650 163 LLVELA---DDEIGVHVVCPSFFQTN 185
PRK06172 PRK06172
SDR family oxidoreductase;
32-187 7.60e-15

SDR family oxidoreductase;


Pssm-ID: 180440 [Multi-domain]  Cd Length: 253  Bit Score: 72.09  E-value: 7.60e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK--------KEVG--------DVT---------------- 79
Cdd:PRK06172   3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGgeetvaliREAGgealfvacDVTrdaevkalveqtiaay 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ----IVVNNAGT-VYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKF 154
Cdd:PRK06172  83 grldYAFNNAGIeIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKH 162
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 155 AAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06172 163 AVIGLTKSAAIE---YAKKGIRVNAVCPAVIDT 192
SDR_c9 cd08931
classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and ...
39-187 7.78e-15

classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187636 [Multi-domain]  Cd Length: 227  Bit Score: 71.71  E-value: 7.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEVG---------DVT---------------------IVVN 83
Cdd:cd08931    3 IFITGAASGIGRETALLFARNGWFVGLYDIDEdglaaLAAELGaenvvagalDVTdraawaaaladfaaatggrldALFN 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGL 163
Cdd:cd08931   83 NAGVGRGGPFEDVPLAAHDRMVDINVKGVLNGAYAALPYLKATPGARVINTASSSAIYGQPDLAVYSATKFAVRGLTEAL 162
                        170       180
                 ....*....|....*....|....
gi 210032112 164 TSELQALgktGIKTSCLCPVFVNT 187
Cdd:cd08931  163 DVEWARH---GIRVADVWPWFVDT 183
PRK07097 PRK07097
gluconate 5-dehydrogenase; Provisional
33-136 8.78e-15

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 235933 [Multi-domain]  Cd Length: 265  Bit Score: 72.02  E-value: 8.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVG 76
Cdd:PRK07097   7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINqelvdkglaayrelgieahgyvcdvtdedgvqamvsQIEKEVG 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVAS 136
Cdd:PRK07097  87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICS 146
hydroxyacyl-CoA-like_DH_SDR_c-like cd05353
(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids ...
36-182 8.87e-15

(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187611 [Multi-domain]  Cd Length: 250  Bit Score: 71.58  E-value: 8.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDI--------------NKVKKEV-------------------------- 75
Cdd:cd05353    5 GRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLggdrkgsgksssaaDKVVDEIkaaggkavanydsvedgekivktaid 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 --GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:cd05353   85 afGRVDILVNNAGILRDRSFAKMSEEDWDLVMRVHLKGSFKVTRAAWPYMRKQKFGRIINTSSAAGLYGNFGQANYSAAK 164
                        170       180
                 ....*....|....*....|....*....
gi 210032112 154 FAAVGFHRGLTSELQalgKTGIKTSCLCP 182
Cdd:cd05353  165 LGLLGLSNTLAIEGA---KYNITCNTIAP 190
cyclohexanol_reductase_SDR_c cd05330
cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol ...
37-182 1.17e-14

cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187591 [Multi-domain]  Cd Length: 257  Bit Score: 71.40  E-value: 1.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK---------------------VKKEVGDVTIV-------------- 81
Cdd:cd05330    4 KVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEegleaakaalleiapdaevllIKADVSDEAQVeayvdatveqfgri 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 ---VNNAGTVYPADLLSTKD-EEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd05330   84 dgfFNNAGIEGKQNLTEDFGaDEFDKVVSINLRGVFYGLEKVLKVMREQGSGMIVNTASVGGIRGVGNQSGYAAAKHGVV 163
                        170       180
                 ....*....|....*....|....*
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd05330  164 GLTRNSAVE---YGQYGIRINAIAP 185
PRK12827 PRK12827
short chain dehydrogenase; Provisional
33-208 1.68e-14

short chain dehydrogenase; Provisional


Pssm-ID: 237219 [Multi-domain]  Cd Length: 249  Bit Score: 70.90  E-value: 1.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKR------------------------------QSILVLWDINKVK---------- 72
Cdd:PRK12827   3 SLDSRRVLITGGSGGLGRAIAVRLAADgadvivldihpmrgraeadavaagieaaggKALGLAFDVRDFAatraaldagv 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 KEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMME-RNHGHIVTVASVCGHEGIPYLIPYCS 151
Cdd:PRK12827  83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRaRRGGRIVNIASVAGVRGNRGQVNYAA 162
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 210032112 152 SKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPSTRLWpVLETDEVVR 208
Cdd:PRK12827 163 SKAGLIGLTKTLANE---LAPRGITVNAVAPGAINTPMADNAAPTEH-LLNPVPVQR 215
R1PA_ADH_SDR_c cd08943
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has ...
36-182 4.88e-14

rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187647 [Multi-domain]  Cd Length: 250  Bit Score: 69.73  E-value: 4.88e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----------------------------------KVKKEVGDVTI 80
Cdd:cd08943    1 GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDpeiaekvaeaaqggpralgvqcdvtseaqvqsafeQAVLEFGGLDI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:cd08943   81 VVSNAGIATSSPIAETSLEDWNRSMDINLTGHFLVSREAFRIMKSQGiGGNIVFNASKNAVAPGPNAAAYSAAKAAEAHL 160
                        170       180
                 ....*....|....*....|...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd08943  161 ARCLALE---GGEDGIRVNTVNP 180
PRK06484 PRK06484
short chain dehydrogenase; Validated
31-187 5.55e-14

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 71.03  E-value: 5.55e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------------KVKKEVGD 77
Cdd:PRK06484 264 PLAESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDaegakklaealgdehlsvqaditdeaavesafaQIQARWGR 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYP-ADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK06484 344 LDVLVNNAGIAEVfKPSLEQSAEDFTRVYDVNLSGAFACARAAARLM--SQGGVIVNLGSIASLLALPPRNAYCASKAAV 421
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 157 VGFHRGLTSELQALgktGIKTSCLCPVFVNT 187
Cdd:PRK06484 422 TMLSRSLACEWAPA---GIRVNTVAPGYIET 449
SDR cd02266
Short-chain dehydrogenases/reductases (SDR); SDRs are a functionally diverse family of ...
39-190 7.82e-14

Short-chain dehydrogenases/reductases (SDR); SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187535 [Multi-domain]  Cd Length: 186  Bit Score: 67.93  E-value: 7.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLwdinkvkkEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKA 118
Cdd:cd02266    1 VLVTGGSGGIGGAIARWLASRGSPKVL--------VVSRRDVVVHNAAILDDGRLIDLTGSRIERAIRANVVGTRRLLEA 72
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 210032112 119 LLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFT 190
Cdd:cd02266   73 ARELMKAKRLGRFILISSVAGLFGAPGLGGYAASKAALDGLAQQWASEGWG---NGLPATAVACGTWAGSGM 141
PRK06484 PRK06484
short chain dehydrogenase; Validated
36-187 9.18e-14

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 70.65  E-value: 9.18e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------------KVKKEVGDVTIVV 82
Cdd:PRK06484   5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNverareradslgpdhhalamdvsdeaqiregfeQLHREFGRIDVLV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTV--YPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGH-IVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:PRK06484  85 NNAGVTdpTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAaIVNVASGAGLVALPKRTAYSASKAAVISL 164
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06484 165 TRSLACE---WAAKGIRVNAVLPGYVRT 189
PRK12935 PRK12935
acetoacetyl-CoA reductase; Provisional
36-187 1.07e-13

acetoacetyl-CoA reductase; Provisional


Pssm-ID: 183832 [Multi-domain]  Cd Length: 247  Bit Score: 68.88  E-value: 1.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDINKV----------KKEVGDV 78
Cdd:PRK12935   6 GKVAIVTGGAKGIGKAITVALAQEgakvvinynsskeaaenlvnelgkeghDVYAVQADVSKVedanrlveeaVNHFGKV 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK12935  86 DILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKAGMLG 165
                        170       180
                 ....*....|....*....|....*....
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12935 166 FTKSLALE---LAKTNVTVNAICPGFIDT 191
carb_red_sniffer_like_SDR_c cd05325
carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl ...
39-219 1.82e-13

carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187586 [Multi-domain]  Cd Length: 233  Bit Score: 67.71  E-value: 1.82e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVL--------------------------WDIN--------KVKKEVGDVTI--VV 82
Cdd:cd05325    1 VLITGASRGIGLELVRQLLARGNNTVIatcrdpsaatelaalgashsrlhileLDVTdeiaesaeAVAERLGDAGLdvLI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEE-ITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG-----HEGIPYliPYCSSKFAA 156
Cdd:cd05325   81 NNAGILHSYGPASEVDSEdLLEVFQVNVLGPLLLTQAFLPLLLKGARAKIINISSRVGsigdnTSGGWY--SYRASKAAL 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 210032112 157 VGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKnPSTRLWPVLETDEVVRSLIDGILTNKK 219
Cdd:cd05325  159 NMLTKSLAVELKR---DGITVVSLHPGWVRTDMGG-PFAKNKGPITPEESVAGLLKVIDNLNE 217
PRK07060 PRK07060
short chain dehydrogenase; Provisional
33-210 2.41e-13

short chain dehydrogenase; Provisional


Pssm-ID: 180817 [Multi-domain]  Cd Length: 245  Bit Score: 67.82  E-value: 2.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVGDVTIV----------------------VNNA 85
Cdd:PRK07060   6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNaaaldRLAGETGCEPLRldvgddaairaalaaagafdglVNCA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  86 GTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLT 164
Cdd:PRK07060  86 GIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRgGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVLC 165
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 210032112 165 SElqaLGKTGIKTSClcpvfVNTGFTKNP-STRLW-------PVL---------ETDEVVRSL 210
Cdd:PRK07060 166 VE---LGPHGIRVNS-----VNPTVTLTPmAAEAWsdpqksgPMLaaiplgrfaEVDDVAAPI 220
XR_like_SDR_c cd05351
xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins ...
33-187 2.97e-13

xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187609 [Multi-domain]  Cd Length: 244  Bit Score: 67.50  E-value: 2.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILV-------------------------LWDINKVKK---EVGDVTIVVNN 84
Cdd:cd05351    4 DFAGKRALVTGAGKGIGRATVKALAKAGARVVavsrtqadldslvrecpgiepvcvdLSDWDATEEalgSVGPVDLLVNN 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  85 AGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGL 163
Cdd:cd05351   84 AAVAILQPFLEVTKEAFDRSFDVNVRAVIHVSQIVARGMIARGvPGSIVNVSSQASQRALTNHTVYCSTKAALDMLTKVM 163
                        170       180
                 ....*....|....*....|....
gi 210032112 164 TSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:cd05351  164 ALE---LGPHKIRVNSVNPTVVMT 184
PRK09072 PRK09072
SDR family oxidoreductase;
39-189 3.76e-13

SDR family oxidoreductase;


Pssm-ID: 236372 [Multi-domain]  Cd Length: 263  Bit Score: 67.27  E-value: 3.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVL----------------------W---------DINKVKK---EVGDVTIVVNN 84
Cdd:PRK09072   8 VLLTGASGGIGQALAEALAAAGARLLLvgrnaeklealaarlpypgrhrWvvadltseaGREAVLArarEMGGINVLINN 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  85 AGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLT 164
Cdd:PRK09072  88 AGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFSEALR 167
                        170       180
                 ....*....|....*....|....*
gi 210032112 165 SELQAlgkTGIKTSCLCPVFVNTGF 189
Cdd:PRK09072 168 RELAD---TGVRVLYLAPRATRTAM 189
SDR_c2 cd05370
classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka ...
32-221 4.08e-13

classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187628 [Multi-domain]  Cd Length: 228  Bit Score: 66.95  E-value: 4.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEF----------------------------------AKRQSILVLwdINKVKKEVGD 77
Cdd:cd05370    1 MKLTGNTVLITGGTSGIGLALARKFleagntviitgrreerlaeakkelpnihtivldvGDAESVEAL--AEALLSEYPN 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKD--EEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHegIPYLI-P-YCSSK 153
Cdd:cd05370   79 LDILINNAGIQRPIDLRDPASdlDKADTEIDTNLIGPIRLIKAFLPHLKKQPEATIVNVSSGLAF--VPMAAnPvYCATK 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 210032112 154 FAAVGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTK---NPSTRLWPVLETDEVVRSLIDGILTNKKMI 221
Cdd:cd05370  157 AALHSYTLALRHQLK---DTGVEVVEIVPPAVDTELHEerrNPDGGTPRKMPLDEFVDEVVAGLERGREEI 224
SDR_c4 cd08929
classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical ...
39-212 4.69e-13

classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187634 [Multi-domain]  Cd Length: 226  Bit Score: 66.76  E-value: 4.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFA-------------KRQSILVLWDINKVKKEVGDVT--------------------IVVNNA 85
Cdd:cd08929    3 ALVTGASRGIGEATARLLHaegyrvgicardeARLAAAAAQELEGVLGLAGDVRdeadvrravdameeafggldALVNNA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  86 GTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTS 165
Cdd:cd08929   83 GVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHKAAPALLRRGGGTIVNVGSLAGKNAFKGGAAYNASKFGLLGLSEAAML 162
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 210032112 166 ELQalgKTGIKTSCLCPVFVNTGFTKNPSTRLWpVLETDEVVRSLID 212
Cdd:cd08929  163 DLR---EANIRVVNVMPGSVDTGFAGSPEGQAW-KLAPEDVAQAVLF 205
MDH-like_SDR_c cd05352
mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes ...
33-197 4.88e-13

mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187610 [Multi-domain]  Cd Length: 252  Bit Score: 66.97  E-value: 4.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWD-------------------------------------INKVKKEV 75
Cdd:cd05352    5 SLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYnsapraeekaeelakkygvktkaykcdvssqesvektFKQIQKDF 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGH-EGIPYLI-PYCSSK 153
Cdd:cd05352   85 GKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVFNCAQAAAKIFKKQGKGSLIITASMSGTiVNRPQPQaAYNASK 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 210032112 154 FAAVGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRL 197
Cdd:cd05352  165 AAVIHLAKSLAVEWA---KYFIRVNSISPGYIDTDLTDFVDKEL 205
HBDH_SDR_c cd08940
d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, ...
36-192 5.37e-13

d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187644 [Multi-domain]  Cd Length: 258  Bit Score: 67.09  E-value: 5.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK-------------------------RQSILVLWD-------------INKVKKEVGD 77
Cdd:cd08940    2 GKVALVTGSTSGIGLGIARALAAaganivlngfgdaaeieavraglaaKHGVKVLYHgadlskpaaiedmVAYAQRQFGG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:cd08940   82 VDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAVFHTTRLALPHMKKQGWGRIINIASVHGLVASANKSAYVAAKHGVV 161
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKN 192
Cdd:cd08940  162 GLTKVVALE---TAGTGVTCNAICPGWVLTPLVEK 193
PRK05876 PRK05876
short chain dehydrogenase; Provisional
35-218 5.68e-13

short chain dehydrogenase; Provisional


Pssm-ID: 135637 [Multi-domain]  Cd Length: 275  Bit Score: 66.90  E-value: 5.68e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVKKE------------------------------------VGDV 78
Cdd:PRK05876   5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRqavnhlraegfdvhgvmcdvrhreevthladeafrlLGHV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK05876  85 DVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTgGHVVFTASFAGLVPNAGLGAYGVAKYGVV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 158 GFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKNpSTRL----------------WPV----LETDEVVRSLIDGILTN 217
Cdd:PRK05876 165 GLAETLAREVTA---DGIGVSVLCPMVVETNLVAN-SERIrgaacaqssttgspgpLPLqddnLGVDDIAQLTADAILAN 240

                 .
gi 210032112 218 K 218
Cdd:PRK05876 241 R 241
PRK06171 PRK06171
sorbitol-6-phosphate 2-dehydrogenase; Provisional
33-176 1.11e-12

sorbitol-6-phosphate 2-dehydrogenase; Provisional


Pssm-ID: 180439 [Multi-domain]  Cd Length: 266  Bit Score: 66.19  E-value: 1.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN---------------------------KVKKEVGDVTIVVNNA 85
Cdd:PRK06171   6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHggdgqhenyqfvptdvssaeevnhtvaEIIEKFGRIDGLVNNA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  86 GTVYPADLLSTKDEE---------ITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK06171  86 GINIPRLLVDEKDPAgkyelneaaFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEGQSCYAATKAAL 165
                        170       180
                 ....*....|....*....|
gi 210032112 157 VGFHRGLTSElqaLGKTGIK 176
Cdd:PRK06171 166 NSFTRSWAKE---LGKHNIR 182
PRK12939 PRK12939
short chain dehydrogenase; Provisional
33-214 1.43e-12

short chain dehydrogenase; Provisional


Pssm-ID: 183833 [Multi-domain]  Cd Length: 250  Bit Score: 65.38  E-value: 1.43e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-------------------VKKEVGD---------------- 77
Cdd:PRK12939   4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAaearelaaaleaaggrahaIAADLADpasvqrffdaaaaalg 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 -VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK12939  84 gLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAV 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNpstrlwpvLETDEVVRSLIDGI 214
Cdd:PRK12939 164 IGMTRSLARE---LGGRGITVNAIAPGLTATEATAY--------VPADERHAYYLKGR 210
ChcA_like_SDR_c cd05359
1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup ...
39-202 1.69e-12

1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187617 [Multi-domain]  Cd Length: 242  Bit Score: 65.07  E-value: 1.69e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDI----------NKVKKEVGDVTIV 81
Cdd:cd05359    1 ALVTGGSRGIGKAIALRLAERgadvvinyrkskdaaaevaaeieelggKAVVVRADVsqpqdveemfAAVKERFGRLDVL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05359   81 VSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCAQQAAKLMRERGGGRIVAISSLGSIRALPNYLAVGTAKAALEALVR 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 210032112 162 GLTSElqaLGKTGIKTSCLCPVFVNTGFTK---NPSTRLWPVLE 202
Cdd:cd05359  161 YLAVE---LGPRGIRVNAVSPGVIDTDALAhfpNREDLLEAAAA 201
retinol-DH_like_SDR_c cd09807
retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup ...
36-200 2.29e-12

retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212495 [Multi-domain]  Cd Length: 274  Bit Score: 65.18  E-value: 2.29e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQS--ILVLWDINKVKKEVGD------------------------------------ 77
Cdd:cd09807    1 GKTVIITGANTGIGKETARELARRGArvIMACRDMAKCEEAAAEirrdtlnhevivrhldlaslksirafaaeflaeedr 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGtVYPADLLSTKDEEITKtFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEG-IPY----------- 145
Cdd:cd09807   81 LDVLINNAG-VMRCPYSKTEDGFEMQ-FGVNHLGHFLLTNLLLDLLKKSAPSRIVNVSSLAHKAGkINFddlnseksynt 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 210032112 146 LIPYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKNPSTR-------LWPV 200
Cdd:cd09807  159 GFAYCQSKLANVLFTRELARRLQG---TGVTVNALHPGVVRTELGRHTGIHhlflstlLNPL 217
PRK05866 PRK05866
SDR family oxidoreductase;
34-252 2.34e-12

SDR family oxidoreductase;


Pssm-ID: 235631 [Multi-domain]  Cd Length: 293  Bit Score: 65.53  E-value: 2.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKR--QSILV---------------------------LWDIN-------KVKKEVGD 77
Cdd:PRK05866  38 LTGKRILLTGASSGIGEAAAEQFARRgaTVVAVarredlldavadritraggdamavpcdLSDLDavdalvaDVEKRIGG 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDE--EITKTFEVNILGHFWITKALLPSMMERNHGHIVTVAS--VCGhEGIPYLIPYCSSK 153
Cdd:PRK05866 118 VDILINNAGRSIRRPLAESLDRwhDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATwgVLS-EASPLFSVYNASK 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKnpSTRLW---PVLETDEVVRSLIDGILTNKKMIfVPSYINIF 230
Cdd:PRK05866 197 AALSAVSRVIETE---WGDRGVHSTTLYYPLVATPMIA--PTKAYdglPALTADEAAEWMVTAARTRPVRI-APRVAVAA 270
                        250       260
                 ....*....|....*....|..
gi 210032112 231 LRLQKFLPERASAILNRmQNIQ 252
Cdd:PRK05866 271 RALDSVAPRAVNALMQR-QGEQ 291
PRK12828 PRK12828
short chain dehydrogenase; Provisional
33-187 2.35e-12

short chain dehydrogenase; Provisional


Pssm-ID: 237220 [Multi-domain]  Cd Length: 239  Bit Score: 64.82  E-value: 2.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK----------------------------------VKKEVGDV 78
Cdd:PRK12828   4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAaplsqtlpgvpadalriggidlvdpqaarravdeVNRQFGRL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVG 158
Cdd:PRK12828  84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAAKAGVAR 163
                        170       180
                 ....*....|....*....|....*....
gi 210032112 159 FHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12828 164 LTEALAAE---LLDRGITVNAVLPSIIDT 189
PRK07775 PRK07775
SDR family oxidoreductase;
28-202 2.42e-12

SDR family oxidoreductase;


Pssm-ID: 181113 [Multi-domain]  Cd Length: 274  Bit Score: 65.16  E-value: 2.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  28 PQRRKsvageiVLITGAGHGIGRQTTYEFA--------------KRQSI---------------LVLWDINKVK------ 72
Cdd:PRK07775   8 PDRRP------ALVAGASSGIGAATAIELAaagfpvalgarrveKCEELvdkiradggeavafpLDVTDPDSVKsfvaqa 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 -KEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCS 151
Cdd:PRK07775  82 eEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPHMGAYGA 161
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 210032112 152 SKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKN-PSTRLWPVLE 202
Cdd:PRK07775 162 AKAGLEAMVTNLQMELEG---TGVRASIVHPGPTLTGMGWSlPAEVIGPMLE 210
PRK07985 PRK07985
SDR family oxidoreductase;
40-182 4.13e-12

SDR family oxidoreductase;


Pssm-ID: 181188 [Multi-domain]  Cd Length: 294  Bit Score: 64.63  E-value: 4.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  40 LITGAGHGIGRQTTYEFAK----------------------------RQSILVLWDIN----------KVKKEVGDVTIV 81
Cdd:PRK07985  53 LVTGGDSGIGRAAAIAYARegadvaisylpveeedaqdvkkiieecgRKAVLLPGDLSdekfarslvhEAHKALGGLDIM 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAG--TVYP--ADLLStkdEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK07985 133 ALVAGkqVAIPdiADLTS---EQFQKTFAINVFALFWLTQEAIPLL--PKGASIITTSSIQAYQPSPHLLDYAATKAAIL 207
                        170       180
                 ....*....|....*....|....*
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:PRK07985 208 NYSRGLAKQ---VAEKGIRVNIVAP 229
PRK06935 PRK06935
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
33-191 4.34e-12

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 180761 [Multi-domain]  Cd Length: 258  Bit Score: 64.37  E-value: 4.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVL------WD-----------------------------INKVKKEVGD 77
Cdd:PRK06935  12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIItthgtnWDetrrliekegrkvtfvqvdltkpesaekvVKEALEEFGK 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAV 157
Cdd:PRK06935  92 IDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASKHGVA 171
                        170       180       190
                 ....*....|....*....|....*....|....
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK06935 172 GLTKAFANE---LAAYNIQVNAIAPGYIKTANTA 202
PRK08219 PRK08219
SDR family oxidoreductase;
38-166 4.36e-12

SDR family oxidoreductase;


Pssm-ID: 181298 [Multi-domain]  Cd Length: 227  Bit Score: 63.80  E-value: 4.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVL-------------------W--------DINKVKKEVGDVTIVVNNAGTVYP 90
Cdd:PRK08219   5 TALITGASRGIGAAIARELAPTHTLLLGgrpaerldelaaelpgatpFpvdltdpeAIAAAVEQLGRLDVLVHNAGVADL 84
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 210032112  91 ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMErNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSE 166
Cdd:PRK08219  85 GPVAESTVDEWRATLEVNVVAPAELTRLLLPALRA-AHGHVVFINSGAGLRANPGWGSYAASKFALRALADALREE 159
PRK07067 PRK07067
L-iditol 2-dehydrogenase;
36-187 4.41e-12

L-iditol 2-dehydrogenase;


Pssm-ID: 235925 [Multi-domain]  Cd Length: 257  Bit Score: 64.28  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG--------DVT--------------------IVV 82
Cdd:PRK07067   6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKpararLAALEIGpaaiavslDVTrqdsidrivaaaverfggidILF 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHG-HIVTVASVCGHEGIPYLIPYCSSKfAAVgfhR 161
Cdd:PRK07067  86 NNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGgKIINMASQAGRRGEALVSHYCATK-AAV---I 161
                        170       180
                 ....*....|....*....|....*..
gi 210032112 162 GLT-SELQALGKTGIKTSCLCPVFVNT 187
Cdd:PRK07067 162 SYTqSAALALIRHGINVNAIAPGVVDT 188
PRK05693 PRK05693
SDR family oxidoreductase;
38-214 4.96e-12

SDR family oxidoreductase;


Pssm-ID: 168186 [Multi-domain]  Cd Length: 274  Bit Score: 64.43  E-value: 4.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEF----------AKRQS----------ILVLWDIN----------KVKKEVGDVTIVVNNAGT 87
Cdd:PRK05693   3 VVLITGCSSGIGRALADAFkaagyevwatARKAEdvealaaagfTAVQLDVNdgaalarlaeELEAEHGGLDVLINNAGY 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  88 VYPADLLSTKDEEITKTFEVNILGHFWITKALLPsMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSEL 167
Cdd:PRK05693  83 GAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFP-LLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLEL 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 210032112 168 QALgktGIKTSCLCPVFVNTGFTKNPSTRLWPVLETDEVVRSLIDGI 214
Cdd:PRK05693 162 APF---GVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHI 205
PRK07326 PRK07326
SDR family oxidoreductase;
33-193 5.70e-12

SDR family oxidoreductase;


Pssm-ID: 235990 [Multi-domain]  Cd Length: 237  Bit Score: 63.49  E-value: 5.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKrQSILV----------------LWDINKVKKEVGDVT----------------- 79
Cdd:PRK07326   3 SLKGKVALITGGSKGIGFAIAEALLA-EGYKVaitardqkeleeaaaeLNNKGNVLGLAADVRdeadvqravdaivaafg 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ---IVVNNAGTVY--PADLLStkDEEITKTFEVNILGHFWITKALLPSMmERNHGHIVTVASVCGHEGIPYLIPYCSSKF 154
Cdd:PRK07326  82 gldVLIANAGVGHfaPVEELT--PEEWRLVIDTNLTGAFYTIKAAVPAL-KRGGGYIINISSLAGTNFFAGGAAYNASKF 158
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 210032112 155 AAVGFHRGLtseLQALGKTGIKTSCLCPVFVNTGFTKNP 193
Cdd:PRK07326 159 GLVGFSEAA---MLDLRQYGIKVSTIMPGSVATHFNGHT 194
PRK07201 PRK07201
SDR family oxidoreductase;
28-173 8.04e-12

SDR family oxidoreductase;


Pssm-ID: 235962 [Multi-domain]  Cd Length: 657  Bit Score: 64.97  E-value: 8.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  28 PQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLW--------------------------DINK----------V 71
Cdd:PRK07201 363 RDLRGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVarngealdelvaeirakggtahaytcDLTDsaavdhtvkdI 442
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  72 KKEVGDVTIVVNNAG-TVYPADLLSTK---DEEitKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK07201 443 LAEHGHVDYLVNNAGrSIRRSVENSTDrfhDYE--RTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFS 520
                        170       180
                 ....*....|....*....|....*.
gi 210032112 148 PYCSSKFAAVGFHRGLTSELQALGKT 173
Cdd:PRK07201 521 AYVASKAALDAFSDVAASETLSDGIT 546
BKR_2_SDR_c cd05349
putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) ...
37-182 9.44e-12

putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR; This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187607 [Multi-domain]  Cd Length: 246  Bit Score: 63.25  E-value: 9.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTTYEFAK------------------------RQSILVLWD----------INKVKKEVGDVTIVV 82
Cdd:cd05349    1 QVVLVTGASRGLGAAIARSFARegarvvvnyyrstesaeavaaeagERAIAIQADvrdrdqvqamIEEAKNHFGPVDTIV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKD-EEIT-----KTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:cd05349   81 NNALIDFPFDPDQRKTfDTIDwedyqQQLEGAVKGALNLLQAVLPDFKERGSGRVINIGTNLFQNPVVPYHDYTTAKAAL 160
                        170       180
                 ....*....|....*....|....*.
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd05349  161 LGFTRNMAKE---LGPYGITVNMVSG 183
PRK06057 PRK06057
short chain dehydrogenase; Provisional
27-193 1.01e-11

short chain dehydrogenase; Provisional


Pssm-ID: 180371 [Multi-domain]  Cd Length: 255  Bit Score: 63.21  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  27 IPQRrksVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG------DVT---------------- 79
Cdd:PRK06057   1 LSQR---LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDpeagkAAADEVGglfvptDVTdedavnalfdtaaety 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ----IVVNNAGTVYPAD--LLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEG-IPYLIPYCSS 152
Cdd:PRK06057  78 gsvdIAFNNAGISPPEDdsILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGsATSQISYTAS 157
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 210032112 153 KFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTG-----FTKNP 193
Cdd:PRK06057 158 KGGVLAMSRELGVQ---FARQGIRVNALCPGPVNTPllqelFAKDP 200
PRK09242 PRK09242
SDR family oxidoreductase;
29-202 1.05e-11

SDR family oxidoreductase;


Pssm-ID: 181721 [Multi-domain]  Cd Length: 257  Bit Score: 63.23  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  29 QRRKSVAGEIVLITGAGHGIGRQTTYEFAK-------------------------------------------RQSILvl 65
Cdd:PRK09242   2 QHRWRLDGQTALITGASKGIGLAIAREFLGlgadvlivardadalaqardelaeefperevhglaadvsddedRRAIL-- 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  66 wdiNKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPY 145
Cdd:PRK09242  80 ---DWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRS 156
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 146 LIPYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVFVNTGFTKNPST---RLWPVLE 202
Cdd:PRK09242 157 GAPYGMTKAALLQMTRNLAVEWAE---DGIRVNAVAPWYIRTPLTSGPLSdpdYYEQVIE 213
PLN02253 PLN02253
xanthoxin dehydrogenase
36-188 1.24e-11

xanthoxin dehydrogenase


Pssm-ID: 177895 [Multi-domain]  Cd Length: 280  Bit Score: 63.30  E-value: 1.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDI-----NKVKKEVG----------DVT--------------------I 80
Cdd:PLN02253  18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLqddlgQNVCDSLGgepnvcffhcDVTveddvsravdftvdkfgtldI 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYP--ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGheGIPYLIP--YCSSKFAA 156
Cdd:PLN02253  98 MVNNAGLTGPpcPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVAS--AIGGLGPhaYTGSKHAV 175
                        170       180       190
                 ....*....|....*....|....*....|..
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCPVFVNTG 188
Cdd:PLN02253 176 LGLTRSVAAE---LGKHGIRVNCVSPYAVPTA 204
fabG PRK06463
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
36-233 1.98e-11

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180576 [Multi-domain]  Cd Length: 255  Bit Score: 62.49  E-value: 1.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQS-ILVLWD------------------------------INKVKKEVGDVTIVVNN 84
Cdd:PRK06463   7 GKVALITGGTRGIGRAIAEAFLREGAkVAVLYNsaeneakelrekgvftikcdvgnrdqvkksKEVVEKEFGRVDVLVNN 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  85 AGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG----HEGIPYlipYCSSKFAAVGFH 160
Cdd:PRK06463  87 AGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGigtaAEGTTF---YAITKAGIIILT 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 210032112 161 RGLTSElqaLGKTGIKTSCLCPVFVNTGFT---KNPStrlwpvlETDEVVRSLIDGilTNKKMIFVPSYI-NIFLRL 233
Cdd:PRK06463 164 RRLAFE---LGKYGIRVNAVAPGWVETDMTlsgKSQE-------EAEKLRELFRNK--TVLKTTGKPEDIaNIVLFL 228
DHB_DH-like_SDR_c cd08937
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; ...
36-167 2.58e-11

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187642 [Multi-domain]  Cd Length: 256  Bit Score: 62.16  E-value: 2.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVKKEV-----------------------------------GDVTI 80
Cdd:cd08937    4 GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRSELVHEVlaeilaagdaahvhtadletyagaqgvvraaverfGRVDV 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAG-TVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGipYLIPYCSSKfaavGF 159
Cdd:cd08937   84 LINNVGgTIWAKPYEHYEEEQIEAEIRRSLFPTLWCCRAVLPHMLERQQGVIVNVSSIATRGI--YRIPYSAAK----GG 157

                 ....*...
gi 210032112 160 HRGLTSEL 167
Cdd:cd08937  158 VNALTASL 165
PRK07814 PRK07814
SDR family oxidoreductase;
31-155 2.75e-11

SDR family oxidoreductase;


Pssm-ID: 181131 [Multi-domain]  Cd Length: 263  Bit Score: 62.10  E-value: 2.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAK--------------------------RQSILVLWDI----------NKVKKE 74
Cdd:PRK07814   5 RFRLDDQVAVVTGAGRGLGAAIALAFAEagadvliaartesqldevaeqiraagRRAHVVAADLahpeataglaGQAVEA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  75 VGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK07814  85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSgGGSVINISSTMGRLAGRGFAAYGTAK 164

                 ..
gi 210032112 154 FA 155
Cdd:PRK07814 165 AA 166
PRK06398 PRK06398
aldose dehydrogenase; Validated
36-187 3.48e-11

aldose dehydrogenase; Validated


Pssm-ID: 235794 [Multi-domain]  Cd Length: 258  Bit Score: 61.77  E-value: 3.48e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWD-------------------------INKVKKEVGDVTIVVNNAGTVYP 90
Cdd:PRK06398   6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDikepsyndvdyfkvdvsnkeqvikgIDYVISKYGRIDILVNNAGIESY 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  91 ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQAL 170
Cdd:PRK06398  86 GAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKHAVLGLTRSIAVDYAPT 165
                        170
                 ....*....|....*..
gi 210032112 171 gktgIKTSCLCPVFVNT 187
Cdd:PRK06398 166 ----IRCVAVCPGSIRT 178
PRK12938 PRK12938
3-ketoacyl-ACP reductase;
54-191 3.86e-11

3-ketoacyl-ACP reductase;


Pssm-ID: 171822 [Multi-domain]  Cd Length: 246  Bit Score: 61.57  E-value: 3.86e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  54 YEFAKRQSILVLWD-----INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH 128
Cdd:PRK12938  53 FDFIASEGNVGDWDstkaaFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGW 132
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 210032112 129 GHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK12938 133 GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQE---VATKGVTVNTVSPGYIGTDMVK 192
TR_SDR_c cd05329
tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup ...
31-212 4.24e-11

tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187590 [Multi-domain]  Cd Length: 251  Bit Score: 61.31  E-value: 4.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN----------------KVKKEVGDVT--------------- 79
Cdd:cd05329    1 RWNLEGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNqkeldecltewrekgfKVEGSVCDVSsrserqelmdtvash 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ------IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:cd05329   81 fggklnILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAAYHLSRLAHPLLKASGNGNIVFISSVAGVIAVPSGAPYGATK 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKnpstrlwPVLETDEVVRSLID 212
Cdd:cd05329  161 GALNQLTRSLACE---WAKDNIRVNAVAPWVIATPLVE-------PVIQQKENLDKVIE 209
PRK06194 PRK06194
hypothetical protein; Provisional
35-188 4.35e-11

hypothetical protein; Provisional


Pssm-ID: 180458 [Multi-domain]  Cd Length: 287  Bit Score: 61.57  E-value: 4.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK------------------------------------VKKEVGDV 78
Cdd:PRK06194   5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQdaldravaelraqgaevlgvrtdvsdaaqvealadaALERFGAV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGtVYPADLL---STKDEEITktFEVNILGHFWITKALLPSMMERN------HGHIVTVASVCGHEGIPYLIPY 149
Cdd:PRK06194  85 HLLFNNAG-VGAGGLVwenSLADWEWV--LGVNLWGVIHGVRAFTPLMLAAAekdpayEGHIVNTASMAGLLAPPAMGIY 161
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 210032112 150 CSSKFAAVGFHRGLTSELQALGkTGIKTSCLCPVFVNTG 188
Cdd:PRK06194 162 NVSKHAVVSLTETLYQDLSLVT-DQVGASVLCPYFVPTG 199
PRK07577 PRK07577
SDR family oxidoreductase;
38-173 4.43e-11

SDR family oxidoreductase;


Pssm-ID: 181044 [Multi-domain]  Cd Length: 234  Bit Score: 61.28  E-value: 4.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKR----------------------------QSILVLWDINkvkkEVGDVTIVVNNAGTVY 89
Cdd:PRK07577   5 TVLVTGATKGIGLALSLRLANLghqvigiarsaiddfpgelfacdladieQTAATLAQIN----EIHPVDAIVNNVGIAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  90 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHeGIPYLIPYCSSKFAAVGFHRGLTSELQA 169
Cdd:PRK07577  81 PQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIF-GALDRTSYSAAKSALVGCTRTWALELAE 159

                 ....
gi 210032112 170 LGKT 173
Cdd:PRK07577 160 YGIT 163
PRK06949 PRK06949
SDR family oxidoreductase;
36-187 5.97e-11

SDR family oxidoreductase;


Pssm-ID: 180773 [Multi-domain]  Cd Length: 258  Bit Score: 60.93  E-value: 5.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVL-----------------------------WDINKVKK-------EVGDVT 79
Cdd:PRK06949   9 GKVALVTGASSGLGARFAQVLAQAGAKVVLasrrverlkelraeieaeggaahvvsldvTDYQSIKAavahaetEAGTID 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHG--------HIVTVASVCGHEGIPYLIPYCS 151
Cdd:PRK06949  89 ILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGagntkpggRIINIASVAGLRVLPQIGLYCM 168
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 210032112 152 SKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06949 169 SKAAVVHMTRAMALE---WGRHGINVNAICPGYIDT 201
PLN02780 PLN02780
ketoreductase/ oxidoreductase
23-209 6.02e-11

ketoreductase/ oxidoreductase


Pssm-ID: 166421 [Multi-domain]  Cd Length: 320  Bit Score: 61.42  E-value: 6.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  23 VKFFIPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVL--------------------------------WDIN- 69
Cdd:PLN02780  40 VYFLRPAKNLKKYGSWALVTGPTDGIGKGFAFQLARKGLNLVLvarnpdklkdvsdsiqskysktqiktvvvdfsGDIDe 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  70 ---KVKKEVG--DVTIVVNNAGTVYP-ADLLSTKDEEITKTF-EVNILGHFWITKALLPSMMERNHGHIVTVASvcgheG 142
Cdd:PLN02780 120 gvkRIKETIEglDVGVLINNVGVSYPyARFFHEVDEELLKNLiKVNVEGTTKVTQAVLPGMLKRKKGAIINIGS-----G 194
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 210032112 143 IPYLIP-------YCSSKFAAVGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTKNPSTRLWpVLETDEVVRS 209
Cdd:PLN02780 195 AAIVIPsdplyavYAATKAYIDQFSRCLYVEYK---KSGIDVQCQVPLYVATKMASIRRSSFL-VPSSDGYARA 264
PRK07478 PRK07478
short chain dehydrogenase; Provisional
36-210 7.29e-11

short chain dehydrogenase; Provisional


Pssm-ID: 180993 [Multi-domain]  Cd Length: 254  Bit Score: 60.71  E-value: 7.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK----------RQSIL--VLWDINKVKKEV----GDVT-------------------- 79
Cdd:PRK07478   6 GKVAIITGASSGIGRAAAKLFARegakvvvgarRQAELdqLVAEIRAEGGEAvalaGDVRdeayakalvalaverfggld 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYP-ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHE-GIPYLIPYCSSKFAAV 157
Cdd:PRK07478  86 IAFNNAGTLGEmGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTaGFPGMAAYAASKAGLI 165
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 210032112 158 GFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPStrlwPVLETDEVVRSL 210
Cdd:PRK07478 166 GLTQVLAAE---YGAQGIRVNALLPGGTDTPMGRAMG----DTPEALAFVAGL 211
PRK08945 PRK08945
putative oxoacyl-(acyl carrier protein) reductase; Provisional
36-182 7.95e-11

putative oxoacyl-(acyl carrier protein) reductase; Provisional


Pssm-ID: 236357 [Multi-domain]  Cd Length: 247  Bit Score: 60.66  E-value: 7.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLwdINKVKKEVGDVTIVVNNAG----TVYPADLLSTKDEE-------ITKT 104
Cdd:PRK08945  12 DRIILVTGAGDGIGREAALTYARHGATVIL--LGRTEEKLEAVYDEIEAAGgpqpAIIPLDLLTATPQNyqqladtIEEQ 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 105 F-------------------------------EVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK08945  90 FgrldgvlhnagllgelgpmeqqdpevwqdvmQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAVSK 169
                        170       180
                 ....*....|....*....|....*....
gi 210032112 154 FAAVGFHRGLTSELQalgKTGIKTSCLCP 182
Cdd:PRK08945 170 FATEGMMQVLADEYQ---GTNLRVNCINP 195
Ycik_SDR_c cd05340
Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related ...
34-188 8.57e-11

Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187599 [Multi-domain]  Cd Length: 236  Bit Score: 60.28  E-value: 8.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAK---------------------------RQSILVLWDI------------NKVKKE 74
Cdd:cd05340    2 LNDRIILVTGASDGIGREAALTYARygatvillgrneeklrqvadhineeggRQPQWFILDLltctsencqqlaQRIAVN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  75 VGDVTIVVNNAGTVYPADLLSTKDEEITKT-FEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:cd05340   82 YPRLDGVLHNAGLLGDVCPLSEQNPQVWQDv*QVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAVSK 161
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 154 FAAVGFHRGLTSELQalgKTGIKTSCLCPVFVNTG 188
Cdd:cd05340  162 FATEGL*QVLADEYQ---QRNLRVNCINPGGTRTA 193
PRK06182 PRK06182
short chain dehydrogenase; Validated
38-189 1.51e-10

short chain dehydrogenase; Validated


Pssm-ID: 180448 [Multi-domain]  Cd Length: 273  Bit Score: 59.97  E-value: 1.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTT----------YEFAKR----------------------QSILVLwdINKVKKEVGDVTIVVNNA 85
Cdd:PRK06182   5 VALVTGASSGIGKATArrlaaqgytvYGAARRvdkmedlaslgvhplsldvtdeASIKAA--VDTIIAEEGRIDVLVNNA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  86 G-TVYPAdLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLT 164
Cdd:PRK06182  83 GyGSYGA-IEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEGFSDALR 161
                        170       180
                 ....*....|....*....|....*
gi 210032112 165 SELQALgktGIKTSCLCPVFVNTGF 189
Cdd:PRK06182 162 LEVAPF---GIDVVVIEPGGIKTEW 183
DHRS1_HSDL2-like_SDR_c cd05338
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid ...
35-183 1.96e-10

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187597 [Multi-domain]  Cd Length: 246  Bit Score: 59.33  E-value: 1.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKR--------------------------------------QSILVLWD--------- 67
Cdd:cd05338    2 SGKVAFVTGASRGIGRAIALRLAKAgatvvvaaktasegdngsakslpgtieetaeeieaaggQALPIVVDvrdedqvra 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 -INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYL 146
Cdd:cd05338   82 lVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRFDLMQRVNLRGTYLLSQAALPHMVKAGQGHILNISPPLSLRPARGD 161
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 147 IPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPV 183
Cdd:cd05338  162 VAYAAGKAGMSRLTLGLAAE---LRRHGIAVNSLWPS 195
PRK06198 PRK06198
short chain dehydrogenase; Provisional
35-161 2.40e-10

short chain dehydrogenase; Provisional


Pssm-ID: 180462 [Multi-domain]  Cd Length: 260  Bit Score: 59.25  E-value: 2.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDINKVK----------KEVGD 77
Cdd:PRK06198   5 DGKVALVTGGTQGLGAAIARAFAERgaaglvicgrnaekgeaqaaelealgaKAVFVQADLSDVEdcrrvvaaadEAFGR 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK06198  85 LDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKaEGTIVNIGSMSAHGGQPFLAAYCASKGAL 164

                 ....*
gi 210032112 157 VGFHR 161
Cdd:PRK06198 165 ATLTR 169
SDR_c10 cd05373
classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an ...
68-168 2.63e-10

classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187631 [Multi-domain]  Cd Length: 238  Bit Score: 58.93  E-value: 2.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIV---TVASVCGHEGip 144
Cdd:cd05373   68 FDLIEEEIGPLEVLVYNAGANVWFPILETTPRVFEKVWEMAAFGGFLAAREAAKRMLARGRGTIIftgATASLRGRAG-- 145
                         90       100
                 ....*....|....*....|....
gi 210032112 145 yLIPYCSSKFAAVGFHRGLTSELQ 168
Cdd:cd05373  146 -FAAFAGAKFALRALAQSMARELG 168
PRK07024 PRK07024
SDR family oxidoreductase;
38-193 4.18e-10

SDR family oxidoreductase;


Pssm-ID: 235910 [Multi-domain]  Cd Length: 257  Bit Score: 58.40  E-value: 4.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVL----------W-----DINKVKKEVGDVT--------------------IVV 82
Cdd:PRK07024   4 KVFITGASSGIGQALAREYARQGATLGLvarrtdalqaFaarlpKAARVSVYAADVRdadalaaaaadfiaahglpdVVI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAG------TVYPADLlstkdEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK07024  84 ANAGisvgtlTEEREDL-----AVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAA 158
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 210032112 157 VGFHRGLTSELQalgKTGIKTSCLCPVFVNTGFTK-NP 193
Cdd:PRK07024 159 IKYLESLRVELR---PAGVRVVTIAPGYIRTPMTAhNP 193
A3DFK9-like_SDR_c cd09761
Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, ...
36-187 5.36e-10

Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs; This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187662 [Multi-domain]  Cd Length: 242  Bit Score: 57.97  E-value: 5.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK----------------VKKEVGDVTIV-----------------V 82
Cdd:cd09761    1 GKVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEergadfaeaegpnlffVHGDVADETLVkfvvyamleklgridvlV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVgfhrG 162
Cdd:cd09761   81 NNAARGSKGILSSLLLEEWDRILSVNLTGPYELSRYCRDELI-KNKGRIINIASTRAFQSEPDSEAYAASKGGLV----A 155
                        170       180
                 ....*....|....*....|....*
gi 210032112 163 LTSELQALGKTGIKTSCLCPVFVNT 187
Cdd:cd09761  156 LTHALAMSLGPDIRVNCISPGWINT 180
PRK07074 PRK07074
SDR family oxidoreductase;
38-187 8.12e-10

SDR family oxidoreductase;


Pssm-ID: 180823 [Multi-domain]  Cd Length: 257  Bit Score: 57.86  E-value: 8.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDIN----------------------------------KVKKEVGDVTIVVN 83
Cdd:PRK07074   4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDaaalaafadalgdarfvpvacdltdaaslaaalaNAAAERGPVDVLVA 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHE--GIPyliPYCSSKFAAVGFHR 161
Cdd:PRK07074  84 NAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAalGHP---AYSAAKAGLIHYTK 160
                        170       180
                 ....*....|....*....|....*.
gi 210032112 162 GLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK07074 161 LLAVE---YGRFGIRANAVAPGTVKT 183
PRK08589 PRK08589
SDR family oxidoreductase;
37-187 1.40e-09

SDR family oxidoreductase;


Pssm-ID: 181491 [Multi-domain]  Cd Length: 272  Bit Score: 57.10  E-value: 1.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----------------------------------KVKKEVGDVTIV 81
Cdd:PRK08589   7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAeavsetvdkiksnggkakayhvdisdeqqvkdfasEIKEQFGRVDVL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGT--------VYPADLLStkdeeitKTFEVNILGHFWITKALLPSMMErNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK08589  87 FNNAGVdnaagrihEYPVDVFD-------KIMAVDMRGTFLMTKMLLPLMME-QGGSIINTSSFSGQAADLYRSGYNAAK 158
                        170       180       190
                 ....*....|....*....|....*....|....
gi 210032112 154 FAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK08589 159 GAVINFTKSIAIE---YGRDGIRANAIAPGTIET 189
PRK07774 PRK07774
SDR family oxidoreductase;
35-214 1.41e-09

SDR family oxidoreductase;


Pssm-ID: 236094 [Multi-domain]  Cd Length: 250  Bit Score: 57.06  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEV-------------------------------GDV 78
Cdd:PRK07774   5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINaegaeRVAKQIvadggtaiavqvdvsdpdsakamadatvsafGGI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGtVY---PADLLSTKDEEITKTF-EVNILGHFWITKALLPSMMERNHGHIVTVASVCgheGIPYLIPYCSSKF 154
Cdd:PRK07774  85 DYLVNNAA-IYggmKLDLLITVPWDYYKKFmSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTA---AWLYSNFYGLAKV 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 155 AAVGFHRGLTSElqaLGKTGIKTSCLCPvfvntGFTKNPSTRlwpVLETDEVVRSLIDGI 214
Cdd:PRK07774 161 GLNGLTQQLARE---LGGMNIRVNAIAP-----GPIDTEATR---TVTPKEFVADMVKGI 209
fabG PRK06077
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
33-187 1.69e-09

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235693 [Multi-domain]  Cd Length: 252  Bit Score: 56.65  E-value: 1.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWD----------INKVKKEV 75
Cdd:PRK06077   3 SLKDKVVVVTGSGRGIGRAIAVRLAKEgslvvvnakkraeemnetlkmvkenggEGIGVLADvstregcetlAKATIDRY 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK06077  83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEM--REGGAIVNIASVAGIRPAYGLSIYGAMKAA 160
                        170       180       190
                 ....*....|....*....|....*....|..
gi 210032112 156 AVGFHRGLTSELqalgKTGIKTSCLCPVFVNT 187
Cdd:PRK06077 161 VINLTKYLALEL----APKIRVNAIAPGFVKT 188
PRK07035 PRK07035
SDR family oxidoreductase;
70-193 5.28e-09

SDR family oxidoreductase;


Pssm-ID: 180802 [Multi-domain]  Cd Length: 252  Bit Score: 55.41  E-value: 5.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  70 KVKKEVGDVTIVVNNAGT-VYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG-----HEGI 143
Cdd:PRK07035  78 HIRERHGRLDILVNNAAAnPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGvspgdFQGI 157
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 210032112 144 pylipYCSSKFAAVGFHRGLTSELQALgktGIKTSCLCPVFVNTGF----TKNP 193
Cdd:PRK07035 158 -----YSITKAAVISMTKAFAKECAPF---GIRVNALLPGLTDTKFasalFKND 203
PRK06139 PRK06139
SDR family oxidoreductase;
30-167 6.15e-09

SDR family oxidoreductase;


Pssm-ID: 235713 [Multi-domain]  Cd Length: 330  Bit Score: 55.50  E-value: 6.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  30 RRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVK--------KEVG--------DVT-------------- 79
Cdd:PRK06139   1 MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEAlqavaeecRALGaevlvvptDVTdadqvkalatqaas 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ------IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSK 153
Cdd:PRK06139  81 fggridVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASK 160
                        170
                 ....*....|....
gi 210032112 154 FAAVGFHRGLTSEL 167
Cdd:PRK06139 161 FGLRGFSEALRGEL 174
PRK06101 PRK06101
SDR family oxidoreductase;
39-247 6.16e-09

SDR family oxidoreductase;


Pssm-ID: 180399 [Multi-domain]  Cd Length: 240  Bit Score: 54.88  E-value: 6.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVLWDINK-VKKEVG-----------DVT-----------------IVVNNAGTVY 89
Cdd:PRK06101   4 VLITGATSGIGKQLALDYAKQGWQVIACGRNQsVLDELHtqsaniftlafDVTdhpgtkaalsqlpfipeLWIFNAGDCE 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  90 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMmERNHgHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQa 169
Cdd:PRK06101  84 YMDDGKVDATLMARVFNVNVLGVANCIEGIQPHL-SCGH-RVVIVGSIASELALPRAEAYGASKAAVAYFARTLQLDLR- 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 210032112 170 lgKTGIKTSCLCPVFVNTGFTKNPSTRLWPVLETDEVVRSLIDGILTNKKMIFVPSYINIFLRLQKFLPERASAILNR 247
Cdd:PRK06101 161 --PKGIEVVTVFPGFVATPLTDKNTFAMPMIITVEQASQEIRAQLARGKSHIYFPARFTWLIRLLGLLPYAWQGRLVR 236
PRK06114 PRK06114
SDR family oxidoreductase;
33-193 6.36e-09

SDR family oxidoreductase;


Pssm-ID: 180408 [Multi-domain]  Cd Length: 254  Bit Score: 55.17  E-value: 6.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAK---------------------------RQSILVLWD----------INKVKKEV 75
Cdd:PRK06114   5 DLDGQVAFVTGAGSGIGQRIAIGLAQagadvalfdlrtddglaetaehieaagRRAIQIAADvtskadlraaVARTEAEL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG---HEGIPYlIPYCSS 152
Cdd:PRK06114  85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGiivNRGLLQ-AHYNAS 163
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 210032112 153 KFAAVGFHRGLTSELqaLGKtGIKTSCLCPvfvntGFTKNP 193
Cdd:PRK06114 164 KAGVIHLSKSLAMEW--VGR-GIRVNSISP-----GYTATP 196
HSD10-like_SDR_c cd05371
17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as ...
36-187 7.05e-09

17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187629 [Multi-domain]  Cd Length: 252  Bit Score: 54.99  E-value: 7.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------KVKKEVGDVT--------------------IVVN 83
Cdd:cd05371    2 GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPnspgetvaklgdNCRFVPVDVTsekdvkaalalakakfgrldIVVN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 NAGTVYPADLLSTKD------EEITKTFEVNILGHFWITKALLPSMM--------ERnhGHIVTVASVCGHEGIPYLIPY 149
Cdd:cd05371   82 CAGIAVAAKTYNKKGqqphslELFQRVINVNLIGTFNVIRLAAGAMGknepdqggER--GVIINTASVAAFEGQIGQAAY 159
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 210032112 150 CSSKFAAVgfhrGLTSEL-QALGKTGIKTSCLCPVFVNT 187
Cdd:cd05371  160 SASKGGIV----GMTLPIaRDLAPQGIRVVTIAPGLFDT 194
PRK10538 PRK10538
bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ...
38-139 7.68e-09

bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;


Pssm-ID: 182531 [Multi-domain]  Cd Length: 248  Bit Score: 54.76  E-value: 7.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAK----------RQSILvlwdiNKVKKEVGD----------------------------VT 79
Cdd:PRK10538   2 IVLVTGATAGFGECITRRFIQqghkviatgrRQERL-----QELKDELGDnlyiaqldvrnraaieemlaslpaewrnID 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 210032112  80 IVVNNAGTVY---PADLLSTKDEEITktFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG 139
Cdd:PRK10538  77 VLVNNAGLALglePAHKASVEDWETM--IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAG 137
PRK08251 PRK08251
SDR family oxidoreductase;
39-248 8.13e-09

SDR family oxidoreductase;


Pssm-ID: 181324 [Multi-domain]  Cd Length: 248  Bit Score: 54.56  E-value: 8.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILVL----------------------------WDIN------KV----KKEVGDVTI 80
Cdd:PRK08251   5 ILITGASSGLGAGMAREFAAKGRDLALcarrtdrleelkaellarypgikvavaaLDVNdhdqvfEVfaefRDELGGLDR 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIP-YLIPYCSSKFAAVGF 159
Cdd:PRK08251  85 VIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPgVKAAYAASKAGVASL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 160 HRGLTSELQalgKTGIKTSCLCPVFVNTGFT-KNPSTRLwpVLETDEVVRSLIDGILTNKKMIFVPSY-INIFLRLQKFL 237
Cdd:PRK08251 165 GEGLRAELA---KTPIKVSTIEPGYIRSEMNaKAKSTPF--MVDTETGVKALVKAIEKEPGRAAVPWWpWAPLGALMRVL 239
                        250
                 ....*....|.
gi 210032112 238 PERasaILNRM 248
Cdd:PRK08251 240 PLR---LVRKF 247
PRK06125 PRK06125
short chain dehydrogenase; Provisional
35-134 9.63e-09

short chain dehydrogenase; Provisional


Pssm-ID: 235703 [Multi-domain]  Cd Length: 259  Bit Score: 54.66  E-value: 9.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLW---------------------------------DINKVKKEVGDVTIV 81
Cdd:PRK06125   6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVardadalealaadlraahgvdvavhaldlsspeAREQLAAEAGDIDIL 85
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 210032112  82 VNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTV 134
Cdd:PRK06125  86 VNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNV 138
PRK06200 PRK06200
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
36-167 9.67e-09

2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional


Pssm-ID: 235739 [Multi-domain]  Cd Length: 263  Bit Score: 54.58  E-value: 9.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAK---RQSILVLwDINKVKK-----------EVGDVT--------------------IV 81
Cdd:PRK06200   6 GQVALITGGGSGIGRALVERFLAegaRVAVLER-SAEKLASlrqrfgdhvlvVEGDVTsyadnqravdqtvdafgkldCF 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGtVY---------PADLLSTKDEEItktFEVNILGHFWITKALLPSMMERNhGHIVTVASVCGH---EGIPyliPY 149
Cdd:PRK06200  85 VGNAG-IWdyntslvdiPAETLDTAFDEI---FNVNVKGYLLGAKAALPALKASG-GSMIFTLSNSSFypgGGGP---LY 156
                        170
                 ....*....|....*...
gi 210032112 150 CSSKFAAVGFHRGLTSEL 167
Cdd:PRK06200 157 TASKHAVVGLVRQLAYEL 174
PRK05993 PRK05993
SDR family oxidoreductase;
105-192 1.41e-08

SDR family oxidoreductase;


Pssm-ID: 180343 [Multi-domain]  Cd Length: 277  Bit Score: 54.26  E-value: 1.41e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 105 FEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCPVF 184
Cdd:PRK05993 104 FEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLTLRMELQG---SGIHVSLIEPGP 180

                 ....*...
gi 210032112 185 VNTGFTKN 192
Cdd:PRK05993 181 IETRFRAN 188
PRK08017 PRK08017
SDR family oxidoreductase;
83-192 1.44e-08

SDR family oxidoreductase;


Pssm-ID: 181198 [Multi-domain]  Cd Length: 256  Bit Score: 53.94  E-value: 1.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRG 162
Cdd:PRK08017  80 NNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDA 159
                         90       100       110
                 ....*....|....*....|....*....|
gi 210032112 163 LTSELQalgKTGIKTSCLCPVFVNTGFTKN 192
Cdd:PRK08017 160 LRMELR---HSGIKVSLIEPGPIRTRFTDN 186
BphB-like_SDR_c cd05348
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2, ...
36-167 1.54e-08

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187606 [Multi-domain]  Cd Length: 257  Bit Score: 53.89  E-value: 1.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEF-------------AKRQSILVLWDINKVKKEVGDVT--------------------IVV 82
Cdd:cd05348    4 GEVALITGGGSGLGRALVERFvaegakvavldrsAEKVAELRADFGDAVVGVEGDVRsladneravarcverfgkldCFI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTV-YPADLLSTKDEEITKTFE----VNILGHFWITKALLPSMMERNhGHIVTVASVCGHE---GIPYlipYCSSKF 154
Cdd:cd05348   84 GNAGIWdYSTSLVDIPEEKLDEAFDelfhINVKGYILGAKAALPALYATE-GSVIFTVSNAGFYpggGGPL---YTASKH 159
                        170
                 ....*....|...
gi 210032112 155 AAVGFHRGLTSEL 167
Cdd:cd05348  160 AVVGLVKQLAYEL 172
TER_DECR_SDR_a cd05369
Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER ...
35-182 1.78e-08

Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187627 [Multi-domain]  Cd Length: 249  Bit Score: 53.74  E-value: 1.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAK----------RQSIL--------------VLW---DINK---VK-------KEVGD 77
Cdd:cd05369    2 KGKVAFITGGGTGIGKAIAKAFAElgasvaiagrKPEVLeaaaeeissatggrAHPiqcDVRDpeaVEaavdetlKEFGK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLlstkdEEIT----KT-FEVNILGHFWITKALLPSMMER-NHGHIVTVASVCGHEGIPYLIPYCS 151
Cdd:cd05369   82 IDILINNAAGNFLAPA-----ESLSpngfKTvIDIDLNGTFNTTKAVGKRLIEAkHGGSILNISATYAYTGSPFQVHSAA 156
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 152 SKFAAVGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd05369  157 AKAGVDALTRSLAVE---WGPYGIRVNAIAP 184
PRK06113 PRK06113
7-alpha-hydroxysteroid dehydrogenase; Validated
36-187 2.13e-08

7-alpha-hydroxysteroid dehydrogenase; Validated


Pssm-ID: 135765 [Multi-domain]  Cd Length: 255  Bit Score: 53.70  E-value: 2.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----------------------VKKEV-------------GDVT 79
Cdd:PRK06113  11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINAdaanhvvdeiqqlggqafacrcdITSEQelsaladfalsklGKVD 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEItKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:PRK06113  91 ILVNNAGGGGPKPFDMPMADFR-RAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHL 169
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06113 170 VRNMAFD---LGEKNIRVNGIAPGAILT 194
SDH_SDR_c cd05363
Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter ...
36-187 2.22e-08

Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187621 [Multi-domain]  Cd Length: 254  Bit Score: 53.39  E-value: 2.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVG--------DVT--------------------IVV 82
Cdd:cd05363    3 GKTALITGSARGIGRAFAQAYVREGARVAIADINleaarATAAEIGpaacaislDVTdqasidrcvaalvdrwgsidILV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:cd05363   83 NNAALFDLAPIVDITRESYDRLFAINVSGTLFMMQAVARAMIAQGRgGKIINMASQAGRRGEALVGVYCATKAAVISLTQ 162
                        170       180
                 ....*....|....*....|....*.
gi 210032112 162 gltSELQALGKTGIKTSCLCPVFVNT 187
Cdd:cd05363  163 ---SAGLNLIRHGINVNAIAPGVVDG 185
BKR_1_SDR_c cd05337
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) ...
40-190 2.47e-08

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187596 [Multi-domain]  Cd Length: 255  Bit Score: 53.24  E-value: 2.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  40 LITGAGHGIGRQTTYEFAKRQSILVLWD-------------------------------------INKVKKEVGDVTIVV 82
Cdd:cd05337    5 IVTGASRGIGRAIATELAARGFDIAINDlpdddqatevvaevlaagrraiyfqadigelsdhealLDQAWEDFGRLDCLV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  83 NNAGTVYP--ADLLSTKDEEITKTFEVNILGHFWITKALLPSMMER------NHGHIVTVASVCGHEGIPYLIPYCSSKf 154
Cdd:cd05337   85 NNAGIAVRprGDLLDLTEDSFDRLIAINLRGPFFLTQAVARRMVEQpdrfdgPHRSIIFVTSINAYLVSPNRGEYCISK- 163
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 210032112 155 AAVgfhrGLTSELQA--LGKTGIKTSCLCPVFVNTGFT 190
Cdd:cd05337  164 AGL----SMATRLLAyrLADEGIAVHEIRPGLIHTDMT 197
PRK12384 PRK12384
sorbitol-6-phosphate dehydrogenase; Provisional
32-182 2.51e-08

sorbitol-6-phosphate dehydrogenase; Provisional


Pssm-ID: 183489 [Multi-domain]  Cd Length: 259  Bit Score: 53.50  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTtyEFAKRQSILVLwdINKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILG 111
Cdd:PRK12384  40 ANVAQEINAEYGEGMAYGFGA--DATSEQSVLAL--SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVG 115
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 210032112 112 HFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:PRK12384 116 YFLCAREFSRLMIRDGIqGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALD---LAEYGITVHSLML 184
PRK08085 PRK08085
gluconate 5-dehydrogenase; Provisional
33-191 2.67e-08

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181225 [Multi-domain]  Cd Length: 254  Bit Score: 53.22  E-value: 2.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGR----------------QTTYEFAKR----------QSILVLWD----------INKVKKEVG 76
Cdd:PRK08085   6 SLAGKNILITGSAQGIGFllatglaeygaeiiinDITAERAELavaklrqegiKAHAAPFNvthkqeveaaIEHIEKDIG 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  77 DVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:PRK08085  86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASKGAV 165
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK08085 166 KMLTRGMCVE---LARHNIQVNGIAPGYFKTEMTK 197
7_alpha_HSDH_SDR_c cd05365
7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial ...
38-188 2.76e-08

7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187623 [Multi-domain]  Cd Length: 242  Bit Score: 53.34  E-value: 2.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEV-------------------------------GDVTIV 81
Cdd:cd05365    1 VAIVTGGAAGIGKAIAGTLAKAGASVVIADLKsegaeAVAAAIqqaggqaiglecnvtseqdleavvkatvsqfGGITIL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPA-DLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFH 160
Cdd:cd05365   81 VNNAGGGGPKpFDMPMTEEDFEWAFKLNLFSAFRLSQLCAPHMQKAGGGAILNISSMSSENKNVRIAAYGSSKAAVNHMT 160
                        170       180
                 ....*....|....*....|....*...
gi 210032112 161 RGLTSElqaLGKTGIKTSCLCPVFVNTG 188
Cdd:cd05365  161 RNLAFD---LGPKGIRVNAVAPGAVKTD 185
PRK05867 PRK05867
SDR family oxidoreductase;
34-187 2.76e-08

SDR family oxidoreductase;


Pssm-ID: 135631 [Multi-domain]  Cd Length: 253  Bit Score: 53.11  E-value: 2.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  34 VAGEIVLITGAGHGIGRQTTYEFAKR-----------QSILVLWD-------------------------INKVKKEVGD 77
Cdd:PRK05867   7 LHGKRALITGASTGIGKRVALAYVEAgaqvaiaarhlDALEKLADeigtsggkvvpvccdvsqhqqvtsmLDQVTAELGG 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGH-EGIPYLIP-YCSSKF 154
Cdd:PRK05867  87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQgGVIINTASMSGHiINVPQQVShYCASKA 166
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 155 AAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK05867 167 AVIHLTKAMAVE---LAPHKIRVNSVSPGYILT 196
PRK07523 PRK07523
gluconate 5-dehydrogenase; Provisional
68-187 3.78e-08

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 236040 [Multi-domain]  Cd Length: 255  Bit Score: 52.85  E-value: 3.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK07523  78 IDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIA 157
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 210032112 148 PYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK07523 158 PYTATKGAVGNLTKGMATD---WAKHGLQCNAIAPGYFDT 194
PRK06947 PRK06947
SDR family oxidoreductase;
39-187 4.73e-08

SDR family oxidoreductase;


Pssm-ID: 180771 [Multi-domain]  Cd Length: 248  Bit Score: 52.50  E-value: 4.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDI----------NKVKKEVGDVTIV 81
Cdd:PRK06947   5 VLITGASRGIGRATAVLAAARgwsvginyardaaaaeetadavraaggRACVVAGDVaneadviamfDAVQSAFGRLDAL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKD-EEITKTFEVNILGHFWITKALLPSMMERNHGH---IVTVASVCGHEGIPY-LIPYCSSKFAA 156
Cdd:PRK06947  85 VNNAGIVAPSMPLADMDaARLRRMFDTNVLGAYLCAREAARRLSTDRGGRggaIVNVSSIASRLGSPNeYVDYAGSKGAV 164
                        170       180       190
                 ....*....|....*....|....*....|.
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06947 165 DTLTLGLAKE---LGPHGVRVNAVRPGLIET 192
PRK06482 PRK06482
SDR family oxidoreductase;
40-171 4.74e-08

SDR family oxidoreductase;


Pssm-ID: 235813 [Multi-domain]  Cd Length: 276  Bit Score: 52.81  E-value: 4.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  40 LITGAGHGIGRQTTYEFAKRQSILV-------------------LW-------DINKVKK-------EVGDVTIVVNNAG 86
Cdd:PRK06482   6 FITGASSGFGRGMTERLLARGDRVAatvrrpdalddlkarygdrLWvlqldvtDSAAVRAvvdrafaALGRIDVVVSNAG 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  87 --TVYPADLLStkDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLT 164
Cdd:PRK06482  86 ygLFGAAEELS--DAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEAVA 163

                 ....*..
gi 210032112 165 SELQALG 171
Cdd:PRK06482 164 QEVAPFG 170
GlcDH_SDR_c cd05358
glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR ...
35-187 9.77e-08

glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187616 [Multi-domain]  Cd Length: 253  Bit Score: 51.62  E-value: 9.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKR---------------------------QSILVLWDINK----------VKKEVGD 77
Cdd:cd05358    2 KGKVALVTGASSGIGKAIAIRLATAganvvvnyrskedaaeevveeikavggKAIAVQADVSKeedvvalfqsAIKEFGT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVcgHEGIPY--LIPYCSSKF 154
Cdd:cd05358   82 LDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFLCAREAIKRFRKSKiKGKIINMSSV--HEKIPWpgHVNYAASKG 159
                        170       180       190
                 ....*....|....*....|....*....|...
gi 210032112 155 AAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:cd05358  160 GVKMMTKTLAQE---YAPKGIRVNAIAPGAINT 189
PRK12937 PRK12937
short chain dehydrogenase; Provisional
76-210 1.31e-07

short chain dehydrogenase; Provisional


Pssm-ID: 171821 [Multi-domain]  Cd Length: 245  Bit Score: 51.28  E-value: 1.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK12937  82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHL--GQGGRIINLSTSVIALPLPGYGPYAASKAA 159
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 210032112 156 AVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTKNPstrlwpvlETDEVVRSL 210
Cdd:PRK12937 160 VEGLVHVLANE---LRGRGITVNAVAPGPVATELFFNG--------KSAEQIDQL 203
PRK08936 PRK08936
glucose-1-dehydrogenase; Provisional
32-187 1.40e-07

glucose-1-dehydrogenase; Provisional


Pssm-ID: 181585 [Multi-domain]  Cd Length: 261  Bit Score: 51.27  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVL------WDINKVKKEV-----------GDVT--------------- 79
Cdd:PRK08936   3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVInyrsdeEEANDVAEEIkkaggeaiavkGDVTvesdvvnliqtavke 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 -----IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVcgHEGIPY--LIPYCS 151
Cdd:PRK08936  83 fgtldVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDiKGNIINMSSV--HEQIPWplFVHYAA 160
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 210032112 152 SKFAAvgfhrGLTSELQAL--GKTGIKTSCLCPVFVNT 187
Cdd:PRK08936 161 SKGGV-----KLMTETLAMeyAPKGIRVNNIGPGAINT 193
fabG PRK07792
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
33-182 1.44e-07

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181120 [Multi-domain]  Cd Length: 306  Bit Score: 51.32  E-value: 1.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDI-----------------NKVKKEVGDVT---------------- 79
Cdd:PRK07792   9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVasaldasdvldeiraagAKAVAVAGDISqratadelvatavglg 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 ---IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-------HGHIVTVAS---VCGHEGIPyl 146
Cdd:PRK07792  89 gldIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAkaaggpvYGRIVNTSSeagLVGPVGQA-- 166
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 210032112 147 iPYCSSKFAAVGFhrgLTSELQALGKTGIKTSCLCP 182
Cdd:PRK07792 167 -NYGAAKAGITAL---TLSAARALGRYGVRANAICP 198
fabG PRK08217
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
36-191 2.33e-07

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181297 [Multi-domain]  Cd Length: 253  Bit Score: 50.34  E-value: 2.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN------------------------------------KVKKEVGDVT 79
Cdd:PRK08217   5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNqekleeavaecgalgtevrgyaanvtdeedveatfaQIAEDFGQLN 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 IVVNNAGTVYPADLLSTKDEEITKTF---------EVNILGHFWITKALLPSMME-RNHGHIVTVASVCGHeGIPYLIPY 149
Cdd:PRK08217  85 GLINNAGILRDGLLVKAKDGKVTSKMsleqfqsviDVNLTGVFLCGREAAAKMIEsGSKGVIINISSIARA-GNMGQTNY 163
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 210032112 150 CSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFTK 191
Cdd:PRK08217 164 SASKAGVAAMTVTWAKE---LARYGIRVAAIAPGVIETEMTA 202
RDH_SDR_c cd08933
retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members ...
35-182 2.40e-07

retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187638 [Multi-domain]  Cd Length: 261  Bit Score: 50.61  E-value: 2.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWD-------------------------------------INKVKKEVGD 77
Cdd:cd08933    8 ADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCArgeaagqaleselnragpgsckfvpcdvtkeediktlISVTVERFGR 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNAGTVYPADLLS-TKDEEITKTFEVNILGHFWITKALLPSMMERnHGHIVTVASVCGHEGIPYLIPYCSSKFAA 156
Cdd:cd08933   88 IDCLVNNAGWHPPHQTTDeTSAQEFRDLLNLNLISYFLASKYALPHLRKS-QGNIINLSSLVGSIGQKQAAPYVATKGAI 166
                        170       180
                 ....*....|....*....|....*.
gi 210032112 157 VGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd08933  167 TAMTKALAVD---ESRYGVRVNCISP 189
PRK06123 PRK06123
SDR family oxidoreductase;
30-187 3.18e-07

SDR family oxidoreductase;


Pssm-ID: 180411 [Multi-domain]  Cd Length: 248  Bit Score: 50.16  E-value: 3.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  30 RRKSVAGEIV-LITGAGhGIGRQTTYEFAKRQSILVLWDinKVKKEVGDVTIVVNNAGTVYPADLLSTKD-EEITKTFEV 107
Cdd:PRK06123  35 RNRDAAEAVVqAIRRQG-GEALAVAADVADEADVLRLFE--AVDRELGRLDALVNNAGILEAQMRLEQMDaARLTRIFAT 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 108 NILGHFWITKALLPSMMERNHGH---IVTVASVCGHEGIP--YlIPYCSSKFAAVGFHRGLTSELQAlgkTGIKTSCLCP 182
Cdd:PRK06123 112 NVVGSFLCAREAVKRMSTRHGGRggaIVNVSSMAARLGSPgeY-IDYAASKGAIDTMTIGLAKEVAA---EGIRVNAVRP 187

                 ....*
gi 210032112 183 VFVNT 187
Cdd:PRK06123 188 GVIYT 192
SPR-like_SDR_c cd05367
sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, ...
39-187 3.23e-07

sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187625 [Multi-domain]  Cd Length: 241  Bit Score: 49.98  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKR--QSILV----------------------------LWDINKV-------KKEVGDVTIV 81
Cdd:cd05367    2 IILTGASRGIGRALAEELLKRgsPSVVVllarseeplqelkeelrpglrvttvkadLSDAAGVeqlleaiRKLDGERDLL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  82 VNNAGTVYPADLLSTKD-EEITKTFEVNILGHFWITKALLPSMMERN-HGHIVTVASVCGHEGIPYLIPYCSSKFAAVGF 159
Cdd:cd05367   82 INNAGSLGPVSKIEFIDlDELQKYFDLNLTSPVCLTSTLLRAFKKRGlKKTVVNVSSGAAVNPFKGWGLYCSSKAARDMF 161
                        170       180
                 ....*....|....*....|....*...
gi 210032112 160 HRGLTSELQalgktGIKTSCLCPVFVNT 187
Cdd:cd05367  162 FRVLAAEEP-----DVRVLSYAPGVVDT 184
PRK07831 PRK07831
SDR family oxidoreductase;
35-139 4.92e-07

SDR family oxidoreductase;


Pssm-ID: 236110 [Multi-domain]  Cd Length: 262  Bit Score: 49.65  E-value: 4.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGA-GHGIGRQTTYEFAKRQSILVLWDIN---------KVKKEVG---------DVT---------------- 79
Cdd:PRK07831  16 AGKVVLVTAAaGTGIGSATARRALEEGARVVISDIHerrlgetadELAAELGlgrveavvcDVTseaqvdalidaaverl 95
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 210032112  80 ----IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCG 139
Cdd:PRK07831  96 grldVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHgGVIVNNASVLG 160
PRK06523 PRK06523
short chain dehydrogenase; Provisional
35-187 6.97e-07

short chain dehydrogenase; Provisional


Pssm-ID: 180604 [Multi-domain]  Cd Length: 260  Bit Score: 49.13  E-value: 6.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAK-----------------RQSILVLWD----------INKVKKEVGDVTIVVNNAG- 86
Cdd:PRK06523   8 AGKRALVTGGTKGIGAATVARLLEagarvvttarsrpddlpEGVEFVAADlttaegcaavARAVLERLGGVDILVHVLGg 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  87 TVYPAD-LLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIP-YLIPYCSSKFAAVGFHRGLT 164
Cdd:PRK06523  88 SSAPAGgFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPeSTTAYAAAKAALSTYSKSLS 167
                        170       180
                 ....*....|....*....|...
gi 210032112 165 SElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK06523 168 KE---VAPKGVRVNTVSPGWIET 187
PR_SDR_c cd05357
pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR ...
68-167 9.80e-07

pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187615 [Multi-domain]  Cd Length: 234  Bit Score: 48.43  E-value: 9.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:cd05357   69 VAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLIQAFARRLAGSRNGSIINIIDAMTDRPLTGYF 148
                         90       100
                 ....*....|....*....|
gi 210032112 148 PYCSSKFAAVGFHRGLTSEL 167
Cdd:cd05357  149 AYCMSKAALEGLTRSAALEL 168
PRK12743 PRK12743
SDR family oxidoreductase;
68-173 1.10e-06

SDR family oxidoreductase;


Pssm-ID: 237187 [Multi-domain]  Cd Length: 256  Bit Score: 48.49  E-value: 1.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYL 146
Cdd:PRK12743  71 LDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQgGRIINITSVHEHTPLPGA 150
                         90       100
                 ....*....|....*....|....*..
gi 210032112 147 IPYCSSKFAAVGFHRGLTSELQALGKT 173
Cdd:PRK12743 151 SAYTAAKHALGGLTKAMALELVEHGIL 177
haloalcohol_DH_SDR_c-like cd05361
haloalcohol dehalogenase, classical (c) SDRs; Dehalogenases cleave carbon-halogen bonds. ...
68-187 1.35e-06

haloalcohol dehalogenase, classical (c) SDRs; Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187619 [Multi-domain]  Cd Length: 242  Bit Score: 48.34  E-value: 1.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNN---AGTVYPADllSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIP 144
Cdd:cd05361   63 VDAVLQAGGAIDVLVSNdyiPRPMNPID--GTSEADIRQAFEALSIFPFALLQAAIAQMKKAGGGSIIFITSAVPKKPLA 140
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 210032112 145 YLIPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:cd05361  141 YNSLYGPARAAAVALAESLAKE---LSRDNILVYAIGPNFFNS 180
PRK06124 PRK06124
SDR family oxidoreductase;
33-182 2.29e-06

SDR family oxidoreductase;


Pssm-ID: 235702 [Multi-domain]  Cd Length: 256  Bit Score: 47.40  E-value: 2.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  33 SVAGEIVLITGAGHGIGRQTTYEFAK---------------------------RQSILVLwDIN----------KVKKEV 75
Cdd:PRK06124   8 SLAGQVALVTGSARGLGFEIARALAGagahvlvngrnaatleaavaalraaggAAEALAF-DIAdeeavaaafaRIDAEH 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK06124  87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQG 166
                        170       180
                 ....*....|....*....|....*..
gi 210032112 156 AVGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:PRK06124 167 LTGLMRALAAE---FGPHGITSNAIAP 190
fabG PRK08642
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
37-173 2.66e-06

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181517 [Multi-domain]  Cd Length: 253  Bit Score: 47.39  E-value: 2.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  37 EIVLITGAGHGIGRQTTYEFAkRQSILVLWDIN-------KVKKEVGD-----------------------------VTI 80
Cdd:PRK08642   6 QTVLVTGGSRGLGAAIARAFA-REGARVVVNYHqsedaaeALADELGDraialqadvtdreqvqamfatatehfgkpITT 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  81 VVNNA--GTVYPADLLSTKD----EEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVAS-------VCGHEgipyli 147
Cdd:PRK08642  85 VVNNAlaDFSFDGDARKKADditwEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTnlfqnpvVPYHD------ 158
                        170       180
                 ....*....|....*....|....*.
gi 210032112 148 pYCSSKFAAVGFHRGLTSELQALGKT 173
Cdd:PRK08642 159 -YTTAKAALLGLTRNLAAELGPYGIT 183
PRK12481 PRK12481
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
68-190 3.60e-06

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 171531 [Multi-domain]  Cd Length: 251  Bit Score: 46.82  E-value: 3.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMER-NHGHIVTVASVCGHEGIPYL 146
Cdd:PRK12481  74 VSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQgNGGKIINIASMLSFQGGIRV 153
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 210032112 147 IPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFT 190
Cdd:PRK12481 154 PSYTASKSAVMGLTRALATE---LSQYNINVNAIAPGYMATDNT 194
PRK06500 PRK06500
SDR family oxidoreductase;
35-182 5.93e-06

SDR family oxidoreductase;


Pssm-ID: 235816 [Multi-domain]  Cd Length: 249  Bit Score: 46.10  E-value: 5.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKEVGDVTIVVN-------------------------- 83
Cdd:PRK06500   5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDpasleAARAELGESALVIRadagdvaaqkalaqalaeafgrldav 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  84 --NAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHR 161
Cdd:PRK06500  85 fiNAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLL--ANPASIVLNGSINAHIGMPNSSVYAASKAALLSLAK 162
                        170       180
                 ....*....|....*....|.
gi 210032112 162 GLTSELqaLGKtGIKTSCLCP 182
Cdd:PRK06500 163 TLSGEL--LPR-GIRVNAVSP 180
SDR_c8 cd08930
classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad ...
36-182 6.23e-06

classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187635 [Multi-domain]  Cd Length: 250  Bit Score: 46.17  E-value: 6.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK-----VKKEVG------------DVT------------------- 79
Cdd:cd08930    2 DKIILITGAAGLIGKAFCKALLSAGARLILADINApaleqLKEELTnlyknrvialelDITskesikeliesylekfgri 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  80 -IVVNNAG---TVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCG---------HEGIPYL 146
Cdd:cd08930   82 dILINNAYpspKVWGSRFEEFPYEQWNEVLNVNLGGAFLCSQAFIKLFKKQGKGSIINIASIYGviapdfriyENTQMYS 161
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 210032112 147 -IPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCP 182
Cdd:cd08930  162 pVEYSVIKAGIIHLTKYLAKY---YADTGIRVNAISP 195
PRK08993 PRK08993
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
68-190 6.72e-06

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 181605 [Multi-domain]  Cd Length: 253  Bit Score: 46.02  E-value: 6.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNH-GHIVTVASVCGHEGIPYL 146
Cdd:PRK08993  76 LERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNgGKIINIASMLSFQGGIRV 155
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 210032112 147 IPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGFT 190
Cdd:PRK08993 156 PSYTASKSGVMGVTRLMANE---WAKHNINVNAIAPGYMATNNT 196
PRK07890 PRK07890
short chain dehydrogenase; Provisional
35-176 1.03e-05

short chain dehydrogenase; Provisional


Pssm-ID: 181159 [Multi-domain]  Cd Length: 258  Bit Score: 45.72  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAKRQSILVLW-----DINKVKKEV-------------------------------GDV 78
Cdd:PRK07890   4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAartaeRLDEVAAEIddlgrralavptditdedqcanlvalalerfGRV 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  79 TIVVNNAGTVYPADLLSTKD-EEITKTFEVNILGHFWITKALLPSMMERnHGHIVTVAS-VCGHEGIPYlIPYCSSKFAA 156
Cdd:PRK07890  84 DALVNNAFRVPSMKPLADADfAHWRAVIELNVLGTLRLTQAFTPALAES-GGSIVMINSmVLRHSQPKY-GAYKMAKGAL 161
                        170       180
                 ....*....|....*....|
gi 210032112 157 VGFHRGLTSElqaLGKTGIK 176
Cdd:PRK07890 162 LAASQSLATE---LGPQGIR 178
Lin1944_like_SDR_c cd11731
Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a ...
39-187 2.34e-05

Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212497 [Multi-domain]  Cd Length: 198  Bit Score: 44.11  E-value: 2.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  39 VLITGAGHGIGRQTTYEFAKRQSILV------------LWDINKVK---KEVGDVTIVVNNAGTVYPADLLSTKDEEITK 103
Cdd:cd11731    1 IIVIGATGTIGLAVAQLLSAHGHEVItagrssgdyqvdITDEASIKalfEKVGHFDAIVSTAGDAEFAPLAELTDADFQR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112 104 TFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPylipyCSSKFAAV-----GFHRGLTSELQAlgktGIKTS 178
Cdd:cd11731   81 GLNSKLLGQINLVRHGLPYL--NDGGSITLTSGILAQRPIP-----GGAAAATVngaleGFVRAAAIELPR----GIRIN 149

                 ....*....
gi 210032112 179 CLCPVFVNT 187
Cdd:cd11731  150 AVSPGVVEE 158
PRK06197 PRK06197
short chain dehydrogenase; Provisional
36-140 3.09e-05

short chain dehydrogenase; Provisional


Pssm-ID: 235737 [Multi-domain]  Cd Length: 306  Bit Score: 44.25  E-value: 3.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLW--DINKVKKEV---------GDVTI------------------------ 80
Cdd:PRK06197  16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAvrNLDKGKAAAaritaatpgADVTLqeldltslasvraaadalraaypr 95
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 210032112  81 ---VVNNAGTVYPADLLSTKDEEITktFEVNILGHFWITKALLPSMMERNHGHIVTVASVcGH 140
Cdd:PRK06197  96 idlLINNAGVMYTPKQTTADGFELQ--FGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSG-GH 155
fabG PRK08261
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
32-139 8.41e-05

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236207 [Multi-domain]  Cd Length: 450  Bit Score: 43.29  E-value: 8.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDI-------NKVKKEVG------DVT------------------- 79
Cdd:PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVpaagealAAVANRVGgtalalDITapdapariaehlaerhggl 285
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 210032112  80 -IVVNNAGTvypadllsTKDEEITKTFE--------VNILGHFWITKALLPSMMERNHGHIVTVASVCG 139
Cdd:PRK08261 286 dIVVHNAGI--------TRDKTLANMDEarwdsvlaVNLLAPLRITEALLAAGALGDGGRIVGVSSISG 346
PRK08278 PRK08278
SDR family oxidoreductase;
76-183 9.16e-05

SDR family oxidoreductase;


Pssm-ID: 181349 [Multi-domain]  Cd Length: 273  Bit Score: 42.97  E-value: 9.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 GDVTIVVNNAGTVYPADLLSTKdeeiTKTF----EVNILGHFWITKALLPSMMERNHGHIVTVA---SVCGHEGIPYLiP 148
Cdd:PRK08278  89 GGIDICVNNASAINLTGTEDTP----MKRFdlmqQINVRGTFLVSQACLPHLKKSENPHILTLSpplNLDPKWFAPHT-A 163
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 210032112 149 YCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPV 183
Cdd:PRK08278 164 YTMAKYGMSLCTLGLAEE---FRDDGIAVNALWPR 195
PRK08703 PRK08703
SDR family oxidoreductase;
32-135 1.35e-04

SDR family oxidoreductase;


Pssm-ID: 169556 [Multi-domain]  Cd Length: 239  Bit Score: 42.23  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKVKKEVGDVTIVVnnAGTVYPA----DLLSTKDEE------- 100
Cdd:PRK08703   2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE--AGHPEPFairfDLMSAEEKEfeqfaat 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 210032112 101 ITKTFE------VNILGHFWITKALLPSMMER--NHGHIVTVA 135
Cdd:PRK08703  80 IAEATQgkldgiVHCAGYFYALSPLDFQTVAEwvNQYRINTVA 122
PRK08063 PRK08063
enoyl-[acyl-carrier-protein] reductase FabL;
35-167 1.43e-04

enoyl-[acyl-carrier-protein] reductase FabL;


Pssm-ID: 236145 [Multi-domain]  Cd Length: 250  Bit Score: 42.01  E-value: 1.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  35 AGEIVLITGAGHGIGRQTTYEFAK---------------------------RQSILVLWDINKVKK----------EVGD 77
Cdd:PRK08063   3 SGKVALVTGSSRGIGKAIALRLAEegydiavnyarsrkaaeetaeeiealgRKALAVKANVGDVEKikemfaqideEFGR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  78 VTIVVNNA--GTVYPADLLSTKDEEITktFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFA 155
Cdd:PRK08063  83 LDVFVNNAasGVLRPAMELEESHWDWT--MNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKAA 160
                        170
                 ....*....|..
gi 210032112 156 AVGFHRGLTSEL 167
Cdd:PRK08063 161 LEALTRYLAVEL 172
PRK12748 PRK12748
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
68-189 2.37e-04

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237189 [Multi-domain]  Cd Length: 256  Bit Score: 41.60  E-value: 2.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASvcG-HEG-IPY 145
Cdd:PRK12748  86 FYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTS--GqSLGpMPD 163
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 210032112 146 LIPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNTGF 189
Cdd:PRK12748 164 ELAYAATKGAIEAFTKSLAPE---LAEKGITVNAVNPGPTDTGW 204
PRK09135 PRK09135
pteridine reductase; Provisional
68-167 2.67e-04

pteridine reductase; Provisional


Pssm-ID: 181668 [Multi-domain]  Cd Length: 249  Bit Score: 41.45  E-value: 2.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPsMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK09135  76 VAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP-QLRKQRGAIVNITDIHAERPLKGYP 154
                         90       100
                 ....*....|....*....|
gi 210032112 148 PYCSSKFAAVGFHRGLTSEL 167
Cdd:PRK09135 155 VYCAAKAALEMLTRSLALEL 174
PRK12746 PRK12746
SDR family oxidoreductase;
32-187 4.30e-04

SDR family oxidoreductase;


Pssm-ID: 183718 [Multi-domain]  Cd Length: 254  Bit Score: 40.79  E-value: 4.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILV------------------------------LWDINKVKKEV------ 75
Cdd:PRK12746   2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAihygrnkqaadetireiesnggkaflieadLNSIDGVKKLVeqlkne 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  76 -------GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYLIP 148
Cdd:PRK12746  82 lqirvgtSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLL--RAEGRVINISSAEVRLGFTGSIA 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 210032112 149 YCSSKfaavGFHRGLTSEL-QALGKTGIKTSCLCPVFVNT 187
Cdd:PRK12746 160 YGLSK----GALNTMTLPLaKHLGERGITVNTIMPGYTKT 195
PRK12859 PRK12859
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
68-173 5.91e-04

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 183797 [Multi-domain]  Cd Length: 256  Bit Score: 40.15  E-value: 5.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  68 INKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLI 147
Cdd:PRK12859  87 LNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPMVGEL 166
                         90       100
                 ....*....|....*....|....*.
gi 210032112 148 PYCSSKFAAVGFHRGLTSELQALGKT 173
Cdd:PRK12859 167 AYAATKGAIDALTSSLAAEVAHLGIT 192
PRK12747 PRK12747
short chain dehydrogenase; Provisional
69-187 1.17e-03

short chain dehydrogenase; Provisional


Pssm-ID: 183719 [Multi-domain]  Cd Length: 252  Bit Score: 39.29  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  69 NKVKKEVGDVT--IVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMmeRNHGHIVTVASVCGHEGIPYL 146
Cdd:PRK12747  78 NELQNRTGSTKfdILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRL--RDNSRIINISSAATRISLPDF 155
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 210032112 147 IPYCSSKFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK12747 156 IAYSMTKGAINTMTFTLAKQ---LGARGITVNAILPGFIKT 193
RhaD COG3347
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
32-171 1.19e-03

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 39.90  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDIN-----KVKKE-------------------------------- 74
Cdd:COG3347  421 KPLAGRVALVTGGAGGIGRATAARLAAEGAAVVVADLDgeaaeAAAAElgggygadavdatdvdvtaeaavaaafgfagl 500
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  75 -VGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMME-RNHGHIVTVASVCGHEGIPYLIPYCSS 152
Cdd:COG3347  501 dIGGSDIGVANAGIASSSPEEETRLSFWLNNFAHLSTGQFLVARAAFQGTGGqGLGGSSVFAVSKNAAAAAYGAAAAATA 580
                        170
                 ....*....|....*....
gi 210032112 153 KFAAVGFHRGLTSELQALG 171
Cdd:COG3347  581 KAAAQHLLRALAAEGGANG 599
SDH_SDR_c_like cd05322
Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate ...
55-167 1.24e-03

Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187583 [Multi-domain]  Cd Length: 257  Bit Score: 39.37  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  55 EFAKRQSILVLwdINKVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERN-HGHIVT 133
Cdd:cd05322   60 DATNEQSVIAL--SKGVDEIFKRVDLLVYSAGIAKSAKITDFELGDFDRSLQVNLVGYFLCAREFSKLMIRDGiQGRIIQ 137
                         90       100       110
                 ....*....|....*....|....*....|....
gi 210032112 134 VASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSEL 167
Cdd:cd05322  138 INSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDL 171
PRK08339 PRK08339
short chain dehydrogenase; Provisional
73-187 1.80e-03

short chain dehydrogenase; Provisional


Pssm-ID: 169389 [Multi-domain]  Cd Length: 263  Bit Score: 39.07  E-value: 1.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 210032112  73 KEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSS 152
Cdd:PRK08339  81 KNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVV 160
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 210032112 153 KFAAVGFHRGLTSElqaLGKTGIKTSCLCPVFVNT 187
Cdd:PRK08339 161 RISMAGLVRTLAKE---LGPKGITVNGIMPGIIRT 192
PRK06720 PRK06720
hypothetical protein; Provisional
31-80 9.86e-03

hypothetical protein; Provisional


Pssm-ID: 180669 [Multi-domain]  Cd Length: 169  Bit Score: 36.10  E-value: 9.86e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 210032112  31 RKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINkvkKEVGDVTI 80
Cdd:PRK06720  11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDID---QESGQATV 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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