NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|215820626|ref|NP_001135971|]
View 

FLYWCH family member 2 [Homo sapiens]

Protein Classification

FLYWCH_N domain-containing protein( domain architecture ID 10634185)

FLYWCH_N domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FLYWCH_N pfam15423
FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some ...
 1-106 6.04e-47

FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some FLYWCH-zinc-finger proteins, found in eukaryotes. The family is found in association with pfam04500. There are two conserved sequence motifs: EQE and QEPS.


:

Pssm-ID: 405997  Cd Length: 107  Bit Score: 147.30  E-value: 6.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215820626    1 MPLPEPSEQEGESVKASQEPSPKPGTEVIPAAPRKPRKFSKLVLLTASKDSTKVAGAKRKGVHCVMSLGVPGPATLAKAL 80
Cdd:pfam15423   1 MPLPEPSEQEGESVKAGQEPSPEPGTDVVPAAPRKPREFSKLVLLTASDQSGDGVDSKPKEVHCVMSLEMSGPATLASTL 80

                          90       100
                  ....*....|....*....|....*..
gi 215820626   81 -LQTHPEAQRAIEAAPQEPEQKRSRQD 106
Cdd:pfam15423  81 qILPAEEQGGAVQPAPQAPEQKRSKLD 107
 
Name Accession Description Interval E-value
FLYWCH_N pfam15423
FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some ...
 1-106 6.04e-47

FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some FLYWCH-zinc-finger proteins, found in eukaryotes. The family is found in association with pfam04500. There are two conserved sequence motifs: EQE and QEPS.


Pssm-ID: 405997  Cd Length: 107  Bit Score: 147.30  E-value: 6.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215820626    1 MPLPEPSEQEGESVKASQEPSPKPGTEVIPAAPRKPRKFSKLVLLTASKDSTKVAGAKRKGVHCVMSLGVPGPATLAKAL 80
Cdd:pfam15423   1 MPLPEPSEQEGESVKAGQEPSPEPGTDVVPAAPRKPREFSKLVLLTASDQSGDGVDSKPKEVHCVMSLEMSGPATLASTL 80

                          90       100
                  ....*....|....*....|....*..
gi 215820626   81 -LQTHPEAQRAIEAAPQEPEQKRSRQD 106
Cdd:pfam15423  81 qILPAEEQGGAVQPAPQAPEQKRSKLD 107
 
Name Accession Description Interval E-value
FLYWCH_N pfam15423
FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some ...
 1-106 6.04e-47

FLYWCH-type zinc finger-containing protein; This family is the N-terminus of some FLYWCH-zinc-finger proteins, found in eukaryotes. The family is found in association with pfam04500. There are two conserved sequence motifs: EQE and QEPS.


Pssm-ID: 405997  Cd Length: 107  Bit Score: 147.30  E-value: 6.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215820626    1 MPLPEPSEQEGESVKASQEPSPKPGTEVIPAAPRKPRKFSKLVLLTASKDSTKVAGAKRKGVHCVMSLGVPGPATLAKAL 80
Cdd:pfam15423   1 MPLPEPSEQEGESVKAGQEPSPEPGTDVVPAAPRKPREFSKLVLLTASDQSGDGVDSKPKEVHCVMSLEMSGPATLASTL 80

                          90       100
                  ....*....|....*....|....*..
gi 215820626   81 -LQTHPEAQRAIEAAPQEPEQKRSRQD 106
Cdd:pfam15423  81 qILPAEEQGGAVQPAPQAPEQKRSKLD 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH