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Conserved domains on  [gi|224028289|ref|NP_001138890|]
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tetratricopeptide repeat protein 28 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 2.95e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.95e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 224028289  1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 1.56e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


:

Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.53  E-value: 1.56e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHD 1186
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1187 EALAVAERGRTRAFADLLVERQTGQQDSDpyspvTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995   251 AAAAAALLALAAALLLLAALAALAAAAAA-----AALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 224028289  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.01e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.01e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289    47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 224028289   899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2088-2336 1.17e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2088 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2165
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2166 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2245
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2246 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2325
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 224028289  2326 YSSAGSARSSP 2336
Cdd:pfam05109  611 GTSSTPVVTSP 621
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 2.95e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.95e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 224028289  1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 1.56e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.53  E-value: 1.56e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHD 1186
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1187 EALAVAERGRTRAFADLLVERQTGQQDSDpyspvTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995   251 AAAAAALLALAAALLLLAALAALAAAAAA-----AALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 224028289  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.01e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.01e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289    47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 224028289   899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
791-1000 2.08e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  791 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 870
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  871 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 950
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 224028289  951 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 1000
Cdd:COG0457   140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 63-157 7.07e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 7.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   63 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 142
Cdd:PLN03088    7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                          90
                  ....*....|....*
gi 224028289  143 ADALAAFASGLAQDP 157
Cdd:PLN03088   87 QTAKAALEKGASLAP 101
TPR_12 pfam13424
Tetratricopeptide repeat;
834-909 2.29e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.63  E-value: 2.29e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289   834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 845-1148 6.91e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 6.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   845 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 924
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   925 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 1001
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1002 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1066
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1067 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 224028289  1147 FE 1148
Cdd:pfam17874  310 AE 311
TPR_12 pfam13424
Tetratricopeptide repeat;
515-586 1.04e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 57.01  E-value: 1.04e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289   515 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 586
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2088-2336 1.17e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2088 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2165
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2166 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2245
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2246 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2325
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 224028289  2326 YSSAGSARSSP 2336
Cdd:pfam05109  611 GTSSTPVVTSP 621
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
886-989 2.74e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 2.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  886 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 965
Cdd:COG3063     1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 224028289  966 LHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 962-1198 9.71e-07

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.54  E-value: 9.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  962 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1030
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1031 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1104
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1105 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1181
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 224028289 1182 LGHHDEALAVAERGRTR 1198
Cdd:NF040586  660 LGDADEARELAREVLDR 676
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 516-626 1.22e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 595
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 224028289  596 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 626
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 878-902 2.23e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.23e-05
                            10        20
                    ....*....|....*....|....*
gi 224028289    878 RAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
PHA03378 PHA03378
EBNA-3B; Provisional
 2110-2416 3.17e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 49.68  E-value: 3.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2110 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2183
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2184 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2255
Cdd:PHA03378  597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2256 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2324
Cdd:PHA03378  671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2325 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2404
Cdd:PHA03378  746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                         330
                  ....*....|..
gi 224028289 2405 EEGVDKLELKEL 2416
Cdd:PHA03378  817 QQGPTKQILRQL 828
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 475-683 1.68e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 549
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  550 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 624
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  625 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 683
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 635-666 5.70e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.70e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 224028289    635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 878-1206 1.10e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.52  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  878 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 943
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  944 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 1014
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1015 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1077
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1078 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1148
Cdd:NF040586  656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1149 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1206
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1008-1140 1.15e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1008 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1087
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1088 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1140
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 957-990 1.18e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.18e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 224028289    957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 73-149 2.20e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 2.20e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289   73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:NF040959  120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 2.95e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.95e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 224028289  1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 1.56e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.53  E-value: 1.56e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHD 1186
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1187 EALAVAERGRTRAFADLLVERQTGQQDSDpyspvTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995   251 AAAAAALLALAAALLLLAALAALAAAAAA-----AALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 224028289  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
875-1137 3.82e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.71  E-value: 3.82e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  875 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELgeAF 954
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETnnpt 1034
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1035 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1114
Cdd:COG0457   144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                         250       260
                  ....*....|....*....|...
gi 224028289 1115 DEAKIRHGLGLSLWASGNLEEAQ 1137
Cdd:COG0457   222 LLLLALALLLALRLAALALYQYR 244
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.01e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.01e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289    47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 224028289   899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
791-1000 2.08e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  791 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 870
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  871 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 950
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 224028289  951 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 1000
Cdd:COG0457   140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
753-1000 4.26e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 4.26e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  753 EASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 912
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  913 mqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLvvAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 992
Cdd:COG0457   142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 224028289  993 RALESDAA 1000
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 516-821 1.31e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.11  E-value: 1.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  516 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG2956     8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 673
Cdd:COG2956    76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  674 AKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlE 753
Cdd:COG2956   144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 224028289  754 ASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQL 821
Cdd:COG2956   212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
593-835 1.49e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 96.23  E-value: 1.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  593 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 672
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  673 qAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSL 832
Cdd:COG0457   144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220


                  ...
gi 224028289  833 EAQ 835
Cdd:COG0457   221 ELL 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
350-597 5.27e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.69  E-value: 5.27e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  350 ELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIakdlgnKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  430 kaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 509
Cdd:COG0457    78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  510 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG0457   146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 224028289  590 IQSEARAL 597
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 754-1105 1.40e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 1.40e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYtmafkcyeeqldlgqklkdpsle 833
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEY----------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  834 aqvygnmgitkmnmnvmEEAIGYFEQQLAMLQQlsgnesvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 913
Cdd:COG2956    59 -----------------DRAIRIHQKLLERDPD---------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  914 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 993
Cdd:COG2956   108 -DDAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGP--ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  994 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETNNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 1073
Cdd:COG2956   178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248

                         330       340       350
                  ....*....|....*....|....*....|..
gi 224028289 1074 AAktvsyssLGRTHHALQNYSQAVMYLQEGLR 1105
Cdd:COG2956   249 LA-------LADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 720-1019 1.73e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 1.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  720 LGDIFICKKDINGAIKFYEQqlglAHQVKDRRLEAsaYAALGTAYRMIQKYDKALGYHTQELEVYQELSdlpgecRAHGH 799
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEE----ALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  800 LAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLE-AQVYgnmgitkmnmnvmeEAIGYFEQQLAMLQQLSgnESVLDRGR 878
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlAEIY--------------EQEGDWEKAIEVLERLL--KLGPENAH 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQ 958
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLP 213

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224028289  959 AYGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 640-937 1.88e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 1.88e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkYLLSLaqsLNNSQAKFRALGN 719
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHG 798
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  799 HLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDRgr 878
Cdd:COG2956   149 ELAELYLEQGDYDEAIEALEKALKL-----DPDC-ARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPR-- 217

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289  879 aygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:COG2956   218 ----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 883-1182 2.66e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.26  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  883 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGE 962
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQK----LLERDP--DRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  963 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGN 1042
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1043 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1122
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1123 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1182
Cdd:COG2956   218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
316-575 5.27e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 5.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQskdelsEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeAR 395
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 475
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  476 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 555
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225

                         250       260
                  ....*....|....*....|
gi 224028289  556 THGNLAVAYQALGAHDRALQ 575
Cdd:COG0457   226 ALALLLALRLAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 560-862 1.79e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  560 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 639
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  640 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAKFRalgn 719
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  799 HLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYgnmgitkMNMNVMEEAIGYFEQQLA 862
Cdd:COG2956   217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 416-679 2.08e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.45  E-value: 2.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  416 YHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 492
Cdd:COG3914    17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  493 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 571
Cdd:COG3914    97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  572 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 651
Cdd:COG3914   164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231

                         250       260
                  ....*....|....*....|....*...
gi 224028289  652 EAVKYYEQDLALAKDLHDKLSQAKAYCN 679
Cdd:COG3914   232 VYDRFEELLAALARGPSELSPFALLYLP 259
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 359-622 2.83e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.48  E-value: 2.83e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYA 438
Cdd:COG2956    47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALR 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  439 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 518
Cdd:COG2956   115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  519 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 598
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249

                         250       260
                  ....*....|....*....|....
gi 224028289  599 NLGNFHCSRGEYVQAAPYYEQYLR 622
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
673-923 1.70e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.29  E-value: 1.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  673 QAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIED------YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDD 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG0457   144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222

                         250
                  ....*....|.
gi 224028289  913 MQDQAKAYRGL 923
Cdd:COG0457   223 LLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 284-1150 1.18e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 87.06  E-value: 1.18e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   284 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALAshkqcvllakqskdELSEARELG-NMGA 362
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEK--------------ELRKALSLGyPKNQ 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   363 V-------YIAMGDFENAVQcheqhLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKaiemR 435
Cdd:TIGR02917   92 VlpllaraYLLQGKFQQVLD-----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----S 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   436 AYAGLGHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGR 515
Cdd:TIGR02917  159 LYAKLGLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVL 230

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   516 AygNMGNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEAR 595
Cdd:TIGR02917  231 L--ALATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPAL 298

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   596 ALSNLGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAK 675
Cdd:TIGR02917  299 LLAGASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   676 AYcnLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLgdiFICKKDINGAIKFYEQQLGLAHQVKDRRLeas 755
Cdd:TIGR02917  364 AA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS---KLSQGDPSEAIADLETAAQLDPELGRADL--- 435

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   756 ayaALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQ---------- 825
Cdd:TIGR02917  436 ---LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanla 506

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   826 ----KLKDPSLEAQVYGNM-GITKMNMNVMeeaigyfeQQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEE 895
Cdd:TIGR02917  507 ridiQEGNPDDAIQRFEKVlTIDPKNLRAI--------LALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYL 578

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   896 AIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYE 974
Cdd:TIGR02917  579 GKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP------DSALALLLLADAYAVMKNYA 652

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   975 QAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtnnptcqgrAYGN--LGLTYESLG 1051
Cdd:TIGR02917  653 KAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQK 717

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1052 TFERAVVYQEQHLSIAAQmNDLAAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasG 1131
Cdd:TIGR02917  718 DYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------A 777

                          890
                   ....*....|....*....
gi 224028289  1132 NLEEAQHQLYRASALFETI 1150
Cdd:TIGR02917  778 ELYLAQKDYDKAIKHYQTV 796
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 276-542 3.65e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.31  E-value: 3.65e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  276 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvLLAKQSKDElsEAR 355
Cdd:COG2956    44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEK--LLELDPDDA--EAL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  356 ELgnMGAVYIAMGDFENAVQCHEQHLKIAKdlgnkrEEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMekaiemR 435
Cdd:COG2956   114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA------R 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                         250       260
                  ....*....|....*....|....*..
gi 224028289  516 aygnmgnAYNALGMYDQAVKYHRQELQ 542
Cdd:COG2956   254 -------LLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-166 6.65e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.97  E-value: 6.65e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                          90
                  ....*....|....*
gi 224028289  152 GLAQDPKSLQLLVGM 166
Cdd:COG0457   102 ALELDPDDAEALYNL 116
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 304-987 7.80e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.90  E-value: 7.80e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   304 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAvqchE 378
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATILIEAGEFEEA----E 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   379 QHLKIAKDLGNKREEARAYSNLgsaYHYRR-NFDKAMSYHNYVLELAQELMEkaieMRAYAGLGHAARcmQDLERAKQYH 457
Cdd:TIGR02917  248 KHADALLKKAPNSPLAHYLKAL---VDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQAYQYL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   458 EQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKY- 536
Cdd:TIGR02917  319 NQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAEYl 386

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   537 ------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQSEARA 596
Cdd:TIGR02917  387 akateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQPDNAS 466

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   597 LSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDLHDKLS 672
Cdd:TIGR02917  467 LHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRAILALA 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   673 QAKAYCN--------LGLAFKA-------LLNFSKAEECQKYL---LSLAQS-LNNSQAKFRALGNLGDIFICKKDINGA 733
Cdd:TIGR02917  541 GLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAGDLNKA 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   734 IKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMA 813
Cdd:TIGR02917  621 VSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESA 688

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   814 FKCYEEQLDlgQKLKDP---SLEAQVYgnmgitkMNMNVMEEAIGYFEQ------------QLAMLQQLSGN-------- 870
Cdd:TIGR02917  689 KKIAKSLQK--QHPKAAlgfELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavktl 759

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   871 ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrAMGSLQQ----ALVCFEK 942
Cdd:TIGR02917  760 EAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYAER 828

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 224028289   943 rlvvAHELgeAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:TIGR02917  829 ----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
240-494 1.03e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.20  E-value: 1.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  240 LSSAYWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 319
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  320 LGHVYTAIGDYPNALASHKQcvllAKQSKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSN 399
Cdd:COG0457    82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  400 LGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 479
Cdd:COG0457   150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                         250
                  ....*....|....*
gi 224028289  480 LGIIHQMKGDYDTAL 494
Cdd:COG0457   230 LLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
998-1268 1.18e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.20  E-value: 1.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  998 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAkt 1077
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEA-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1078 vsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1157
Cdd:COG0457    79 --LNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1158 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVL 1237
Cdd:COG0457   137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                         250       260       270
                  ....*....|....*....|....*....|.
gi 224028289 1238 YYSLAAGYLYSWLLAPGAGIVKFHEHYLGEN 1268
Cdd:COG0457   213 ILTLAALAELLLLALALLLALRLAALALYQY 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-188 7.12e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.89  E-value: 7.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457    56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 224028289  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQK 188
Cdd:COG0457   136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 737-904 2.05e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 815
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  816 CYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 895
Cdd:COG3914   134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198


                  ....*....
gi 224028289  896 AIKYYEQYL 904
Cdd:COG3914   199 AIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 522-744 2.16e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  522 NAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDiqsEARALSNLG 601
Cdd:COG3914     9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL---LAALLELAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  602 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLG 681
Cdd:COG3914    86 LLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLG 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  682 LAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG3914   154 EALRRLGRLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 737-1040 5.58e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.64  E-value: 5.58e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKC 816
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  817 YEEQLDLgqklkDPsleaqvygnmgitkmnmnvmeeaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEA 896
Cdd:COG3914   101 YRRALAL-----NP--------------------------------------------DNAEALFNLGNLLLALGRLEEA 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  897 IKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYEQA 976
Cdd:COG3914   132 LAALRRALALN------PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEA 199

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  977 ISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAY 1040
Cdd:COG3914   200 IAAYRRALELDPD------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 63-157 7.07e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 7.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   63 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 142
Cdd:PLN03088    7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                          90
                  ....*....|....*
gi 224028289  143 ADALAAFASGLAQDP 157
Cdd:PLN03088   87 QTAKAALEKGASLAP 101
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 560-826 1.83e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 1.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  560 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 639
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  640 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGN 719
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218

                         250       260
                  ....*....|....*....|....*...
gi 224028289  799 HLAAVYMALGKYTmAFKCYEEQLDLGQK 826
Cdd:COG3914   219 NLLFALRQACDWE-VYDRFEELLAALAR 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
72-158 3.08e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 3.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                  ....*..
gi 224028289  152 GLAQDPK 158
Cdd:COG4785   167 ALELDPN 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 72-166 3.65e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 3.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914    92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                          90
                  ....*....|....*
gi 224028289  152 GLAQDPKSLQLLVGM 166
Cdd:COG3914   172 ALELDPDNAEALNNL 186
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 754-905 4.84e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 4.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  754 ASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSl 832
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPD- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  833 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-382 4.92e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.99  E-value: 4.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG2956    17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  181 PTYQQLQKMKLDKSPfvVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAYWSLGNTEKSTGYMQQD 260
Cdd:COG2956    97 ELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  261 LDVAKTLGdqtgecRAHGNLGSAFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQC 340
Cdd:COG2956   171 LKLDPDCA------RALLLLAELYLEQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 224028289  341 VLLAKQSKDELSEARelgnmgaVYIAMGDFENAVQCHEQHLK 382
Cdd:COG2956   239 LELDPSDDLLLALAD-------LLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 60-192 7.55e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 7.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYL 139
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 224028289  140 GRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD 192
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 70-159 9.24e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 9.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   70 HDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:COG4783    50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129

                          90
                  ....*....|
gi 224028289  150 ASGLAQDPKS 159
Cdd:COG4783   130 EKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
85-359 1.00e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 1.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   85 LAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLV 164
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  165 GMveaamkspmrdsleptyqqlqkmkldkspfvvvsvvGQELLTAGHHGASVVVLEAALKIGTCSLKlrgsVFSALSSAY 244
Cdd:COG0457    81 NL------------------------------------GLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLAL 120

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  245 WSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVY 324
Cdd:COG0457   121 LELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 224028289  325 TAIGDYPNALASHKQCVLLAKQSKDELSEARELGN 359
Cdd:COG0457   195 VLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 72-196 1.42e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 1.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914   126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 224028289  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD---KSPF 196
Cdd:COG3914   206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGpseLSPF 253
TPR_12 pfam13424
Tetratricopeptide repeat;
834-909 2.29e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.63  E-value: 2.29e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289   834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 72-157 2.46e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 64.21  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG5010    68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                  ....*.
gi 224028289  152 GLAQDP 157
Cdd:COG5010   148 ALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-156 4.27e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457    90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169


                  ....*
gi 224028289  152 GLAQD 156
Cdd:COG0457   170 LEAAA 174
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 845-1148 6.91e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 6.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   845 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 924
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   925 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 1001
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1002 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1066
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  1067 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 224028289  1147 FE 1148
Cdd:pfam17874  310 AE 311
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
72-161 7.04e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.95  E-value: 7.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALdDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84

                          90
                  ....*....|
gi 224028289  152 GLAQDPKSLQ 161
Cdd:COG3063    85 ALELDPSALR 94
COG3899 COG3899
Predicted ATPase [General function prediction only];
562-1146 7.32e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 67.96  E-value: 7.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  562 VAYQALGAHDRALQHYQ---------------------NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQY 620
Cdd:COG3899   655 AAYASLPPEERRALHRRiaraleargpepleerlfelaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERA 731

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  621 LRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFSKA 693
Cdd:COG3899   732 LELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEA 809

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  694 EECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALgtAYRMIQKYDKA 773
Cdd:COG3899   810 YEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA--AAAAAAAAALA 887

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  774 LGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQvygnmgitkmnmnVMEEA 853
Cdd:COG3899   888 AAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA-------------AAAAL 954

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  854 IGYFEQQLAMLQQLSGNEsvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSL 933
Cdd:COG3899   955 AAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  934 QQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEY 1013
Cdd:COG3899  1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1014 DTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNY 1093
Cdd:COG3899  1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAA 1191

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|...
gi 224028289 1094 SQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG3899  1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 504-666 7.59e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 7.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 583
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  584 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG4783    64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                  ...
gi 224028289  664 AKD 666
Cdd:COG4783   136 DPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 504-665 1.40e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 1.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 583
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  584 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG5010    84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151


                  ..
gi 224028289  664 AK 665
Cdd:COG5010   152 SP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-224 2.77e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 2.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956   124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLDKSPFVVVSVVgqeLLTAGHHGASVVVLEAALK 224
Cdd:COG2956   204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 875-997 4.08e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 4.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  875 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeaf 954
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 224028289  955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 997
Cdd:COG4235    83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
COG3899 COG3899
Predicted ATPase [General function prediction only];
926-1208 5.09e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 65.26  E-value: 5.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  926 GHRAM--GSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI-------ARDMKDRALE 996
Cdd:COG3899   712 ARRALarGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPAS 791

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  997 SDAACGLGGVYqqMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAk 1076
Cdd:COG3899   792 ARAYANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAAL- 868

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1077 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQL 1156
Cdd:COG3899   869 ALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 224028289 1157 STDYKLSLFDlqtssYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899   949 AAAAALAAAL-----ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAA 995
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 883-1029 5.94e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 5.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  883 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGE 962
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  963 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
298-624 6.61e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 64.88  E-value: 6.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  298 RHQLVlamklkdREAASSALSS--------------LGHVYTAIGDYPNALASHkqcvLLAKQSKDELSEARELGnmGAV 363
Cdd:COG3899   648 RHDLV-------REAAYASLPPeerralhrriaralEARGPEPLEERLFELAHH----LNRAGERDRAARLLLRA--ARR 714

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  364 YIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIE-----MRAYA 438
Cdd:COG3899   715 ALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRhgnppASARA 794

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  439 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 518
Cdd:COG3899   795 YANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  519 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 598
Cdd:COG3899   875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                         330       340
                  ....*....|....*....|....*.
gi 224028289  599 NLGNFHCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899   954 LAAALALAAAAAAAAAAALAAAAAAA 979
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
563-669 8.13e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 8.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  563 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 642
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 224028289  643 AHYCLGNYQEAVKYYEQDLALAKDLHD 669
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 471-626 8.99e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 8.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  471 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 550
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289  551 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4783    71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 251-500 1.03e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  251 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 330
Cdd:COG3914    55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  331 PNALASHKQCVLLakqsKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNF 410
Cdd:COG3914   129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  411 DKAMSYHNYVLELAQELmekaiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 490
Cdd:COG3914   197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263

                         250
                  ....*....|
gi 224028289  491 DTALKLHKTH 500
Cdd:COG3914   264 AELLALARAW 273
TPR_12 pfam13424
Tetratricopeptide repeat;
515-586 1.04e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 57.01  E-value: 1.04e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289   515 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 586
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 947-1146 1.31e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG3914    28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1027 aeetnNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmnDLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG3914   108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNP---DFAE---AYLNLGEALRRLGRLEEAIAALRRALEL 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 224028289 1107 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG3914   176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
957-1029 1.56e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.56e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289   957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
387-674 2.32e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 63.34  E-value: 2.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  387 LGNKREEARAYsNLGSAYHYRRN--FDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI- 463
Cdd:COG3899   697 RAGERDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAr 775

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  464 ------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYH 537
Cdd:COG3899   776 alaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELL 853

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  538 RQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYV 611
Cdd:COG3899   854 REALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL 933

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  612 QAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 674
Cdd:COG3899   934 AAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 549-695 2.41e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.43  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  549 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 628
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  629 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEE 695
Cdd:COG5010    87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 129-501 3.23e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 3.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  129 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVgmveaamkspmrdsleptyqqlqkmkldkspfvvvsvvgqellt 208
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-------------------------------------------- 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  209 aghhgasvvvleaalkigtcslklrgsvfsALSSAYWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSKG 288
Cdd:COG2956    47 ------------------------------ALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAG 90

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  289 NYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMG 368
Cdd:COG2956    91 LLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------AHAYCELAELYLEQG 158

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  369 DFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAmsyhnyvLELAQELMEKAIE-MRAYAGLGHAARCM 447
Cdd:COG2956   159 DYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEA-------IAALERALEQDPDyLPALPRLAELYEKL 225

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 224028289  448 QDLERAKQYHEQQLGIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 501
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-146 3.81e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 3.81e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289    31 ASAPIPLFGADTIGQrsPDGPvlSKAEFVEKVRQS---------NQACHDGDFHTAIVLYNEALAVDPqNCILYSNRSAA 101
Cdd:TIGR00990   95 APKNAPVEPADELPE--IDES--SVANLSEEERKKyaaklkekgNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAAC 169

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 224028289   102 YMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADAL 146
Cdd:TIGR00990  170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
TPR_12 pfam13424
Tetratricopeptide repeat;
552-626 4.22e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.09  E-value: 4.22e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289   552 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
523-629 6.17e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 6.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  523 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 602
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 224028289  603 FHCSRGEYVQAAPYYEQYLRLAPDLQD 629
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 956-1107 6.50e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 6.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  956 KAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETNNPt 1034
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDEP- 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289 1035 cqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLaaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1107
Cdd:COG4783    73 ---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2088-2336 1.17e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2088 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2165
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2166 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2245
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2246 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2325
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 224028289  2326 YSSAGSARSSP 2336
Cdd:pfam05109  611 GTSSTPVVTSP 621
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 800-944 1.55e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 1.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  800 LAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRA 879
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289  880 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 944
Cdd:COG4783    75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 785-907 1.58e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 1.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  785 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQqlaML 864
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 224028289  865 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 907
Cdd:COG4235    79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_12 pfam13424
Tetratricopeptide repeat;
357-426 1.74e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.55  E-value: 1.74e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224028289   357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 834-990 1.75e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 913
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  914 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:COG4783    70 -DEPEARLNLGLALLKAGDYDEALALLEK----ALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 957-1194 1.99e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 1.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETNNPTCQ 1036
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1037 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1116
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNP--DNAEA----LFNLGNLLLALGRLEEALAALRRALALNP------DF 145

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 224028289 1117 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1194
Cdd:COG3914   146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 743-904 2.43e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  743 LAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLD 822
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  823 LgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:COG5010    83 L-----DPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQR 147


                  ..
gi 224028289  903 YL 904
Cdd:COG5010   148 AL 149
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 290-459 2.44e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvLLAKQSkdelSEARELGNMGAVYIAMGD 369
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRR--ALALNP----DNAEALFNLGNLLLALGR 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  370 FENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQD 449
Cdd:COG3914   128 LEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGR 195

                         170
                  ....*....|
gi 224028289  450 LERAKQYHEQ 459
Cdd:COG3914   196 LEEAIAAYRR 205
COG3899 COG3899
Predicted ATPase [General function prediction only];
290-624 2.63e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 59.87  E-value: 2.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYiaMGD 369
Cdd:COG3899   728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  370 FENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQD 449
Cdd:COG3899   806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  450 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 523
Cdd:COG3899   886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  524 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 603
Cdd:COG3899   966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044

                         330       340
                  ....*....|....*....|.
gi 224028289  604 HCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899  1045 LLAALAAAAAAAAAAAALAAA 1065
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
886-989 2.74e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 2.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  886 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 965
Cdd:COG3063     1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 224028289  966 LHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 72-159 3.73e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4235    31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110


                  ....*...
gi 224028289  152 GLAQDPKS 159
Cdd:COG4235   111 LLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 77-172 3.99e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 3.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90
                  ....*....|....*.
gi 224028289  157 PKSLQLLVGMVEAAMK 172
Cdd:COG4235    82 PDNPEALYLLGLAAFQ 97
TPR_12 pfam13424
Tetratricopeptide repeat;
915-989 4.63e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.39  E-value: 4.63e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289   915 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAF--NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 392-546 5.32e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 5.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 470
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289  471 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 546
Cdd:COG4783    69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
475-543 5.80e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 5.80e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224028289   475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 543
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-259 7.11e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 7.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLK 231
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         170       180
                  ....*....|....*....|....*...
gi 224028289  232 LRgsvfsALSSAYWSLGNTEKSTGYMQQ 259
Cdd:COG2956   248 LL-----ALADLLERKEGLEAALALLER 270
TPR_12 pfam13424
Tetratricopeptide repeat;
313-386 8.83e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 8.83e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289   313 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 514-626 9.89e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 9.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  514 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 224028289  594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4235    85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
529-763 1.77e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 1.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  529 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 601
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  602 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 681
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  682 LAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALG 761
Cdd:COG4785   149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221


                  ..
gi 224028289  762 TA 763
Cdd:COG4785   222 LA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 672-823 2.87e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  672 SQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrr 751
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224028289  752 lEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDL 823
Cdd:COG4783    71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
803-912 2.91e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 2.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  803 VYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 882
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL-----DPD-NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64

                          90       100       110
                  ....*....|....*....|....*....|
gi 224028289  883 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG3063    65 LAELLLELGDYDEALAYLERALELDPSALR 94
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2185-2342 5.44e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 55.31  E-value: 5.44e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2185 GQVSKSNNPEDgVQAPSSTAvfRASETSAFSRPVLSHQKSQPSPVTvkPKPPARSSSLPKVSSGYSSPTTSEMSikdsPS 2264
Cdd:pfam05109  447 GLPSSTHVPTN-LTAPASTG--PTVSTADVTSPTPAGTTSGASPVT--PSPSPRDNGTESKAPDMTSPTSAVTT----PT 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2265 QHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSP---ADAPD 2341
Cdd:pfam05109  518 PNATSPTPAVTTPTPNATSPTLG---KTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPT 594


                   .
gi 224028289  2342 I 2342
Cdd:pfam05109  595 V 595
TPR_12 pfam13424
Tetratricopeptide repeat;
999-1069 6.01e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.92  E-value: 6.01e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289   999 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 1069
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 640-786 9.64e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 9.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGN 719
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 962-1198 9.71e-07

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.54  E-value: 9.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  962 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1030
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1031 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1104
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1105 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1181
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 224028289 1182 LGHHDEALAVAERGRTR 1198
Cdd:NF040586  660 LGDADEARELAREVLDR 676
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
966-1068 1.02e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  966 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETNNPtcqgRAYGNLGL 1045
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67

                          90       100
                  ....*....|....*....|...
gi 224028289 1046 TYESLGTFERAVVYQEQHLSIAA 1068
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDP 90
TPR_12 pfam13424
Tetratricopeptide repeat;
1079-1148 1.11e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.11e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224028289  1079 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1148
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 516-626 1.22e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 595
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 224028289  596 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 626
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2198-2345 1.33e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 54.15  E-value: 1.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2198 QAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLPKVSSG-YSSPTTSEMSIKDSPSQHSgrPSP---G 2273
Cdd:pfam05109  423 KAPESTTTSPTLNTTGFAAP--NTTTGLPSSTHVPTNLTAPASTGPTVSTAdVTSPTPAGTTSGASPVTPS--PSPrdnG 498

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289  2274 CDSQTSQLDQPLFKLKYPS----SPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSPADAPDIDKL 2345
Cdd:pfam05109  499 TESKAPDMTSPTSAVTTPTpnatSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTL 574
TPR_7 pfam13176
Tetratricopeptide repeat;
637-670 1.43e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.76  E-value: 1.43e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 224028289   637 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 670
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 421-584 1.50e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  421 LELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 500
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  501 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 580
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 224028289  581 LNIA 584
Cdd:COG5010   149 LGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 301-464 1.54e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  301 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQH 380
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  381 LKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKAIEmrAYAGLGHAARCMQDLERAKQYHEQQ 460
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 224028289  461 LGIA 464
Cdd:COG5010   149 LGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
715-786 1.73e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 1.73e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289   715 RALGNLGDIFICKKDINGAIKFYEQQLGLAHQV--KDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 581-744 1.76e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  581 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 660
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  661 LALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 224028289  741 LGLA 744
Cdd:COG5010   149 LGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
81-159 1.83e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 1.83e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289   81 YNEALAvDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 159
Cdd:COG4785    63 IDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
TPR_7 pfam13176
Tetratricopeptide repeat;
959-994 1.91e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.91e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 224028289   959 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 994
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-466 2.02e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  311 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelSEARELgnMGAVYIAMGDFENAVQCHEQHLKIAKDlgnk 390
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289  391 reEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 83-172 2.56e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 2.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   83 EALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                          90
                  ....*....|
gi 224028289  163 LVGMVEAAMK 172
Cdd:COG3914   149 YLNLGEALRR 158
TPR_7 pfam13176
Tetratricopeptide repeat;
879-911 2.78e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.99  E-value: 2.78e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 224028289   879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 911
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
483-589 3.11e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  483 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 562
Cdd:COG3063     1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 224028289  563 AYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
638-706 3.30e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 3.30e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224028289   638 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQS 706
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 851-960 3.82e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.06  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  851 EEAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAM 930
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 224028289  931 GSLQQALVCFEKrLVVAHELGEAFNKAQAY 960
Cdd:COG1729    81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
966-1190 4.24e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.30  E-value: 4.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  966 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQ--IAEETNNPTcQGRAYGNL 1043
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAerIDRALALPD-LAQLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1044 GLTYESLGTFERAVvyqeQHLSIAAQMN-DLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHG 1122
Cdd:COG4785    80 GVAYDSLGDYDLAI----ADFDQALELDpDLAE---AYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLN 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289 1123 LGLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1190
Cdd:COG4785   147 RGIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
TPR_12 pfam13424
Tetratricopeptide repeat;
434-506 4.51e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 4.51e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289   434 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 506
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 915-1019 5.02e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 5.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  915 DQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdra 994
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPD----- 83

                          90       100
                  ....*....|....*....|....*
gi 224028289  995 lESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG4235    84 -NPEALYLLGLAAFQQGDYAEAIAA 107
TPR_12 pfam13424
Tetratricopeptide repeat;
1038-1109 5.65e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 5.65e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  1038 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1109
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
363-467 5.70e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 5.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  363 VYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvlelaqelmEKAIEM-----RAY 437
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL------------EKALKLdpnnaEAL 62

                          90       100       110
                  ....*....|....*....|....*....|
gi 224028289  438 AGLGHAARCMQDLERAKQYHEQQLGIAEDL 467
Cdd:COG3063    63 LNLAELLLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
101-190 5.81e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 5.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALaAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|
gi 224028289  181 PTYQQLQKMK 190
Cdd:COG3063    80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
606-707 6.10e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  606 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 685
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70

                          90       100
                  ....*....|....*....|..
gi 224028289  686 ALLNFSKAEECQKYLLSLAQSL 707
Cdd:COG3063    71 ELGDYDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
878-909 6.60e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 6.60e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 224028289   878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
878-909 1.01e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 44.31  E-value: 1.01e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 224028289   878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
274-346 1.07e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 1.07e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289   274 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 346
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 907-1067 1.13e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  907 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 986
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  987 ARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEetNNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSI 1066
Cdd:COG5010    84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNP----NAYSNLAALLLSLGQDDEAKAALQRALGT 151


                  .
gi 224028289 1067 A 1067
Cdd:COG5010   152 S 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-944 1.61e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  851 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAM 930
Cdd:COG5010    71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALA------LSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....
gi 224028289  931 GSLQQALVCFEKRL 944
Cdd:COG5010   136 GQDDEAKAALQRAL 149
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 661-823 1.63e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  661 LALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  741 LGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQ 820
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ...
gi 224028289  821 LDL 823
Cdd:COG5010   149 LGT 151
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 804-905 1.64e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 1.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  804 YMALGKYTMAFKCYEEQLdlgQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDrgrAYGNL 883
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPD---ALLKL 73

                          90       100
                  ....*....|....*....|..
gi 224028289  884 GDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG1729    74 GLSYLELGDYDKARATLEELIK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1006-1110 1.72e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1006 VYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLAAktvsYSSLGR 1085
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67

                          90       100
                  ....*....|....*....|....*
gi 224028289 1086 THHALQNYSQAVMYLQEGLRLAEQL 1110
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 873-1027 1.81e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  873 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGE 952
Cdd:COG5010    10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQLDP 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289  953 afNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 1027
Cdd:COG5010    86 --NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 878-902 2.23e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.23e-05
                            10        20
                    ....*....|....*....|....*
gi 224028289    878 RAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
COG3899 COG3899
Predicted ATPase [General function prediction only];
947-1208 2.35e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 2.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  947 AHELGEAfnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhqldlqi 1026
Cdd:COG3899   698 AGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL------- 767

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1027 aeetnnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHhaLQNYSQAVMYLQEGLRL 1106
Cdd:COG3899   768 --------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALAL 819

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETI-----RHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1181
Cdd:COG3899   820 AERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETgdaalALLALAAAAAAAAAAAALAAAAAAAARLLAA 899

                         250       260
                  ....*....|....*....|....*..
gi 224028289 1182 LGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899   900 AAAALAAAAAAAALAAAELARLAAAAA 926
TPR_7 pfam13176
Tetratricopeptide repeat;
596-631 2.43e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 43.30  E-value: 2.43e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 224028289   596 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 631
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_12 pfam13424
Tetratricopeptide repeat;
754-826 2.66e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 2.66e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224028289   754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQK 826
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
392-466 3.14e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 3.14e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289   392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELM--EKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PHA03378 PHA03378
EBNA-3B; Provisional
 2110-2416 3.17e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 49.68  E-value: 3.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2110 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2183
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2184 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2255
Cdd:PHA03378  597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2256 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2324
Cdd:PHA03378  671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2325 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2404
Cdd:PHA03378  746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                         330
                  ....*....|..
gi 224028289 2405 EEGVDKLELKEL 2416
Cdd:PHA03378  817 QQGPTKQILRQL 828
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
875-1025 3.37e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 3.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  875 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRAMGSLQQALvcfekrlvvahelgEAF 954
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAAL--------------EDF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  955 NKA--------QAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL-------ESDAACGL-------GGVYQQMGE 1012
Cdd:COG4785   131 DRAleldpdyaYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwlylaerKLDPEKALallledwATAYLLQGD 210

                         170
                  ....*....|...
gi 224028289 1013 YDTALQYHQLDLQ 1025
Cdd:COG4785   211 TEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
727-827 3.67e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  727 KKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 806
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71

                          90       100
                  ....*....|....*....|.
gi 224028289  807 LGKYTMAFKCYEEQLDLGQKL 827
Cdd:COG3063    72 LGDYDEALAYLERALELDPSA 92
TPR_7 pfam13176
Tetratricopeptide repeat;
357-390 4.33e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.53  E-value: 4.33e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 224028289   357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNK 390
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 2098-2327 4.64e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 49.00  E-value: 4.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2098 SSKGSISTPNSPVKMTlIPSPNSPFQKVGKLASSDTGESDQSSTETDstvKSQEESNPKlDPQE------LAQKILEETQ 2171
Cdd:pfam03154   57 SKAESMKKSSKKIKEE-APSPLKSAKRQREKGASDTEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGS 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2172 SHLIAVERLQRSGGQVSKSnnPEDGVQAPSSTAVFRASETSAfsrPVLSHQKSQPSPVTVKPKPPARSSSLPKVSSGYSS 2251
Cdd:pfam03154  132 SDPKDIDQDNRSTSPSIPS--PQDNESDSDSSAQQQILQTQP---PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  2252 PTTSEMSIKDSPSQHSGRPSP-GCDSQTSQLDQPlfKLKYPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYS 2327
Cdd:pfam03154  207 PPQGSPATSQPPNQTQSTAAPhTLIQQTPTLHPQ--RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHS 281
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
647-744 5.81e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  647 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECQKyllslAQSLNNSQAkfRALGNLGDIFIC 726
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 224028289  727 KKDINGAIKFYEQQLGLA 744
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
851-944 5.98e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 5.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  851 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRAM 930
Cdd:COG3063     9 EEAEEYYEKALELDP---------DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....
gi 224028289  931 GSLQQALVCFEKRL 944
Cdd:COG3063    73 GDYDEALAYLERAL 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 373-496 7.97e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 7.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  373 AVQCHEQHLKiakdlgNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLER 452
Cdd:COG4235     2 AIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEE 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 224028289  453 AKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKL 496
Cdd:COG4235    70 AEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 77-185 7.98e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 7.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG5010    39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118

                          90       100
                  ....*....|....*....|....*....
gi 224028289  157 PKSLQLLVGMVEAAMKSPMRDSLEPTYQQ 185
Cdd:COG5010   119 PDNPNAYSNLAALLLSLGQDDEAKAALQR 147
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1016-1195 8.27e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 8.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1016 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsYSSLGRTHHALQNYSQ 1095
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1096 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1175
Cdd:COG3914    97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152

                         170       180
                  ....*....|....*....|
gi 224028289 1176 QRVLVSLGHHDEALAVAERG 1195
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRA 172
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 359-472 8.78e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKamsyhnyvlelAQELMEKAIEM---- 434
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEE-----------AEELLERALALdpdn 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 224028289  435 -RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 472
Cdd:COG4235    85 pEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 612-744 9.57e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 9.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  612 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFS 691
Cdd:COG4235     1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 224028289  692 KAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG4235    69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 316-434 1.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 1.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEAR 395
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERALALDPD------NPE 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 224028289  396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQE-----LMEKAIEM 434
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 65-143 1.12e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.05  E-value: 1.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   65 SNQAchDGDFHTAIVLYNEALAV--DP--QNCILYsNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLG 140
Cdd:PRK02603   44 SAQA--DGEYAEALENYEEALKLeeDPndRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120


                  ...
gi 224028289  141 RHA 143
Cdd:PRK02603  121 EKA 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
323-429 1.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  323 VYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQChEQHLKIAKDlgnkreEARAYSNLGS 402
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 224028289  403 AYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2065-2340 1.31e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2065 EPLATYQENRNTCFSPDHKQ-PQPGTAGgmrvSVSSKGSISTPNSPVkmtliPSPNSPFQKVGKLASSDTGESDQSSTET 2143
Cdd:PHA03307   85 RSTPTWSLSTLAPASPAREGsPTPPGPS----SPDPPPPTPPPASPP-----PSPAPDLSEMLRPVGSPGPPPAASPPAA 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2144 DStVKSQEESNPKlDPQELAqkileetqSHLIAVERLQRSGGQVSKSNnpedgvqaPSSTAVFRASETSAFSRPVLSHQK 2223
Cdd:PHA03307  156 GA-SPAAVASDAA-SSRQAA--------LPLSSPEETARAPSSPPAEP--------PPSTPPAAASPRPPRRSSPISASA 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 2224 SQPSPVtvkpkpPARSSSLPKVSSGYSSPTTSEMSIKDSPSQHSGRPSPGCDSQTSQLDQPLFKLKYPS--SPYSAHISK 2301
Cdd:PHA03307  218 SSPAPA------PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSrpGPASSSSSP 291

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 224028289 2302 SPRNMSPSSGHqSPAGSAPSPALSYSSAGSARSSPADAP 2340
Cdd:PHA03307  292 RERSPSPSPSS-PGSGPAPSSPRASSSSSSSRESSSSST 329
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 71-159 1.37e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   71 DGDFHTAIVLYNEALAVDPQNCIL---YSNRSAAYMKIQQYDKALD---DAIKARLLNPKWPKAYFRQGVALQYLGRHAD 144
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEafeKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85

                          90
                  ....*....|....*
gi 224028289  145 ALAAFASGLAQDPKS 159
Cdd:COG1729    86 ARATLEELIKKYPDS 100
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
447-544 1.39e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  447 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 526
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 224028289  527 LGMYDQAVKYHRQELQIS 544
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 350-666 1.44e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 1.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  350 ELSEARELGNMGAVYIA--MGDFENAvqchEQHLKIAKDLGNKREEARAYSnLGSAYHYRRNFDKAmsyhnyvLELAQEL 427
Cdd:COG3071    44 EHSEAPLLAYLLAARAAqaLGDYERR----DEYLAQALELAPEAELAVLLT-RAELLLDQGQAEQA-------LATLEAL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  428 MEKA--------IEMRAYAGLGH---AARCMQDLERAKQYHEQQlgiAEDLKDRAAEGRassnlgiIHQMKGDYDtALKL 496
Cdd:COG3071   112 RAGAprhpqvlrLLLQAYRQLGDweeLLELLPALRKHKALSAEE---AQALERRAYLGL-------LRQAARDAE-ALKA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  497 HKTHLCIAQELSDYAAQGRAygnmgNAYNALGMYDQAvkyhRQELQismevndRASQASTHGNLAVAYQALGAHD--RAL 574
Cdd:COG3071   181 LWKALPRAERRDPELAAAYA-----RALIALGDHDEA----ERLLR-------EALKRQWDPRLVRLYGRLQGGDpaKQL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  575 QHYQNHLniARELRDiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkvCHNLGYAHYCLGNYQEAV 654
Cdd:COG3071   245 KRAEKWL--KKHPND----PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA-------YAELARLLEQLGDPEEAA 311

                         330
                  ....*....|..
gi 224028289  655 KYYEQDLALAKD 666
Cdd:COG3071   312 EHYRKALALALG 323
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
72-170 1.46e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVAlQYLGRHADALAAfas 151
Cdd:COG4785   121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALAL--- 196

                          90
                  ....*....|....*....
gi 224028289  152 gLAQDPKSLQLLVGMVEAA 170
Cdd:COG4785   197 -LLEDWATAYLLQGDTEEA 214
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 475-683 1.68e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 549
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  550 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 624
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  625 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 683
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 635-666 1.70e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 1.70e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 224028289   635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
361-498 1.71e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.29  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  361 GAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLEL----AQELMEKAIemrA 436
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALELdpdyAYAYLNRGI---A 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289  437 YAGLGHAARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 498
Cdd:COG4785   151 LYYLGRYELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
COG3899 COG3899
Predicted ATPase [General function prediction only];
203-615 1.88e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.16  E-value: 1.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  203 GQELLTAGHHGASVVVLEAALK----IGTCSLKL---RGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 275
Cdd:COG3899   752 AEALYLAGRFEEAEALLERALAaralAALAALRHgnpPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  276 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGhvyTAIGDYPNALASHKQCVLLAKQSKDELSEAR 355
Cdd:COG3899   832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA---AAAAAAAALAAAAAAAARLLAAAAAALAAAA 908

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  356 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRnFDKAMSYHNYVLELAQELMEKAIEMR 435
Cdd:COG3899   909 AAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALA-AAAAAAAAAALAAAAAAAAAAAAAAA 987

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG3899   988 AAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAA 1067

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAY---QALGAHDRALQHYQNHLNIARELRDIQS 592
Cdd:COG3899  1068 LLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALaaaLAALALAAAARAAAALLLLAAALALALA 1147

                         410       420
                  ....*....|....*....|...
gi 224028289  593 EARALSNLGNFHCSRGEYVQAAP 615
Cdd:COG3899  1148 ALLLLAALLLALALLLLALAALA 1170
TPR_7 pfam13176
Tetratricopeptide repeat;
516-551 2.56e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 2.56e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 224028289   516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 551
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 878-905 3.58e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 3.58e-04
                           10        20
                   ....*....|....*....|....*...
gi 224028289   878 RAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
833-984 4.46e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 4.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  833 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgnesVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYlsvaqsLNR 912
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALEL---------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRA------LEL 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  913 MQDQAKAYRGLGNGHRAMGSLQQALVCFEK----------RLVVAHELGEAFNKAQAYGEL----GSLHSQLGNYEQAIS 978
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKaleldpndpeRALWLYLAERKLDPEKALALLledwATAYLLQGDTEEARE 216


                  ....*.
gi 224028289  979 CLERQL 984
Cdd:COG4785   217 LFKLAL 222
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 891-982 4.96e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 4.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  891 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRAMGSLQQALVCFEKrlvVAHELGEAFNKAQAYGELGSLHSQL 970
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80

                          90
                  ....*....|..
gi 224028289  971 GNYEQAISCLER 982
Cdd:COG1729    81 GDYDKARATLEE 92
TPR_8 pfam13181
Tetratricopeptide repeat;
957-989 5.09e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.30  E-value: 5.09e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 224028289   957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
479-589 5.20e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  479 NLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVkyhrQELQISMEVNDRASQAstHG 558
Cdd:COG4785    78 ERGVAYDSLGDYDLAIAD------FDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----EDFDRALELDPDYAYA--YL 145

                          90       100       110
                  ....*....|....*....|....*....|.
gi 224028289  559 NLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPE 176
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 635-666 5.70e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.70e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 224028289    635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-987 5.80e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 5.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  851 EEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAM 930
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289  931 GSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:COG5010   102 GDKDEAKEYYEK----ALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1016-1143 6.63e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 6.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1016 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQ 1095
Cdd:COG5010    33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 224028289 1096 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1143
Cdd:COG5010   107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 309-588 7.06e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 44.22  E-value: 7.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   309 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLG 388
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   389 NKREEA--RAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 465
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   466 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 539
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289   540 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 588
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 878-1206 1.10e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.52  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  878 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 943
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  944 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 1014
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1015 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1077
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1078 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1148
Cdd:NF040586  656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1149 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1206
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1008-1140 1.15e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1008 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1087
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 224028289 1088 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1140
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 394-426 1.18e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.18e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 224028289    394 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 957-990 1.18e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.18e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 224028289    957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 467-600 1.25e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  467 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 546
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 224028289  547 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 600
Cdd:COG4235    82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-163 1.52e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457   124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203

                          90
                  ....*....|..
gi 224028289  152 GLAQDPKSLQLL 163
Cdd:COG0457   204 EQALRKKLAILT 215
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 505-626 1.62e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  505 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 576
Cdd:PRK11447  294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 224028289  577 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:PRK11447  374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
Nup153 pfam08604
Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and ...
 2200-2335 1.62e-03

Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and Nup154 from fission yeast. These have been demonstrated to be functionally equivalent.


Pssm-ID: 462533 [Multi-domain]  Cd Length: 507  Bit Score: 43.72  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  2200 PSSTavfRAS--ETSAFSRPVL--SHQKSQPSPVTVKPKPPARSSSLPKVSSGYSspTTSEmsIKDSPSQHSG---RPSP 2272
Cdd:pfam08604    1 PSTS---RSAlnFQDVLTRPSLhrSHLNFTVLDSPALFCQPSTSTAFPIGSSGFS--LVKE--IKDSTSQHDDdniSTTS 73

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  2273 GCDSQTSQLDQPLfklkypSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSS 2335
Cdd:pfam08604   74 GFSSRASDKDIPV------SKTVSLPLLWSPEAERSHSLSQHSASSSKKPAFNLSAFGTLSPS 130
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 515-539 1.93e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 1.93e-03
                            10        20
                    ....*....|....*....|....*
gi 224028289    515 RAYGNMGNAYNALGMYDQAVKYHRQ 539
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
519-624 2.03e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.56  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  519 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 593
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 224028289  594 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 624
Cdd:COG4700   160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 73-149 2.20e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 2.20e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224028289   73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:NF040959  120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 957-1019 2.27e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 2.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224028289  957 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG1729    30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
TPR_1 pfam00515
Tetratricopeptide repeat;
594-626 2.30e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.30e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 224028289   594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 652-776 2.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  652 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAkfraLGNLGDIFICKKDIN 731
Cdd:COG4235     1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 224028289  732 GAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGY 776
Cdd:COG4235    69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 737-862 2.64e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 2.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKC 816
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD------PNNPELYYNLALLYSRSGDKDEAKEY 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 224028289  817 YEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLA 862
Cdd:COG5010   111 YEKALAL-----SPD-NPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 354-386 2.89e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 2.89e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 224028289    354 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
515-543 3.00e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 3.00e-03
                           10        20
                   ....*....|....*....|....*....
gi 224028289   515 RAYGNMGNAYNALGMYDQAVKYHRQELQI 543
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 562-659 3.01e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  562 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 641
Cdd:COG1729     1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74

                          90
                  ....*....|....*...
gi 224028289  642 YAHYCLGNYQEAVKYYEQ 659
Cdd:COG1729    75 LSYLELGDYDKARATLEE 92
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
699-905 3.33e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 3.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  699 YLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRR----------------LEASAYAALGT 762
Cdd:COG4785     2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAaaalaaeridralalpDLAQLYYERGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  763 AYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGI 842
Cdd:COG4785    82 AYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALEL-----DPDY-AYAYLNRGI 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  843 TKMNMNVMEEAIGYFEQQLAMLQQ-------LSGNESVLDRGRAYGNL----GDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG4785   150 ALYYLGRYELAIADLEKALELDPNdperalwLYLAERKLDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 110-225 3.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  110 KALDDAIKArllNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkM 189
Cdd:COG4235     4 ARLRQALAA---NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA--L 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 224028289  190 KLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 225
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
ycf3 CHL00033
photosystem I assembly protein Ycf3
 550-664 3.65e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.76  E-value: 3.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  550 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 628
Cdd:CHL00033   31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 224028289  629 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 664
Cdd:CHL00033  108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
ycf3 CHL00033
photosystem I assembly protein Ycf3
 485-626 3.93e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  485 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 562
Cdd:CHL00033   46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224028289  563 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 626
Cdd:CHL00033  115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
TPR_1 pfam00515
Tetratricopeptide repeat;
635-666 4.27e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.27e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 224028289   635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 751-907 4.29e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.82  E-value: 4.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  751 RLEASAYAALG---TAYRMIQKYDKALGYHTQELE-----VYQEL---------------SDLPGECRAHGHLAAVY--- 804
Cdd:COG3071   123 RLLLQAYRQLGdweELLELLPALRKHKALSAEEAQalerrAYLGLlrqaardaealkalwKALPRAERRDPELAAAYara 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  805 -MALGKYTMAFKCYEEQLDLGQklkDPSLeAQVYGNMGITKMnmnvmEEAIGYFEQ----------------QLAMLQQL 867
Cdd:COG3071   203 lIALGDHDEAERLLREALKRQW---DPRL-VRLYGRLQGGDP-----AKQLKRAEKwlkkhpndpdlllalgRLCLRNQL 273

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 224028289  868 SGN-----ESVL---DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 907
Cdd:COG3071   274 WGKareylEAALalrPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
TPR_7 pfam13176
Tetratricopeptide repeat;
556-589 4.48e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 4.48e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 224028289   556 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
TPR_10 pfam13374
Tetratricopeptide repeat;
638-668 5.12e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.71  E-value: 5.12e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 224028289   638 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 668
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
TPR_12 pfam13424
Tetratricopeptide repeat;
92-154 5.56e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 5.56e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224028289    92 CILYSNRSAAYMKIQQYDKALDDAIKA-----RLLNPKWPK---AYFRQGVALQYLGRHADALAAFASGLA 154
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKAleiarRLLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALA 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
81-166 7.13e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.67  E-value: 7.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289   81 YNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSL 160
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107


                  ....*.
gi 224028289  161 QLLVGM 166
Cdd:COG4785   108 EAYNNR 113
TPR_7 pfam13176
Tetratricopeptide repeat;
316-350 7.33e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.36  E-value: 7.33e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 224028289   316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDE 350
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1036-1199 9.08e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 9.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1036 QGRAYGNLGLTYESLGTFERAVVYQEQhlSIAAQMNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrRED 1115
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEK--ALELDPDNPEA----FALLGEILLQLGDLDEAIVLLHEALEL------DPD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1116 EAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqlstdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERG 1195
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKA------------------LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132


                  ....
gi 224028289 1196 RTRA 1199
Cdd:COG4783   133 LELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 283-385 9.18e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 9.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289  283 AFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGA 362
Cdd:COG5010    63 LYNKLGDFEESLALLEQ----ALQLDPNNPE--LYYNLALLYSRSGDKDEAKEYYEKALALSPDN------PNAYSNLAA 130

                          90       100
                  ....*....|....*....|...
gi 224028289  363 VYIAMGDFENAVQCHEQHLKIAK 385
Cdd:COG5010   131 LLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1059-1194 9.90e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 9.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224028289 1059 YQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQH 1138
Cdd:COG5010    36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP------NNPELYYNLALLYSRSGDKDEAKE 109

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 224028289 1139 QLYRAsalfetirheaqlstdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAER 1194
Cdd:COG5010   110 YYEKA------------------LALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
TPR_1 pfam00515
Tetratricopeptide repeat;
354-386 9.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 9.96e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 224028289   354 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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