NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|237512959|ref|NP_001153626|]
View 

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform 2 [Homo sapiens]

Protein Classification

glycosyltransferase family 54 protein( domain architecture ID 10519914)

glycosyltransferase family 54 protein similar to alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase that participates in the transfer of N-acetylglucosamine (GlcNAc) to the core mannose residues of N-linked glycans

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 7-252 2.35e-146

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


:

Pssm-ID: 461384  Cd Length: 278  Bit Score: 417.10  E-value: 2.35e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959    7 VSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESY 86
Cdd:pfam04666  33 VSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLSY 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959   87 YPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLG 166
Cdd:pfam04666 113 YPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQLG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  167 FIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQK 246
Cdd:pfam04666 193 FIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQD 272


                  ....*.
gi 237512959  247 LTDKDY 252
Cdd:pfam04666 273 LKDKDF 278
 
Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 7-252 2.35e-146

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


Pssm-ID: 461384  Cd Length: 278  Bit Score: 417.10  E-value: 2.35e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959    7 VSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESY 86
Cdd:pfam04666  33 VSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLSY 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959   87 YPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLG 166
Cdd:pfam04666 113 YPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQLG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  167 FIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQK 246
Cdd:pfam04666 193 FIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQD 272


                  ....*.
gi 237512959  247 LTDKDY 252
Cdd:pfam04666 273 LKDKDF 278
PGAP4-like cd21105
Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI ...
 8-203 2.26e-09

Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. This family also includes uncharacterized fungal proteins with similarity to PGAP4.


Pssm-ID: 409189  Cd Length: 364  Bit Score: 58.54  E-value: 2.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959   8 SIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVhgVVANLEkEFSKeissgLVEVISPPESYY 87
Cdd:cd21105   70 DLCIVIIAVNRRPHSYLTQTVASLLRGIQSDLASYSNVSLSICNTESPPA--TFSELE-RLSE-----LVPVDSIKRRLE 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  88 PDLTNLKETFGdskervrwrtKQNLDYCFLMMYAQEKGIYYI-QLEDDIIVKQNYFNTIKNFALQLS------------- 153
Cdd:cd21105  142 EDKDDSSSWFR----------KETLDYAYCLRACTESGSRYTlLLEDDAIATPRFLQRLLSLLEDLEsprrkwlfvklyy 211

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 237512959 154 --------SEEWMILEFSQLGFIGKMFqapdLTLIVeFIFMFYKEKPIDWLLDHILWV 203
Cdd:cd21105  212 peywrgfeLYFPSILELVSLSVLAGLL----TTLLW-LALLRRLRRPFPLRTNLILVF 264
 
Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 7-252 2.35e-146

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


Pssm-ID: 461384  Cd Length: 278  Bit Score: 417.10  E-value: 2.35e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959    7 VSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESY 86
Cdd:pfam04666  33 VSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLSY 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959   87 YPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLG 166
Cdd:pfam04666 113 YPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQLG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  167 FIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQK 246
Cdd:pfam04666 193 FIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQD 272


                  ....*.
gi 237512959  247 LTDKDY 252
Cdd:pfam04666 273 LKDKDF 278
PGAP4-like cd21105
Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI ...
 8-203 2.26e-09

Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. This family also includes uncharacterized fungal proteins with similarity to PGAP4.


Pssm-ID: 409189  Cd Length: 364  Bit Score: 58.54  E-value: 2.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959   8 SIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVhgVVANLEkEFSKeissgLVEVISPPESYY 87
Cdd:cd21105   70 DLCIVIIAVNRRPHSYLTQTVASLLRGIQSDLASYSNVSLSICNTESPPA--TFSELE-RLSE-----LVPVDSIKRRLE 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  88 PDLTNLKETFGdskervrwrtKQNLDYCFLMMYAQEKGIYYI-QLEDDIIVKQNYFNTIKNFALQLS------------- 153
Cdd:cd21105  142 EDKDDSSSWFR----------KETLDYAYCLRACTESGSRYTlLLEDDAIATPRFLQRLLSLLEDLEsprrkwlfvklyy 211

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 237512959 154 --------SEEWMILEFSQLGFIGKMFqapdLTLIVeFIFMFYKEKPIDWLLDHILWV 203
Cdd:cd21105  212 peywrgfeLYFPSILELVSLSVLAGLL----TTLLW-LALLRRLRRPFPLRTNLILVF 264
PGAP4-like_fungal cd22189
uncharacterized fungal proteins similar to Post-GPI attachment to proteins factor 4; This ...
 12-136 1.85e-07

uncharacterized fungal proteins similar to Post-GPI attachment to proteins factor 4; This subfamily contains uncharacterized fungal proteins with similarity to animal post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. Proteins from this subfamily contain the putative catalytic site of PGAP4 and may have similar activities.


Pssm-ID: 409190  Cd Length: 375  Bit Score: 52.93  E-value: 1.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237512959  12 GIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETD----IDY----VHGVVANLEkefskeissgLVEVISPP 83
Cdd:cd22189   78 GIPTVKRPGEQYLDTTVGSLLDGLTPEERADIHLVVLIAHTDptqhPAYgepwLHNLADEVL----------TYNVSDED 147

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 237512959  84 ESYypdLTNLKETFGDskervrWRTKQNLDYCFLMMYAQEKGIYYIQ-LEDDII 136
Cdd:cd22189  148 LEH---LRELEEEGGN------FREKGLFDYTYLLEACYETGAPYIAmFEDDVV 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH