|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
301-571 |
8.17e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 8.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 301 KEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQ 380
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 381 RELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKL 460
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 461 EEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstQLESSLNKYNT 540
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA----ELLEEAALLEA 477
|
250 260 270
....*....|....*....|....*....|.
gi 237858621 541 SQQVIQDLNKEIALQKESLMSLQAQLDKALQ 571
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
376-714 |
1.19e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 376 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREqgs 455
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 456 ikckLEEDLQEATKLLEDKREQLKKSKEHEKLMEgELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSL 535
Cdd:TIGR02168 756 ----LTELEAEIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 536 NKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA-LQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSET 614
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELeELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 615 KSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKlrgfHQESELEVHAFDKKLEEMSCQVLQWQ-KQHQNDLKM--- 690
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----EYSLTLEEAEALENKIEDDEEEARRRlKRLENKIKElgp 986
|
330 340
....*....|....*....|....*...
gi 237858621 691 --LAAKEE--QLREFQEEMAALKENLLE 714
Cdd:TIGR02168 987 vnLAAIEEyeELKERYDFLTAQKEDLTE 1014
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
158-718 |
2.62e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 2.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 158 DIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSahierkdkditilqcRL 237
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK---------------EL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 238 QELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLkkekelekqqcmatELEMTVKEAKQDKSKEAECKALQ 317
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE--------------ELEEKVKELKELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 318 AEVQKLKNSLEEAKQQERLAAQQAAQCKEEAAlagcHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQK-ESSMAEKE 396
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLEELEERHELYEEaKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 397 QTsnRKRVEELSLElsEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIK--------CKLEEDLQEAT 468
Cdd:PRK03918 376 RL--KKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvCGRELTEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 469 KLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSR-----KLEEENENLRAELQCCSTQ-LESSLNKYNTSQ 542
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkELAEQLKELEEKLKKYNLEeLEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 543 QVIQDLNKEIALQKESLMSLQAQLDK--ALQKEKHYLQTTItKEAYDALSRKSAACQDDLT---QALEKLNHVTSETKSL 617
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEEL-AELLKELEELGFESVEELEerlKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 618 QQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGfhQESELEVHAFDKKLEEMSCQVLQWQKQhqndLKMLAAKEEQ 697
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRE----LAGLRAELEE 684
|
570 580
....*....|....*....|.
gi 237858621 698 LREFQEEMAALKENLLEDDKE 718
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEE 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
325-651 |
5.41e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 5.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 325 NSLEEAKQQERLAAQQAAQCKEEAALAgchleDTQRKLQKGLlldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRV 404
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQ-----SELRRIENRL---DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 405 EELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMN----------------------DMLDRIKHQHREQGSIKCKLEE 462
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHkleealndlearlshsripeiqAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 463 DLQEatklLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstQLESSL------- 535
Cdd:TIGR02169 820 KLNR----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR----DLESRLgdlkker 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 536 ----NKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAY---DALSRKSAACQDDLTQALEKLN 608
Cdd:TIGR02169 892 deleAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 237858621 609 HVT----SETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRK 651
Cdd:TIGR02169 972 PVNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
91-718 |
1.76e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 91 QETQKRLSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAlIKLQAdfasctathryppsSSEECEDIKKIL-----KH 165
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQL---KSLERQAEKA-ERYKE--------------LKAELRELELALlvlrlEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 166 LQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREE---TSAHIERKDKDITILQCRLQELQL 242
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 243 EFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNsllkkekelekqQCMATELEMTVKEAKQDKSKEAEcKALQAEVQK 322
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKE------------ELESLEAELEELEAELEELESRL-EELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 323 LKNSLEEAKQQERLAAQQAAQCKEEAAlagcHLEDTQRKLQ--KGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSN 400
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLE----RLEDRRERLQqeIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 401 RKRVEELSLELSEALRKLensDKEKRQLQKTVAEQDMkMNDMLDRIkhqhreqgsikckleEDLQEATKLLEDKREQLkk 480
Cdd:TIGR02168 460 EEALEELREELEEAEQAL---DAAERELAQLQARLDS-LERLQENL---------------EGFSEGVKALLKNQSGL-- 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 481 SKEHEKLmeGELEALRQEFKK-KDKTLKENSRKLEEENENlrAELQCCSTQLESSLNKYN------TSQQVIQDLNKEIA 553
Cdd:TIGR02168 519 SGILGVL--SELISVDEGYEAaIEAALGGRLQAVVVENLN--AAKKAIAFLKQNELGRVTflpldsIKGTEIQGNDREIL 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 554 LQKESLMSLQAQLDK--------------------------ALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQAleKL 607
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKfdpklrkalsyllggvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNS--SI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 608 NHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQND 687
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
650 660 670
....*....|....*....|....*....|.
gi 237858621 688 LKMLAAKEEQLREFQEEMAALKENLLEDDKE 718
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
345-715 |
3.36e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 3.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 345 KEEAALagcHLEDTQRKLQKgllLDkqkaDTIQELQRELQMLQKESSMAEKEQTsnrKRVEELSLELSEALRKLENSDKE 424
Cdd:COG1196 174 KEEAER---KLEATEENLER---LE----DILGELERQLEPLERQAEKAERYRE---LKEELKELEAELLLLKLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 425 KRQLQKTVAEQDMKmndmLDRIKHQHREqgsikckLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDK 504
Cdd:COG1196 241 LEELEAELEELEAE----LEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 505 TLKENSRKLEEENENLRAElqccstqlesslnkyntsQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHylqttiTKE 584
Cdd:COG1196 310 RRRELEERLEELEEELAEL------------------EEELEELEEELEELEEELEEAEEELEEAEAELAE------AEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 585 AYDALSRKSAACQDDLTQALEKLNhvtsetkSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVH 664
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELL-------EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 237858621 665 AFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLED 715
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
163-718 |
4.65e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 4.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 163 LKHLQEQKDSQclhvEEYQNLVKDLRV--------ELEAVSEQKRNIMKDMMKLELDLHGLREETS---AHIERKDKDIT 231
Cdd:COG1196 202 LEPLERQAEKA----ERYRELKEELKEleaellllKLRELEAELEELEAELEELEAELEELEAELAeleAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 232 ILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEA 311
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 312 ECKALQAEVQKLKNSLEEAKQQERLAAQQA-AQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKES 390
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEElLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 391 SMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ-----HREQGSIKCKLEEDLQ 465
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLleaeaDYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 466 EATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVI 545
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 546 QDLNKEIALQKESLMSLQAQLDKALqkekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQ 625
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTL------LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 626 EKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEM 705
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEAL--LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570
....*....|...
gi 237858621 706 AALKENLLEDDKE 718
Cdd:COG1196 750 EEALEELPEPPDL 762
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
258-613 |
1.10e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 258 LQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKskeaecKALQAEVQKLKNSLEEAKQQERLA 337
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL------EELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 338 AQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRK 417
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 418 LENSDKEKRQLQKTV---AEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEA 494
Cdd:TIGR02168 826 LESLERRIAATERRLedlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 495 LRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQ----DLNKEIALQKESLMSLQAQLDK-- 568
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEalenKIEDDEEEARRRLKRLENKIKElg 985
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 237858621 569 -----ALQKEKHYlqttitKEAYDALSRKsaacQDDLTQALEKLNHVTSE 613
Cdd:TIGR02168 986 pvnlaAIEEYEEL------KERYDFLTAQ----KEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
376-709 |
1.46e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 376 IQELQRELQMLQKESSMAEKEQTSNRKRVEelsLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 455
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 456 IKCKLEEDLQEATKLLEDKREQLKKskeheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSL 535
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKE----------KIGELEAEIASLERSIAEKERELEDAEERLA--------KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 536 NKYntsQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTItkeayDALSRKSAACQDDLTQALEKLNHVTSETK 615
Cdd:TIGR02169 332 DKL---LAEIEELEREIEEERKRRDKLTEEY-AELKEELEDLRAEL-----EEVDKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 616 SLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKE 695
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
330
....*....|....
gi 237858621 696 EQLREFQEEMAALK 709
Cdd:TIGR02169 483 KELSKLQRELAEAE 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-715 |
1.46e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 6 ENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLEcQVKMLQGELGGIMGQEPENKGDHSKVRIYTspc 85
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLVLRLEELREELEELQEELKE--- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 86 MIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALV---------LEREKALIK-----LQADFASCTATHRYPPS 151
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalaneisrLEQQKQILRerlanLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 152 SSEECED----IKKILKHLQEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIE 224
Cdd:TIGR02168 331 KLDELAEelaeLEEKLEELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 225 RKDKDITILQCRLQELQLEFTETQKLTLKKDkfLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQcmaTELEMTVKEAK 304
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAE---QALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 305 QDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKE------------EAALAGcHLE--------------DT 358
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSElisvdegyeaaiEAALGG-RLQavvvenlnaakkaiAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 359 QRKLQKG----LLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEEL----------SLELSEALRKLENSDKE 424
Cdd:TIGR02168 565 LKQNELGrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 425 KR--QLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALR---QEF 499
Cdd:TIGR02168 645 YRivTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkelEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 500 KKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQkekhylQT 579
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE------EL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 580 TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLrgfhqES 659
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL-----ES 873
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237858621 660 ELEVH-------------------AFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLED 715
Cdd:TIGR02168 874 ELEALlnerasleealallrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-673 |
6.18e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 6.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 184 VKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREetsaHIERKDKDITILQCRLQELQlEFTETQKLTLKKDKFLQEKDE 263
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEE----RIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLD 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 264 MLQELEKKLTQVQNsllkkekelekqqcMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEE-AKQQERLAAQQAA 342
Cdd:PRK03918 308 ELREIEKRLSRLEE--------------EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 343 QCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEK--------------------------- 395
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieelkkakgkcpvcgrelteehrkel 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 396 --EQTSNRKRVEELSLELSEALRKLEnsdKEKRQLQKTVAEQD--MKMNDMLDRIKHQHREQGSIKC-KLEEDLQEATKL 470
Cdd:PRK03918 454 leEYTAELKRIEKELKEIEEKERKLR---KELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLeELEKKAEEYEKL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 471 ------LEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTsqqv 544
Cdd:PRK03918 531 keklikLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE---- 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 545 IQDLNKEIALQKESLMSLQAQLDKALQKekhylqTTITKEAYDALSRKSAACQDDLTQalEKLNHVTSETKSLQQSLTQT 624
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEE------LAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGL 678
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 237858621 625 QEKKAQLEEEIIAYEERMKKLNTELRKLRgfhqESELEVHAFDKKLEEM 673
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEERE----KAKKELEKLEKALERV 723
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-536 |
7.41e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 7.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 218 ETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELE 297
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 298 MTVKEAKQDKSKEAEckALQAEVQKLKNSLEEAKQQERLAAQQAAQCKE-EAALAGCH--LEDTQRKLQKGLLLDKQKAD 374
Cdd:TIGR02168 754 KELTELEAEIEELEE--RLEEAEEELAEAEAEIEELEAQIEQLKEELKAlREALDELRaeLTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 375 TIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqg 454
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR------- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 455 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESS 534
Cdd:TIGR02168 905 ----ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
..
gi 237858621 535 LN 536
Cdd:TIGR02168 981 IK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
177-524 |
1.79e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 177 VEEYQNLVKDLRVELEAVSEQ--KRNIMKDMMKLELDlhGLREETSAHIERKDkditiLQCRLQELqlEFTETQKLTLKK 254
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENieRLDLIIDEKRQQLE--RLRREREKAERYQA-----LLKEKREY--EGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 255 DKFLQEKDEMLQELEKKLTQVQnsllkKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQE 334
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLT-----EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 335 RLAAQQaaqckeeaalagchLEDTQRKLQKG-LLLDKQKAD------TIQELQRELQMLQKESSMAEKEQTSNRKRVEEL 407
Cdd:TIGR02169 311 AEKERE--------------LEDAEERLAKLeAEIDKLLAEieelerEIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 408 SLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKL---LEDKREQLKKSkeh 484
Cdd:TIGR02169 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELeeeKEDKALEIKKQ--- 453
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 237858621 485 eklmEGELEALRQEFKKKDKT---LKENSRKLEEENENLRAEL 524
Cdd:TIGR02169 454 ----EWKLEQLAADLSKYEQElydLKEEYDRVEKELSKLQREL 492
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-557 |
1.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 303 AKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQaaqckeeaalagchLEDTQRKLqkgllldKQKADTIQELQRE 382
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ--------------LAALERRI-------AALARRIRALEQE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 383 LQMLQKESSMAEKEQTSNRKRVEELSLELSEALR---KLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGsikck 459
Cdd:COG4942 78 LAALEAELAELEKEIAELRAELEAQKEELAELLRalyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 460 leEDLQEATKLLEDKREQLKKSKEheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYN 539
Cdd:COG4942 153 --EELRADLAELAALRAELEAERA-------ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250
....*....|....*...
gi 237858621 540 TSQQVIQDLNKEIALQKE 557
Cdd:COG4942 224 ELEALIARLEAEAAAAAE 241
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
89-655 |
1.64e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.70 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 89 EHQETQKRLSEVWQKVSQQDDLIQELRNKL------------ACSNALVLEREKALIKLQADFASCTATHRYPPSSSEEC 156
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELngelsaadaavaKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 157 EDIKKILKHLQE-QKDSQclhvEEYQnlvkdlRVELEAVSEQKRnimkdmmklelDLHGLREETSAHIERKDKDITILQC 235
Cdd:pfam12128 357 ENLEERLKALTGkHQDVT----AKYN------RRRSKIKEQNNR-----------DIAGIKDKLAKIREARDRQLAVAED 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 236 RLQELQ-----------LEFTETQ---KLTLKKDKFLQekDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVK 301
Cdd:pfam12128 416 DLQALEselreqleagkLEFNEEEyrlKSRLGELKLRL--NQATATPELLLQLENFDERIERAREEQEAANAEVERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 302 EAKQDKSKEAECKALQ---AEVQKLKNSLEEAKQQ-----------------------ERLAAQQ------------AAQ 343
Cdd:pfam12128 494 LRQARKRRDQASEALRqasRRLEERQSALDELELQlfpqagtllhflrkeapdweqsiGKVISPEllhrtdldpevwDGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 344 CKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDK 423
Cdd:pfam12128 574 VGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARL 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 424 EKRQLQKTVAEQDMKMNDMLDRIKHQHREQ-GSIKCKLEEDLQEATKLLEDKREQLkksKEHEKLMEGELEALRQEFKKK 502
Cdd:pfam12128 654 DLRRLFDEKQSEKDKKNKALAERKDSANERlNSLEAQLKQLDKKHQAWLEEQKEQK---REARTEKQAYWQVVEGALDAQ 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 503 DKTLKEnsrKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQT-TI 581
Cdd:pfam12128 731 LALLKA---AIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETwLQ 807
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237858621 582 TKEAYDALSRKSAACQDDLTQALEKLnhvTSETKSlqqsltqtqeKKAQLEEEIIAYEERMKKLNTELRKLRGF 655
Cdd:pfam12128 808 RRPRLATQLSNIERAISELQQQLARL---IADTKL----------RRAKLEMERKASEKQQVRLSENLRGLRCE 868
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
492-718 |
3.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 492 LEALRQEFKKKDKTLKENSRKLEEENEnLRAELQccSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA-L 570
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRE-LKEELK--ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELeA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 571 QKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELR 650
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 237858621 651 KLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 718
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
300-718 |
1.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 300 VKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQEL 379
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 380 QRELQMLQKESSMAEKEQTSNRKrveelslelSEALRKLENSDKEKRQLQKTVAEQdmKMNDMLDRIKHQHREQGSIKCK 459
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKK---------ADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 460 LEE--DLQEATKLLEDKR--EQLKKSKEHEKLMEgELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSL 535
Cdd:PTZ00121 1453 AEEakKAEEAKKKAEEAKkaDEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 536 NKYNTsqqviQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETK 615
Cdd:PTZ00121 1532 EAKKA-----DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 616 SLQQSLTQTQEKKAQLEEEIIAYEERMKklnteLRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKmlaaKE 695
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKK-----VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KA 1677
|
410 420
....*....|....*....|...
gi 237858621 696 EQLREFQEEMAALKENLLEDDKE 718
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEE 1700
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-718 |
1.36e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 357 DTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLEN---SDKEKRQLQKTVA 433
Cdd:COG4913 593 DDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEyswDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 434 EQDmkmnDMLDRIkhqhrEQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEfkkkdktLKENSRK 512
Cdd:COG4913 672 ELE----AELERL-----DASSDDLAaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-------LDELQDR 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 513 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhYlqttitKEAYDALSRK 592
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA---F------NREWPAETAD 806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 593 SAACQDDLTQALEKLNHVTSE-----TKSLQQSLTQTQEKK-----AQLEEEIIAYEERMKKLNTELRKLRgFHQESELE 662
Cdd:COG4913 807 LDADLESLPEYLALLDRLEEDglpeyEERFKELLNENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP-FGPGRYLR 885
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 237858621 663 VHAFDKKLEEmscqVLQ-WQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 718
Cdd:COG4913 886 LEARPRPDPE----VREfRQELRAVTSGASLFDEELSEARFAALKRLIERLRSEEEE 938
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
87-574 |
2.41e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 87 IQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHL 166
Cdd:PRK03918 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 167 QEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQ-L 242
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEeA 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 243 EFTETQKLTLKKDKFLQEKDE---MLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAE 319
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 320 VQKLKNSLEEAKQQERLAAQ-QAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQT 398
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKElKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 399 SNrkrVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLE------ 472
Cdd:PRK03918 528 EK---LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyney 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 473 ----DKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLE--------EENENLRAELqccsTQLESSLNKYNT 540
Cdd:PRK03918 605 lelkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkyseEEYEELREEY----LELSRELAGLRA 680
|
490 500 510
....*....|....*....|....*....|....
gi 237858621 541 SQQVIQDLNKEIalqKESLMSLQAQLDKALQKEK 574
Cdd:PRK03918 681 ELEELEKRREEI---KKTLEKLKEELEEREKAKK 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
188-632 |
2.74e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 188 RVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERK----DKD----ITILQCRlQELQLEFTETQKLtlkkDKFLQ 259
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwDRDtgnsITIDHLR-RELDDRNMEVQRL----EALLK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 260 E-KDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEakqQERLAA 338
Cdd:pfam15921 437 AmKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE---KERAIE 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 339 QQAAQCKEEAALAGCHLEDTQRKlqkgllldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKL 418
Cdd:pfam15921 514 ATNAEITKLRSRVDLKLQELQHL--------KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTA 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 419 ENSDKEKRQLQKTVAEQDMKMND---MLDRIKHQHREQGSIKCKLE----------EDLQEATKLLEDKREQL----KKS 481
Cdd:pfam15921 586 GAMQVEKAQLEKEINDRRLELQEfkiLKDKKDAKIRELEARVSDLElekvklvnagSERLRAVKDIKQERDQLlnevKTS 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 482 KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMS 561
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDA 745
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237858621 562 LQAQ---LDKAL---QKEKHYLQttitkeaydalSRKSAACQDDLTQALEKlNHVTSETKSLQQSLTQTQEKKAQLE 632
Cdd:pfam15921 746 LQSKiqfLEEAMtnaNKEKHFLK-----------EEKNKLSQELSTVATEK-NKMAGELEVLRSQERRLKEKVANME 810
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
178-710 |
5.15e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 178 EEYQNLVKDLRVELEAVSEQKRNIMKDMM-----KLELDLH----GLRE---ETSAHIERKDKDITILQCRLQELQLEFT 245
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQLKaqieeKEEKDLHerlnGLESelaELDEEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 246 ETQkltlKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEM----TVKEAKQDKSKEAECKALQAEVQ 321
Cdd:PRK02224 245 EHE----ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEerddLLAEAGLDDADAEAVEARREELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 322 KLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQkgllldkQKADT----IQELQRELQMLQKESSMAEKEQ 397
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR-------EEAAEleseLEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 398 TSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKC-KLEEDLQEATKL--LEDK 474
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCpECGQPVEGSPHVetIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 475 REQLkkskeheklmeGELEALRQEFKKKDKTLKENSRKLEeenenlraELQCCSTQLESSLNKYNTSQQVIQDLNKEIAL 554
Cdd:PRK02224 474 RERV-----------EELEAELEDLEEEVEEVEERLERAE--------DLVEAEDRIERLEERREDLEELIAERRETIEE 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 555 QKESLMSLQAQLDK--ALQKEKHYLQTTITKEAYDALSRkSAACQDDLT------QALEKLNHVTSETKSLQQSLTQTQE 626
Cdd:PRK02224 535 KRERAEELRERAAEleAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAelkeriESLERIRTLLAAIADAEDEIERLRE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 627 KKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKK-----LEEMSCQVLQWQKQH---QNDLKMLAAKEEQL 698
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyLEQVEEKLDELREERddlQAEIGAVENELEEL 693
|
570
....*....|..
gi 237858621 699 REFQEEMAALKE 710
Cdd:PRK02224 694 EELRERREALEN 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
373-607 |
8.47e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 8.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 373 ADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHRE 452
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 453 QGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQeFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 532
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 533 SSLNKYntsQQVIQDLNKEIALQKESLMSLQAQLDK------ALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEK 606
Cdd:COG4942 178 ALLAEL---EEERAALEALKAERQKLLARLEKELAElaaelaELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
.
gi 237858621 607 L 607
Cdd:COG4942 255 L 255
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
246-673 |
1.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 246 ETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMT---VKEAKQDKSKEAECKALQAEVQK 322
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadeLKKAAAAKKKADEAKKKAEEKKK 1432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 323 ---LKNSLEEAKQqerlaAQQAAQCKEEAALAgchlEDTQRKLQkglllDKQKADTIQ---ELQRELQMLQKESSMAEKE 396
Cdd:PTZ00121 1433 adeAKKKAEEAKK-----ADEAKKKAEEAKKA----EEAKKKAE-----EAKKADEAKkkaEEAKKADEAKKKAEEAKKK 1498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 397 QTSNRKRVEElsLELSEALRKLENSDK--EKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDK 474
Cdd:PTZ00121 1499 ADEAKKAAEA--KKKADEAKKAEEAKKadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 475 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKleEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIAL 554
Cdd:PTZ00121 1577 NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 555 QKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEE 634
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
410 420 430
....*....|....*....|....*....|....*....
gi 237858621 635 IIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEM 673
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
10-652 |
2.12e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 10 EKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLECQVKMLQGELGGIMGQEPEnkgdhskvriytspcMIQE 89
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR---------------LEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 90 HQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQadfasctathryppsssEECEDIKKILKHLQEQ 169
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE-----------------EELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 170 KDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQK 249
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 250 LTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEE 329
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 330 AKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSL 409
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 410 ELSEALRKLensdkekRQLQKTVAEQDmkmndmldRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLME 489
Cdd:COG1196 607 DLREADARY-------YVLGDTLLGRT--------LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 490 GELEALRQEFKKKDKTLKENSRKLEEENENLRAElqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA 569
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEE------ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 570 LQKEKHYLQTTITKEAYDALSRKsaacQDDLTQALEKLNHV----TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKL 645
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERE----LERLEREIEALGPVnllaIEEYEELEERYDFLSEQREDLEEARETLEEAIEEI 821
|
....*..
gi 237858621 646 NTELRKL 652
Cdd:COG1196 822 DRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
163-652 |
4.67e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 163 LKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLRE---ETSAHIERKDKDITILQCRLQE 239
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 240 LQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAeckalQAE 319
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA-----EEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 320 VQKLKNSLEEAKQQERLAAQQAAQCKEEAALagchlEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTS 399
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERL-----EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 400 NRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS------------------------ 455
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavligveaayeaaleaa 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 456 -------IKCKLEEDLQEATKLLEDKR---------EQLKKSKEHEK------------LMEGELEALRQEFKKKDKTLK 507
Cdd:COG1196 544 laaalqnIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAalargaigaavdLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 508 ENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYD 587
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 237858621 588 ALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAY-----------EERMKKLNTELRKL 652
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEelpeppdleelERELERLEREIEAL 779
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
157-712 |
5.65e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 157 EDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAvSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCR 236
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE-SRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 237 LQELQLEFTETQKLTLKKDKFLQEKDEMLQElekKLTQVQNSLLKKEKELEKQQCMATELEMTvkEAKQDKSKEAECKAL 316
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTICQLTEEKEAQME---ELNKAKAAHSFVVTEFEATTCSLEELLRT--EQQRLEKNEDQLKII 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 317 QAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAAlAGCHLEDTQRKLQKgllLDKQKADTIQELQRELQMLQKESSMAEKE 396
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKKILA-EDEKLLDEKKQFEK---IAEELKGKEQELIFLLQAREKEIHDLEIQ 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 397 QTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKLEEDLQEATKLLEDKRE 476
Cdd:pfam05483 459 LTAIKTSEEHYLKEVEDLKTELEK---EKLKNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQEERMLK 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 477 QLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI-ALQ 555
Cdd:pfam05483 535 QIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIeELH 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 556 KEslmslqaqlDKALQKekhylQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI 635
Cdd:pfam05483 615 QE---------NKALKK-----KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKA 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 636 IAYEERMKKLNTELrKLRGFHQESEL------EVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALK 709
Cdd:pfam05483 681 KAIADEAVKLQKEI-DKRCQHKIAEMvalmekHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
...
gi 237858621 710 ENL 712
Cdd:pfam05483 760 KQL 762
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
309-504 |
6.60e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 309 KEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCK-------EEAALAGCH-----LEDTQRKLQKGLLLDKQKADTI 376
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeyswDEIDVASAEreiaeLEAELERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 377 QELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQdmkmndMLDRIKHQHREQgsi 456
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE------RFAAALGDAVER--- 765
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 237858621 457 kcKLEEDLQEATKLLEDKREQLkkskeheklmEGELEALRQEFKKKDK 504
Cdd:COG4913 766 --ELRENLEERIDALRARLNRA----------EEELERAMRAFNREWP 801
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
251-536 |
8.23e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.69 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 251 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEkqqCMATELEMTVKEAKQDKSKeaeckalqAEVQKLKNSLEEA 330
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFS---LKAEVLIQKFGRSLKAKKR--------FSLLKKETIYLQS 873
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 331 KQQERLAAQQAAQCKEEAALAGcHLEDTQRKLQKGLLLDKQKADTiqELQRELQMLQKESSMAEK--------EQTSNRK 402
Cdd:COG5022 874 AQRVELAERQLQELKIDVKSIS-SLKLVNLELESEIIELKKSLSS--DLIENLEFKTELIARLKKllnnidleEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 403 RVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLeEDLQEATKLLEDKREQLKKSK 482
Cdd:COG5022 951 VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQY-GALQESTKQLKELPVEVAELQ 1029
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 237858621 483 EHEKLMEGELEALRQEfkkkdKTLKENSRKLEEENENLRAELQCCSTQLESSLN 536
Cdd:COG5022 1030 SASKIISSESTELSIL-----KPLQKLKGLLLLENNQLQARYKALKLRRENSLL 1078
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
260-590 |
1.25e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 260 EKDEMLQELEKKLTQVQNSLLKKEKELEKQQcMATELEMTVKEAKQDKSKEAECKALQAEVQKLknslEEAKQQERLAAQ 339
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAKKAEEAKKADEAKKA----EEKKKADELKKA 1554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 340 QAAQCKEEAALAgchleDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLE 419
Cdd:PTZ00121 1555 EELKKAEEKKKA-----EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 420 NSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEED---LQEATKLLEDKR---EQLKKSKEHEKLMEgELE 493
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkAEEAKKAEEDEKkaaEALKKEAEEAKKAE-ELK 1708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 494 ALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKE 573
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
330
....*....|....*..
gi 237858621 574 KHYLQTTITKEAYDALS 590
Cdd:PTZ00121 1789 DEKRRMEVDKKIKDIFD 1805
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-718 |
1.38e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 475 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAelqcCSTQLESSLNKYNTSQQVIQDLNKEIAL 554
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 555 QKESLMSLQAQLDKaLQKEKHYLQTTITK--EAYDALSRKSAACQ-DDLTQALEKLNHVTSE----TKSLQQSLTQTQEK 627
Cdd:TIGR02169 749 LEQEIENVKSELKE-LEARIEELEEDLHKleEALNDLEARLSHSRiPEIQAELSKLEEEVSRiearLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 628 KAQLEEEI--------------IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQH---QNDLKM 690
Cdd:TIGR02169 828 KEYLEKEIqelqeqridlkeqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLrelERKIEE 907
|
250 260
....*....|....*....|....*...
gi 237858621 691 LAAKEEQLREFQEEMAALKENLLEDDKE 718
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
410-651 |
1.63e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 410 ELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqgsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLME 489
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 490 GELEALRQEFKKKDKTLKENSRKLEEENENLRAEL---QCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQL 566
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 567 DKALQKEKHYLQTtiTKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLN 646
Cdd:COG4942 170 EAERAELEALLAE--LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 237858621 647 TELRK 651
Cdd:COG4942 248 FAALK 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-723 |
1.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 154 EECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITIL 233
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 234 QCRLQEL-----QLEFTETQKLTLKKDKflQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKS 308
Cdd:TIGR02169 416 QRLSEELadlnaAIAGIEAKINELEEEK--EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 309 K-EAECKALQAE------VQKLKNS-----------LEEAKQQERLAAQQAAQ-------CKEEAALAGC---------- 353
Cdd:TIGR02169 494 EaEAQARASEERvrggraVEEVLKAsiqgvhgtvaqLGSVGERYATAIEVAAGnrlnnvvVEDDAVAKEAiellkrrkag 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 354 --------HLEDTQRKLQKGLL------------LDKQKA--------DTI----QELQREL-----------QMLQKES 390
Cdd:TIGR02169 574 ratflplnKMRDERRDLSILSEdgvigfavdlveFDPKYEpafkyvfgDTLvvedIEAARRLmgkyrmvtlegELFEKSG 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 391 SM-----AEKEQTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQ 465
Cdd:TIGR02169 654 AMtggsrAPRGGILFSRSEPAELQRLRERLEGLKR---ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 466 EATKLledkREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKEnsrkLEEENENLRAELQccstQLESSLN--KYNTSQQ 543
Cdd:TIGR02169 731 EEEKL----KERLEELEEDLSSLEQEIENVKSELKELEARIEE----LEEDLHKLEEALN----DLEARLShsRIPEIQA 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 544 VIQDLNKEIALQKESLMSLQAQLDKaLQKEKHYLqttitkeaydalsrksaacQDDLTQALEKLNHVTSETKSLQQSLTQ 623
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYL-------------------EKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 624 TQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQwQKQHQNDLKmlaakeEQLREFQE 703
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-KRKRLSELK------AKLEALEE 931
|
650 660
....*....|....*....|
gi 237858621 704 EMAALKENLLEDDKEPCCLP 723
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIPEEEL 951
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
374-717 |
2.23e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 374 DTIQELQRELQmlQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQ---KTVAEQDMKMNDMLDRikhQH 450
Cdd:pfam15921 245 DQLEALKSESQ--NKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqlEIIQEQARNQNSMYMR---QL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 451 REQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQ 530
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 531 LESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLdkalqkekhylqTTITKEAYDALSRKSAACQDDlTQALEKLNHV 610
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL------------KAMKSECQGQMERQMAAIQGK-NESLEKVSSL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 611 TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELrklrgfhQESELEVHAFDKKLEEMSCQV-LQWQkqhqnDLK 689
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL-------QEKERAIEATNAEITKLRSRVdLKLQ-----ELQ 534
|
330 340
....*....|....*....|....*...
gi 237858621 690 MLAAKEEQLREFQEEMAALKENLLEDDK 717
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
366-569 |
2.28e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 366 LLLDKQKADTIQELQrELQMLQKESsMAEKEQTSNRKRVEELSLELSEALRKLEN------------SDKEKRQLQKTVA 433
Cdd:PRK05771 12 VTLKSYKDEVLEALH-ELGVVHIED-LKEELSNERLRKLRSLLTKLSEALDKLRSylpklnplreekKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 434 EQDMKMNDMLDRIKHQHREQGSIKCK---LEEDLQEATKL----LEDKREQLKKS------------------------- 481
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEikeLEQEIERLEPWgnfdLDLSLLLGFKYvsvfvgtvpedkleelklesdvenv 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 482 -----------------KEHEKLMEGELEALrqEFKKKD----KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNT 540
Cdd:PRK05771 170 eyistdkgyvyvvvvvlKELSDEVEEELKKL--GFERLEleeeGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|....*....
gi 237858621 541 SQQVIQDLNkEIALQKESLMSLQAQLDKA 569
Cdd:PRK05771 248 ELLALYEYL-EIELERAEALSKFLKTDKT 275
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
374-595 |
3.17e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 374 DTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHR-- 451
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARal 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 452 -EQGSIKCKLE-----EDLQEATklleDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQ 525
Cdd:COG3883 96 yRSGGSVSYLDvllgsESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 526 ccstQLESSLNKYntsQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAA 595
Cdd:COG3883 172 ----ELEAQQAEQ---EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
238-704 |
3.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 238 QELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELE------MTVKEAKQDKSKEA 311
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEelreelEKLEKLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 312 ECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAAlagcHLEDTQRKLQKGL-LLDKQKADTIQELQRELQMLQKES 390
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLeQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 391 SMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQK-----------TVAEQDMKMNDMLDRIKHQHREQGSIKCK 459
Cdd:COG4717 209 AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 460 LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSLNKYN 539
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ--------ELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 540 TSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhylqttitKEAYDALSRKSAACQDDLTQALEKLNHV--TSETKSL 617
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVEDEEELRAALEQ----------AEEYQELKEELEELEEQLEELLGELEELleALDEEEL 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 618 QQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEvHAFDKKLEEMSCQVLQWQKqhqndLKMLAAKEEQ 697
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAA-----LKLALELLEE 504
|
....*..
gi 237858621 698 LREFQEE 704
Cdd:COG4717 505 AREEYRE 511
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
310-572 |
3.61e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 310 EAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAgchledtqRKL--QKGLLLDKQKADTIQELQRELQMLQ 387
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLL--------NKLlpQANLLADETLADRLEELREELDAAQ 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 388 KessmAEKEQTSNRKRVEELSLELS------EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKH--------QHREQ 453
Cdd:COG3096 907 E----AQAFIQQHGKALAQLEPLVAvlqsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHfsyedavgLLGEN 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 454 GSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLES 533
Cdd:COG3096 983 SDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRD 1062
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 237858621 534 SL-NKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQK 572
Cdd:COG3096 1063 ELhEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERD 1102
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
366-524 |
3.86e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 366 LLLDKQKADT-IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA---LRKLENSDKEKRQLQKTVAEQDMK--- 438
Cdd:COG1579 8 ALLDLQELDSeLDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLekeIKRLELEIEEVEARIKKYEEQLGNvrn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 439 ---MNDMLDRIKHQHREQGsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEE 515
Cdd:COG1579 88 nkeYEALQKEIESLKRRIS----DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*....
gi 237858621 516 ENENLRAEL 524
Cdd:COG1579 164 EREELAAKI 172
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
370-709 |
4.27e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 370 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQL---QKTVAEQDMKMNDMLDRI 446
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELeneLNLLEKEKLNIQKNIDKI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 447 KHQHREQGSIKCKLEEDLQEATKL------LEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENL 520
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLesqiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 521 RAELQCCSTQLESSLNKYNTSQQVIQDLNKEiaLQKESLMSLQAQLDKaLQKEKHYLQTTITKEaydalSRKSAACQDDL 600
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKN-QEKKLEEIQNQISQN-----NKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 601 TQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 680
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
330 340
....*....|....*....|....*....
gi 237858621 681 QKQHQNDLKMLAAKEEQLREFQEEMAALK 709
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-553 |
5.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 355 LEDTQRKLQkgLLLD-KQKADTIQELQRELQMLQKESSMAEKEQtsNRKRVEELSLELSEALRKLENSDKEKRQLQKTVA 433
Cdd:COG4913 244 LEDAREQIE--LLEPiRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 434 EQDmkmnDMLDRIKHQHREQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFkkkdktlKENSRK 512
Cdd:COG4913 320 ALR----EELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEF-------AALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 237858621 513 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIA 553
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
490-714 |
5.72e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.61 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 490 GELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstQLEsslnkYNTSQqvIQDLNkEIALQKESLMSLQAQLDKA 569
Cdd:COG0497 151 AGLEELLEEYREAYRAWRALKKELEELRADEAERAR----ELD-----LLRFQ--LEELE-AAALQPGEEEELEEERRRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 570 LQKEKhyLQTTITkEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE---EIIAY-------- 638
Cdd:COG0497 219 SNAEK--LREALQ-EALEALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLESALIELEEaasELRRYldslefdp 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 639 ------EERMKKLNTELRKlrgfHQESelevhafdkkLEEmscqVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENL 712
Cdd:COG0497 296 erleevEERLALLRRLARK----YGVT----------VEE----LLAYAEELRAELAELENSDERLEELEAELAEAEAEL 357
|
..
gi 237858621 713 LE 714
Cdd:COG0497 358 LE 359
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
360-635 |
6.76e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 6.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 360 RKLQKGLL-------LDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTV 432
Cdd:PHA02562 153 RKLVEDLLdisvlseMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 433 AEQDMKMNDMLDRIKHQhreqgsikcklEEDLQEATKLLEDKREQLKK-----SKEHEKLME-GELEALRQEFKKKDKTL 506
Cdd:PHA02562 233 KAEIEELTDELLNLVMD-----------IEDPSAALNKLNTAAAKIKSkieqfQKVIKMYEKgGVCPTCTQQISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 507 KENSRKLEEENENLRaELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLdKALQKEkhylqttitkeay 586
Cdd:PHA02562 302 TKIKDKLKELQHSLE-KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA-KKVKAA------------- 366
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 237858621 587 daLSRKSAACQDDltqaleklnhvTSETKSLQQSLTQTQEKKAQLEEEI 635
Cdd:PHA02562 367 --IEELQAEFVDN-----------AEELAKLQDELDKIVKTKSELVKEK 402
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
315-498 |
6.99e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 315 ALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEaalagchLEDTQRKLQKgllldkQKADTIQELQRELQMLQKEssmae 394
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREE-------LDELEAQIRG------NGGDRLEQLEREIERLERE----- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 395 keqtsnRKRVEELSLELSEALRKLE----NSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEatkl 470
Cdd:COG4913 354 ------LEERERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE---- 423
|
170 180
....*....|....*....|....*...
gi 237858621 471 LEDKREQLKKSKeheKLMEGELEALRQE 498
Cdd:COG4913 424 LEAEIASLERRK---SNIPARLLALRDA 448
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
489-707 |
7.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 489 EGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQ--- 565
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLK-----------QLAALERRIAALARRIRALEQELAALEAELAELEKEiae 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 566 LDKALQKEKHYLQTTItKEAYDALSRKSAAC---QDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERM 642
Cdd:COG4942 95 LRAELEAQKEELAELL-RALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237858621 643 KKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQvlqwQKQHQNDLKMLAAKEEQLREFQEEMAA 707
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKE----LAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
97-718 |
8.43e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 97 LSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAL--IKLQADFASCTATHRyppssSEECEDIKKILKHLQEQKDSQC 174
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL---ERLRREREKAEryQALLKEKREYEGYEL-----LKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 175 LHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKL----ELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKL 250
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 251 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaECKALQAEVQKLKNSLEEA 330
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD------ELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 331 KQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLE 410
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 411 LSEALRKLENSDKEKRQLQKTVAE---QDMKMNDMLDRIKHQHREQGSIKCKL-------------------EEDLQEAT 468
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvvedDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 469 KLLEDKR--------------EQLKKSKEHEK---------------------------LMEGELEALRQEFKK------ 501
Cdd:TIGR02169 565 ELLKRRKagratflplnkmrdERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtLVVEDIEAARRLMGKyrmvtl 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 502 ----------------KDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQ 565
Cdd:TIGR02169 645 egelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 566 LDKALQKEKhylqttitkeaydalsrksaacqddltQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE----- 640
Cdd:TIGR02169 725 IEQLEQEEE---------------------------KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkl 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 641 --------------RMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMA 706
Cdd:TIGR02169 778 eealndlearlshsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
730
....*....|..
gi 237858621 707 ALKENLLEDDKE 718
Cdd:TIGR02169 858 NLNGKKEELEEE 869
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
467-653 |
8.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 467 ATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKEnsrkLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQ 546
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA----LERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 547 DLNKEIALQKESLmslqAQLDKALQKEKHY------------LQTTITKEAYDALSRKSAACQDDLTQALEKLNHV---- 610
Cdd:COG4942 94 ELRAELEAQKEEL----AELLRALYRLGRQpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALrael 169
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 237858621 611 TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 653
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA 212
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
413-674 |
9.33e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 413 EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCkLEEDLQEATKLLEDKRE-----------QLKKS 481
Cdd:PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI-LEEQLEKLRNELLIRGAteglcvhslskELDVL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 482 KEHEKLMEGELEALRQEFKKKDKTlKENSRKLEEENENLRAELQccstQLESslnKYNTSQQviqDLNKEIALQKESLM- 560
Cdd:PLN02939 232 KEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLR----ELES---KFIVAQE---DVSKLSPLQYDCWWe 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 561 ---SLQAQLDKALQKEKHYLQTtitkeaydaLSRksaacQDDLTQALEKLNHVTSETKSLQQSLtqtqEKKAQLEEEIIA 637
Cdd:PLN02939 301 kveNLQDLLDRATNQVEKAALV---------LDQ-----NQDLRDKVDKLEASLKEANVSKFSS----YKVELLQQKLKL 362
|
250 260 270
....*....|....*....|....*....|....*..
gi 237858621 638 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMS 674
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES 399
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
471-718 |
1.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 471 LEDKREQLKKSKEHEKLMEGELEALRQEFKK--KDKTLKENSRKLEEENENLRAELQccstqlessLNKYNTSQQVIQDL 548
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEGYEL---------LKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 549 NKEIALQKESLMSLQAQLDKalqkekhylqttitkeaydaLSRKSAACQDDLTQALEKLNHVTS-ETKSLQQSLTQTQEK 627
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISE--------------------LEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 628 KAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAA 707
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250
....*....|.
gi 237858621 708 LKENLLEDDKE 718
Cdd:TIGR02169 383 TRDELKDYREK 393
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
147-272 |
1.21e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 147 RYPPSSSEECEDIKKILKHLQEQkdsqclhVEEYQNLVKDLRVELEavsEQKRNImkdmMKLELDLHGLREETSAHIeRK 226
Cdd:COG2433 399 REKEHEERELTEEEEEIRRLEEQ-------VERLEAEVEELEAELE---EKDERI----ERLERELSEARSEERREI-RK 463
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 237858621 227 DKDITILQCRLQELQLEftetqkltlkkdkfLQEKDEMLQELEKKL 272
Cdd:COG2433 464 DREISRLDREIERLERE--------------LEEERERIEELKRKL 495
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
378-713 |
1.31e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 378 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMK-------MNDMLDRIKHQH 450
Cdd:TIGR01612 513 ELYKPDEVPSKNIIGFDIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDsihlekeIKDLFDKYLEID 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 451 REQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELqccSTQ 530
Cdd:TIGR01612 593 DEIIYIN-KLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKI 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 531 LESSLNK-YNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNH 609
Cdd:TIGR01612 669 YEDDIDAlYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDK----IQNMETATVELHLSNIENKKNELLDIIVEIKKH 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 610 VTSE-TKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDL 688
Cdd:TIGR01612 745 IHGEiNKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAK----QNYDKSKEYI 820
|
330 340
....*....|....*....|....*
gi 237858621 689 KMLAAKEEQLREFQEEMAALKENLL 713
Cdd:TIGR01612 821 KTISIKEDEIFKIINEMKFMKDDFL 845
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
163-680 |
1.40e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 163 LKHLQEQKDsqclHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQL 242
Cdd:TIGR00618 381 IHTLQQQKT----TLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 243 EFTETQKLTLKkdkfLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQK 322
Cdd:TIGR00618 457 EKIHLQESAQS----LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 323 LKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRK 402
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 403 RVEELSLELSEALRKLENS----DKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQL 478
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRlhlqQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 479 KKSKEhekLMEGELEALRQEFKKkdktlkensrklEEENENLRAELQCCSTQLESSLNKYNTSQQviQDLNKEIALQKES 558
Cdd:TIGR00618 693 TYWKE---MLAQCQTLLRELETH------------IEEYDREFNEIENASSSLGSDLAAREDALN--QSLKELMHQARTV 755
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 559 LMSLQAQLDKALQKEKHYLQT-TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIA 637
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 237858621 638 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 680
Cdd:TIGR00618 836 RLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
317-635 |
1.63e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 317 QAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAgchlEDTQRKLQKGLL-----LDKQKADTIQeLQRELQMLQK--- 388
Cdd:PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAA----EEEVDELKSQLAdyqqaLDVQQTRAIQ-YQQAVQALERakq 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 389 -------ESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKtVAEQDMKMNDMLDR--IKHQHREqgsikck 459
Cdd:PRK04863 429 lcglpdlTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ-AYQLVRKIAGEVSRseAWDVARE------- 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 460 LEEDLQEAtKLLEDKREQLK-KSKEHEKLMEGE--LEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLN 536
Cdd:PRK04863 501 LLRRLREQ-RHLAEQLQQLRmRLSELEQRLRQQqrAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARE 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 537 KYNTSQQVIQDLNKEIA-LQKESLMSLQAQldkalqkekhylqttitkEAYDALSRKSAACQDDLTQALEKLNHVTSETK 615
Cdd:PRK04863 580 RRMALRQQLEQLQARIQrLAARAPAWLAAQ------------------DALARLREQSGEEFEDSQDVTEYMQQLLERER 641
|
330 340
....*....|....*....|
gi 237858621 616 SLQQSLTQTQEKKAQLEEEI 635
Cdd:PRK04863 642 ELTVERDELAARKQALDEEI 661
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-683 |
1.63e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 182 NLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEK 261
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL-ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 262 DEMLQELEKKLTQVQNSL-------LKKEKELEKQQcmatelemtvkeaKQDKSKEAECKALQAEVQKLKNSLEEAKQQE 334
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQnkikkqlSEKQKELEQNN-------------KKIKELEKQLNQLKSEISDLNNQKEQDWNKE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 335 rlaaqqaaqCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA 414
Cdd:TIGR04523 312 ---------LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 415 LRKLENSDKEKRQLQKTVAEQDmKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEA 494
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQE-KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 495 LRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKES---LMSLQAQLDKALQ 571
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKiekLESEKKEKESKIS 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 572 KEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRK 651
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEK 621
|
490 500 510
....*....|....*....|....*....|..
gi 237858621 652 LRGFHQESELEVHAFDKKLEEMSCQVLQWQKQ 683
Cdd:TIGR04523 622 AKKENEKLSSIIKNIKSKKNKLKQEVKQIKET 653
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
310-582 |
2.12e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 310 EAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEdtqrklQKGLLLDKQKADTIQELQRELQMLQKe 389
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLP------RLNLLADETLADRVEEIREQLDEAEE- 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 390 ssmAEKEQTSNRKRVEELSLELS------EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQG--------S 455
Cdd:PRK04863 909 ---AKRFVQQHGNALAQLEPIVSvlqsdpEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAaemlaknsD 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 456 IKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEE------ENENLRAELQccST 529
Cdd:PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDlgvpadSGAEERARAR--RD 1063
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 237858621 530 QLESSLnkyNTSQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTIT 582
Cdd:PRK04863 1064 ELHARL---SANRSRRNQLEKQLTFCEAEMDNLTKKL-RKLERDYHEMREQVV 1112
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
265-627 |
2.17e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.13 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 265 LQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQE-----RLAAQ 339
Cdd:pfam07111 72 LQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQREleeiqRLHQE 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 340 QAAQCKEEAALAGCHLEDTQRKLQKGL-LLDKQKADTIQEL---QRELQMLQKESSMAEKEQtsnrkrveELSLELSEAL 415
Cdd:pfam07111 152 QLSSLTQAHEEALSSLTSKAEGLEKSLnSLETKRAGEAKQLaeaQKEAELLRKQLSKTQEEL--------EAQVTLVESL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 416 RKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLE---EDLQEATKLLEDKREQLKKSKEHEKLMEGE- 491
Cdd:pfam07111 224 RKYVG---EQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVEllqVRVQSLTHMLALQEEELTRKIQPSDSLEPEf 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 492 -------LEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQA 564
Cdd:pfam07111 301 pkkcrslLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQM 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237858621 565 QLDKALQKEKHYLQTTIT-KEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEK 627
Cdd:pfam07111 381 ELSRAQEARRRQQQQTASaEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRK 444
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
326-516 |
2.64e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 326 SLEEAkqQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLlldKQKADTIQELQRELQMLQKEssMAEKEQtsnrkRVE 405
Cdd:COG2433 377 SIEEA--LEELIEKELPEEEPEAEREKEHEERELTEEEEEI---RRLEEQVERLEAEVEELEAE--LEEKDE-----RIE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 406 ELSLELSEALRKLENSDKEKRQLQKTVAEqdmkmNDMLDRikhqhreqgsikcKLEEdLQEATKLLEDKREQLKKSkeHE 485
Cdd:COG2433 445 RLERELSEARSEERREIRKDREISRLDRE-----IERLER-------------ELEE-ERERIEELKRKLERLKEL--WK 503
|
170 180 190
....*....|....*....|....*....|.
gi 237858621 486 KLMEGELEALrqefKKKDKTLKENSRKLEEE 516
Cdd:COG2433 504 LEHSGELVPV----KVVEKFTKEAIRRLEEE 530
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
491-663 |
2.89e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 44.67 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 491 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstqLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKAL 570
Cdd:pfam13166 322 DVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE-----LDSVDAKIESINDLVASINELIAKHNEITDNFEEEKNKAK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 571 QKEKHYLQTTITKEaYDALSRKSAACQDDLTQALEKLNHVTSETKSLQqsltqtqEKKAQLEEEIIAYEERMKKLNTELR 650
Cdd:pfam13166 397 KKLRLHLVEEFKSE-IDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLR-------EEIKELEAQLRDHKPGADEINKLLK 468
|
170
....*....|...
gi 237858621 651 KLrgFHQESELEV 663
Cdd:pfam13166 469 AF--GFGELELSF 479
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
86-524 |
3.10e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 86 MIQEHQETQKRLSEVWQKV-----------SQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTAThryppssSE 154
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 155 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLhglrEETSAHIERKDKDITILQ 234
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL----EEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 235 CRLQEL--QLEFTETQ--KLTLKKDKFLQEKDEM---LQELEKKLTQVQNSLLKKEKELEKQQCMATELEM-------TV 300
Cdd:PRK02224 391 EEIEELreRFGDAPVDlgNAEDFLEELREERDELrerEAELEATLRTARERVEEAEALLEAGKCPECGQPVegsphveTI 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 301 KEAKQDKSK-EAECKALQAEVQKLKNSLEEAKQQERLAAQqAAQCKEEAALAGCHLEDTQRKLQkgllldkQKADTIQEL 379
Cdd:PRK02224 471 EEDRERVEElEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAERRETIE-------EKRERAEEL 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 380 QRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKtVAEQDMKMNDMLDRIKhqhreqgsikcK 459
Cdd:PRK02224 543 RERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIE-----------R 610
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 237858621 460 LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKT--------LKENSRKLEEENENLRAEL 524
Cdd:PRK02224 611 LREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyleqVEEKLDELREERDDLQAEI 683
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
370-716 |
3.35e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 370 KQKADTIQELQRELQMLQKESSMAEKE--QTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIK 447
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 448 HQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 527
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 528 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTItkEAYDALSRKSAACQDDLTQALEKL 607
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA--EELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 608 NHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEmscqvlqwQKQHQND 687
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQ--------AEEYQEL 400
|
330 340
....*....|....*....|....*....
gi 237858621 688 LKMLAAKEEQLREFQEEMAALKENLLEDD 716
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALDEEE 429
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
310-522 |
3.92e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 310 EAECKALQAEVQKLKNS---LEEAKQQERL------AAQQAAQCKEEAA-----LAGCHLEDTQRKLQkglLLDKQkadt 375
Cdd:COG4913 224 FEAADALVEHFDDLERAheaLEDAREQIELlepireLAERYAAARERLAeleylRAALRLWFAQRRLE---LLEAE---- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 376 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA-LRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqg 454
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLA------- 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 237858621 455 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRA 522
Cdd:COG4913 370 ----ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
258-483 |
4.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 258 LQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQD-KSKEAECKALQAEVQKLKNSLEEAKQQ--E 334
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElAALEAELAELEKEIAELRAELEAQKEElaE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 335 RLAAQQ--AAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTsnrkrveelslELS 412
Cdd:COG4942 109 LLRALYrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA-----------ELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 237858621 413 EALRKLEnsdKEKRQLQKTVAEQdmkmNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKE 483
Cdd:COG4942 178 ALLAELE---EERAALEALKAER----QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
307-428 |
4.18e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 44.17 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 307 KSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALagchLEDtqrklqkgllLDKQKADTIQELQRELQML 386
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVA----LEG----------LAAELEEKQQELEAQLEQL 203
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 237858621 387 QKESSMAEKEQTSNRKRVEElslelsEALRKLENSDKEKRQL 428
Cdd:PRK11448 204 QEKAAETSQERKQKRKEITD------QAAKRLELSEEETRIL 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
302-718 |
4.40e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 302 EAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERlaaqQAAQCKEEAALAgchLEDTQRKLQkgllldkqkadTIQELQR 381
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQRE----QARETRDEADEV---LEEHEERRE-----------ELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 382 ELQMLQKESSMAEKEQTSNRKRVEElslelsealrklensdkekrqLQKTVAEQDMKMNDMLDRikhqhreqgsikCKLE 461
Cdd:PRK02224 259 EIEDLRETIAETEREREELAEEVRD---------------------LRERLEELEEERDDLLAE------------AGLD 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 462 EDLQEAtklLEDKREQLKKSKE--HEKLMEGELEAlrQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYN 539
Cdd:PRK02224 306 DADAEA---VEARREELEDRDEelRDRLEECRVAA--QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 540 TSQQVIQDLNKEIAlqkeslmSLQAQLDKAlqkekhylqttitKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQ 619
Cdd:PRK02224 381 DRREEIEELEEEIE-------ELRERFGDA-------------PVDLGNAEDFLEELREERDELREREAELEATLRTARE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 620 SLTQTQE--------------KKAQLEEEIIAYEERMKKLNTELRKLRGFHQESElEVHAFDKKLEEMSCQVLQWQKQHQ 685
Cdd:PRK02224 441 RVEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE-ERLERAEDLVEAEDRIERLEERRE 519
|
410 420 430
....*....|....*....|....*....|...
gi 237858621 686 NDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 718
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
462-653 |
4.93e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 462 EDLQEATKLLEDKREQLK-------KSKEHEKLME--GELEALRQEFK-----KKDKTLKENSRKLEEENENLRAELQCC 527
Cdd:COG4913 235 DDLERAHEALEDAREQIEllepireLAERYAAARErlAELEYLRAALRlwfaqRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 528 STQLESSLNKYNTSQQVIQDL-NKEIALQKESLMSLQAQLDKALQKEKHY--------LQTTITKEAYDALSRKSAACQD 598
Cdd:COG4913 315 EARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLeallaalgLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 237858621 599 DLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 653
Cdd:COG4913 395 ALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
10-464 |
5.20e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 10 EKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLECQVKMLQGELGGIMGQEPEN-KGDHSKVRIYTSpcMIQ 88
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiQGKNESLEKVSS--LTA 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 89 EHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQE 168
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 169 QKDSQCLHVEEYQNLVKDLRVELE----AVSEQKRN---IMKDMMKLELDLHGLR---EETSAHIERKDKDITILQCRLQ 238
Cdd:pfam15921 549 ECEALKLQMAEKDKVIEILRQQIEnmtqLVGQHGRTagaMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVS 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 239 ELQLEFTE-----TQKLTLKKDkFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaEC 313
Cdd:pfam15921 629 DLELEKVKlvnagSERLRAVKD-IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM------QL 701
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 314 KALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKlqkgllldkqkadtIQELQRELQMLQKESSMA 393
Cdd:pfam15921 702 KSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK--------------IQFLEEAMTNANKEKHFL 767
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 237858621 394 EKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKH-----QHREQGSIKCKLEEDL 464
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAEcqdiiQRQEQESVRLKLQHTL 843
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
300-704 |
6.28e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 300 VKEAKQDKSKEAECKALQAE-VQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDK-QKADTIQ 377
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElKKAEEKK 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 378 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIK 457
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 458 CKLEED---LQEATKLLEDKR--EQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 532
Cdd:PTZ00121 1371 KKKEEAkkkADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 533 SSLNKYNTSQQViqdlnKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQ--DDLTQALEKLNhv 610
Cdd:PTZ00121 1451 KKAEEAKKAEEA-----KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKK-- 1523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 611 TSETKSLQQSLTQTQEKKAQLE---EEIIAYEERMKKlnTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQND 687
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKkkaDELKKAEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
410
....*....|....*..
gi 237858621 688 LKMLAAKEEQLREFQEE 704
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEA 1618
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
304-632 |
6.34e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 304 KQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGchledtqrklqkgllldkQKADTIQELQREL 383
Cdd:pfam17380 289 QQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYA------------------EQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 384 QMLQKEssmaEKEQTSNRKRVEELSLELSEaLRKLENSDKEKRQLQKTVAE-------QDMKMNDMLDRIKHQHREQGSI 456
Cdd:pfam17380 351 ERIRQE----ERKRELERIRQEEIAMEISR-MRELERLQMERQQKNERVRQeleaarkVKILEEERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 457 KCKLEEDLQEATKLLEDKREqlkksKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstqlessln 536
Cdd:pfam17380 426 RAEQEEARQREVRRLEEERA-----REMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE------------------ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 537 kyNTSQQVIQDLNKEIaLQKESLMSLQAQLD-----KALQKEKHYLQTTITKEAydalSRKSAACQDDLTQALEklnhvt 611
Cdd:pfam17380 483 --KRDRKRAEEQRRKI-LEKELEERKQAMIEeerkrKLLEKEMEERQKAIYEEE----RRREAEEERRKQQEME------ 549
|
330 340
....*....|....*....|.
gi 237858621 612 sETKSLQQSLTQTQEKKAQLE 632
Cdd:pfam17380 550 -ERRRIQEQMRKATEERSRLE 569
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
370-772 |
6.93e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 370 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ 449
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 450 HREQGSIKC--KLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 527
Cdd:COG4717 139 AELAELPERleELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 528 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEA-------------YDALSRKSA 594
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllallFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 595 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMs 674
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEELEQEIAAL- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 675 cqvlqWQKQHQNDLKMLAAKEEQLREFQE---EMAALKENLLEDDKEpccLPQWSVPKDTCRLYRGNDQIMTNLEQWAKQ 751
Cdd:COG4717 376 -----LAEAGVEDEEELRAALEQAEEYQElkeELEELEEQLEELLGE---LEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420
....*....|....*....|.
gi 237858621 752 QKVANEKLGnQLREQVKYIAK 772
Cdd:COG4717 448 LEELREELA-ELEAELEQLEE 467
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
126-486 |
7.64e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 126 LEREKALIKLQADFASCTA--THRYPPSSSEECEDIKKILKHLQEQKDsqclhVEEYQNLVKDLRVELEAVSEQKRNIMK 203
Cdd:pfam17380 236 MERRKESFNLAEDVTTMTPeyTVRYNGQTMTENEFLNQLLHIVQHQKA-----VSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 204 DMMKLEldlhGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMlQELEKKLTQVQNSLLKKE 283
Cdd:pfam17380 311 EVERRR----KLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQ-EEIAMEISRMRELERLQM 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 284 KELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQErlaaQQAAQCKEEAALAGCHLEDTQRKLQ 363
Cdd:pfam17380 386 ERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE----VRRLEEERAREMERVRLEEQERQQQ 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 364 KGLLldKQKADTIQELQRELQMLQKESSMAEKEQTSN-RKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDM 442
Cdd:pfam17380 462 VERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAE 539
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 237858621 443 LDRIKHQH-REQGSIKCKLEEDLQEATKL--LEDKREQLKKSKEHEK 486
Cdd:pfam17380 540 EERRKQQEmEERRRIQEQMRKATEERSRLeaMEREREMMRQIVESEK 586
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
265-571 |
8.25e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 265 LQELEKKLTQVQNSLLKKEKELEKQQcmaTELEMTVKEAKQDKSKEAE-CKALQAEVQKLKNSLEEAKQQERLAAQQAAQ 343
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRAR---IELEKKASALKRQLDRESDrNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 344 CKEeaalagcHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDK 423
Cdd:pfam05557 81 KKK-------YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 424 EKRQL---QKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEE-----DLQEATKLLEDKREQLKKSKEHEKLMEGELEAL 495
Cdd:pfam05557 154 LRQNLekqQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSElaripELEKELERLREHNKHLNENIENKLLLKEEVEDL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 496 RQEFKKKDKTlKENSRKLEEENENLRAELQCCSTQLESSLNKYNT----SQQVIQDLNKEIAL--QKESLMSLQAQLDKA 569
Cdd:pfam05557 234 KRKLEREEKY-REEAATLELEKEKLEQELQSWVKLAQDTGLNLRSpedlSRRIEQLQQREIVLkeENSSLTSSARQLEKA 312
|
..
gi 237858621 570 LQ 571
Cdd:pfam05557 313 RR 314
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
251-718 |
1.01e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 251 TLKKDKFLQEKDEMLQELEKKLTQVQNsllkkekelEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEA 330
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTP---------CMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 331 KQQERLAAQQAAQCKEEAALAGCHledtqRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEElsLE 410
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVL-----EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL--LM 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 411 LSEALRKLENSDKEKRQLQKTVAEQDmkmndmlDRIKHQHREQGSIKCKLEEDLQEATKLLEdKREQLKKSKEHEKLMEG 490
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQE-------IHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 491 ELEALRQEfkkKDKTLKENSRKLEEENENLRAELQcCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKAL 570
Cdd:TIGR00618 401 ELDILQRE---QATIDTRTSAFRDLQGQLAHAKKQ-QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 571 QKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLN-----------------HVTSETKSLQQSLTQTQEKKAQLEE 633
Cdd:TIGR00618 477 TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNparqdidnpgpltrrmqRGEQTYAQLETSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 634 EIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVlqwQKQHQNDLKMLAAKEEQLREFQEEMAALKENLL 713
Cdd:TIGR00618 557 QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT---EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH 633
|
....*
gi 237858621 714 EDDKE 718
Cdd:TIGR00618 634 LQQCS 638
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
158-718 |
1.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 158 DIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRL 237
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 238 QELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQ 317
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 318 AEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQ 397
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 398 TSNRKrveelsLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQ 477
Cdd:pfam02463 470 SEDLL------KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 478 LKKSKEHEKLMEGELEAL-RQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQK 556
Cdd:pfam02463 544 AISTAVIVEVSATADEVEeRQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 557 ESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE--- 633
Cdd:pfam02463 624 VVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEikk 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 634 EIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLL 713
Cdd:pfam02463 704 KEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKT 783
|
....*
gi 237858621 714 EDDKE 718
Cdd:pfam02463 784 EKLKV 788
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
87-552 |
1.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 87 IQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLqadfasctathryppssSEECEDIKKILKHL 166
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL-----------------KDEQNKIKKQLSEK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 167 QEQKDSQCLHVEEYQNLVKDLRVELEAVSEQK-RNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFT 245
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKeQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 246 ETQKLTLKKDKFLQEKDEMLQELEK-------KLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKeaeckaLQA 318
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL------LEK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 319 EVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQT 398
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 399 SNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreQGSIKCKLEEDLQEATKLLEDKREQL 478
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK-----KENLEKEIDEKNKEIEELKQTQKSLK 581
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237858621 479 KKSKEHEKLMEgELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI 552
Cdd:TIGR04523 582 KKQEEKQELID-QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
476-710 |
1.24e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 476 EQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKyntsqqvIQDLNKEIALq 555
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA-------LNKLNTAAAK- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 556 keslmsLQAQLDKaLQKEKHYLQTTITkeaydalsrkSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI 635
Cdd:PHA02562 267 ------IKSKIEQ-FQKVIKMYEKGGV----------CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237858621 636 IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDLKMLAAKEEQLREFQEEMAALKE 710
Cdd:PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE----ELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
442-662 |
1.24e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 442 MLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKkkdktlkensrKLEEENENLR 521
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-----------ELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 522 AELQCCSTQLEsslnkyntsqqvIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQttiTKEAYDALSRKSAACQDDLT 601
Cdd:COG4717 116 EELEKLEKLLQ------------LLPLYQELEALEAELAELPERLEELEERLEELRE---LEEELEELEAELAELQEELE 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 237858621 602 QALEKLNHVTSET-KSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELE 662
Cdd:COG4717 181 ELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
563-791 |
1.26e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 563 QAQLDKALQKEKHYLQTTI--TKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE 640
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 641 RMKKLNTELRKLRG--------------FHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMA 706
Cdd:COG4942 98 ELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 707 ALKENLLEDDKEpcclpqwsvpkdTCRLYRGNDQIMTNLEQWAKQQKVANEKLGNQLREQVKYIAKLSGEKDREPTRASS 786
Cdd:COG4942 178 ALLAELEEERAA------------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....*
gi 237858621 787 PNTTR 791
Cdd:COG4942 246 AGFAA 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
228-469 |
1.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 228 KDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQvqnsllkkekelekqqcmateLEMTVKEAKQD- 306
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA---------------------LARRIRALEQEl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 307 KSKEAECKALQAEVQKLKNSLEEAKQQ--ERLAAQQ--AAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRE 382
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEElaELLRALYrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 383 LQMLQKessmAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEE 462
Cdd:COG4942 159 LAELAA----LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*..
gi 237858621 463 DLQEATK 469
Cdd:COG4942 235 EAAAAAE 241
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
295-436 |
2.67e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 295 ELEMTVKEAKqdkSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAAlagchledtqrklqkgllldKQKAD 374
Cdd:PRK00409 531 ELEQKAEEAE---ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA--------------------KKEAD 587
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 237858621 375 TIQELQRELQmLQKESSMAEKEQTSNRKRveelsleLSEALRKLENSDKEKRQLQKTVAEQD 436
Cdd:PRK00409 588 EIIKELRQLQ-KGGYASVKAHELIEARKR-------LNKANEKKEKKKKKQKEKQEELKVGD 641
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
411-593 |
2.76e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 411 LSEALRKLENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQHREQGSIKcklEEDLQEATKLLEDKREQLKKSKEheklmeg 490
Cdd:PRK12705 32 AKEAERILQEAQKEAEEKLE---AALLEAKELLLRERNQQRQEARRE---REELQREEERLVQKEEQLDARAE------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 491 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNkyntsQQVIQDLNKEIALQKESLMSLQAQLDKAL 570
Cdd:PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQAR-----KLLLKLLDAELEEEKAQRVKKIEEEADLE 173
|
170 180
....*....|....*....|....*
gi 237858621 571 QKEK--HYLQTTITKEAYDALSRKS 593
Cdd:PRK12705 174 AERKaqNILAQAMQRIASETASDLS 198
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
420-648 |
2.76e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 41.38 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 420 NSDKEKRQLQKTVAEQDMKM-----NDMLDRIKHQHREQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEA 494
Cdd:pfam09726 363 NSKKQKGPGGKSGARHKDPAencipNNQLSKPDALVRLEQDIK-KLKAELQASRQTEQELRSQISSLTSLERSLKSELGQ 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 495 LRQefkkkdktlkensrkleeENENLRaelqccsTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEK 574
Cdd:pfam09726 442 LRQ------------------ENDLLQ-------TKLHNAVSAKQKDKQTVQQLEKRLKAEQEARASAEKQLAEEKKRKK 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237858621 575 HYLQTTITKEAYDALSRKSaaCQDDLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLE---EEIIAYEERMKklNTE 648
Cdd:pfam09726 497 EEEATAARAVALAAASRGE--CTESLKQRKRELE---SEIKKLTHDIKLKEEQIRELEikvQELRKYKESEK--DTE 566
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
177-410 |
2.80e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 177 VEEYQNLVKDLRVE-----LEAVSEQKRNIMKDMMKLELDLHGLREETSahIERKDKDITILQCRLQELQLEFTETQKLt 251
Cdd:COG3206 158 AEAYLEQNLELRREearkaLEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAE- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 252 lkkdkfLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKS---KEAECKALQAEVQKLKNSLE 328
Cdd:COG3206 235 ------LAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 329 EAKQQERLAAQQAAQckeeaalagcHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELS 408
Cdd:COG3206 309 QEAQRILASLEAELE----------ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
..
gi 237858621 409 LE 410
Cdd:COG3206 379 LA 380
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
293-423 |
2.99e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 293 ATELEMTVKEAKQdksKEAECKALQAEVQKLKNSLEEAKQQ-ERLAAQqaaqckeeaalagchLEDTQRKLQKGLLLDKQ 371
Cdd:COG2433 405 ERELTEEEEEIRR---LEEQVERLEAEVEELEAELEEKDERiERLERE---------------LSEARSEERREIRKDRE 466
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 237858621 372 kadtIQELQRELQMLQKESSMAEKEQTSNRKRVEELslelsEALRKLENSDK 423
Cdd:COG2433 467 ----ISRLDREIERLERELEEERERIEELKRKLERL-----KELWKLEHSGE 509
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
232-718 |
3.19e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 232 ILQCRLQELQLEFTETQKLTLKKDKFLqEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEA 311
Cdd:TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDRIL-ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 312 ECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGC-----HLEDTQRKLQKGLlldKQKADTIQELQRELQML 386
Cdd:TIGR00606 527 LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpnkkQLEDWLHSKSKEI---NQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 387 QKESSMAEKEQTSNRKRVEELSLELSEAL------RKLENSDKEKRQLQKTVAEQDMKMN-----------------DML 443
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLFDVCgsqdeeSDLERLKEEIEKSSKQRAMLAGATAvysqfitqltdenqsccPVC 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 444 DRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKE---NSRKLEEENENL 520
Cdd:TIGR00606 684 QRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPElrnKLQKVNRDIQRL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 521 RAELQCCSTQLESSLNKYNTS-------------QQVIQDLNKEIALQKESLMSLQ-----AQLDKALQKEKHYLQTTIT 582
Cdd:TIGR00606 764 KNDIEEQETLLGTIMPEEESAkvcltdvtimerfQMELKDVERKIAQQAAKLQGSDldrtvQQVNQEKQEKQHELDTVVS 843
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 583 KeayDALSRKsaaCQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELE 662
Cdd:TIGR00606 844 K---IELNRK---LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 237858621 663 VHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMaalkENLLEDDKE 718
Cdd:TIGR00606 918 LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI----ENKIQDGKD 969
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
376-495 |
3.47e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 376 IQELQRELQMLQKESSMAEKEQtsnrkrvEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 455
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQ-------DEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYG 485
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 237858621 456 IKCKLEEDLQEATKLLEDKREQLKKS-KEHE--------------KLMEGELEAL 495
Cdd:COG0542 486 KIPELEKELAELEEELAELAPLLREEvTEEDiaevvsrwtgipvgKLLEGEREKL 540
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
253-715 |
3.49e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 253 KKDKFLQEKDEMLQELEKKLTQVQNSllkKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEE--- 329
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESE---LKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEilh 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 330 --------------AKQQERLAAQQAAQCKEEaalagcHLEDTQRKLQKgLLLDKQKADT-IQELQRELQMLQKESSMAE 394
Cdd:pfam01576 79 elesrleeeeersqQLQNEKKKMQQHIQDLEE------QLDEEEAARQK-LQLEKVTTEAkIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 395 KEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEqdmkMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDK 474
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISD----LEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAEL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 475 REQLKKSKEHEKLMEGELEAL----------RQEFKKKDKTLKENSRKLEEENENLRA--------------ELQCCSTQ 530
Cdd:pfam01576 228 QAQIAELRAQLAKKEEELQAAlarleeetaqKNNALKKIRELEAQISELQEDLESERAarnkaekqrrdlgeELEALKTE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 531 LESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQ--KEKHYLQTTITKEAYDALSRKSAACqDDLTQALEKLN 608
Cdd:pfam01576 308 LEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQemRQKHTQALEELTEQLEQAKRNKANL-EKAKQALESEN 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 609 -HVTSETKSLQQSLTQTQEKKAQLEEEI--------------IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEM 673
Cdd:pfam01576 387 aELQAELRTLQQAKQDSEHKRKKLEGQLqelqarlseserqrAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL 466
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 237858621 674 SCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLED 715
Cdd:pfam01576 467 ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEE 508
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
314-419 |
3.62e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.48 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 314 KALQAEVQKLKNSLEEAKQ-----QERLAAQQAAQCKEEAALAgchleDTQRKLqkglllDKQKADTIQELQRELQMLQK 388
Cdd:TIGR04320 257 AALQAKLATAQADLAAAQTalntaQAALTSAQTAYAAAQAALA-----TAQKEL------ANAQAQALQTAQNNLATAQA 325
|
90 100 110
....*....|....*....|....*....|.
gi 237858621 389 ESSMAEKEQTSNRKRVEELSLELSEALRKLE 419
Cdd:TIGR04320 326 ALANAEARLAKAKEALANLNADLAKKQAALD 356
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
317-635 |
3.65e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 317 QAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAgchlEDTQRKLqKGLLLDKQKAdtIQELQRelQMLQKESSMAEKE 396
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAA----EEEVDSL-KSQLADYQQA--LDVQQT--RAIQYQQAVQALE 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 397 QTSNRKRVEELSLELSEALrkLENSDKEKRQLQKTVAEQDMKMNDMlDRIKHQHREQGSIKCKL------EEDLQEATKL 470
Cdd:COG3096 424 KARALCGLPDLTPENAEDY--LAAFRAKEQQATEEVLELEQKLSVA-DAARRQFEKAYELVCKIageverSQAWQTAREL 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 471 LEDKREQ---------LK-KSKEHEKLME--GELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLnky 538
Cdd:COG3096 501 LRRYRSQqalaqrlqqLRaQLAELEQRLRqqQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAV--- 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 539 ntsqqviqdlnkeialqkESLMSLQAQLDKALQKEKHYLQTT-ITKEAYDALSR---KSAACQDDLTQALEKLNHVTSET 614
Cdd:COG3096 578 ------------------EQRSELRQQLEQLRARIKELAARApAWLAAQDALERlreQSGEALADSQEVTAAMQQLLERE 639
|
330 340
....*....|....*....|.
gi 237858621 615 KSLQQSLTQTQEKKAQLEEEI 635
Cdd:COG3096 640 REATVERDELAARKQALESQI 660
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
26-645 |
3.70e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 26 IASLERSLNLYRD---KYQSSLSNIELLECQVKMLQGELGGIMGQEPENKGDHSKVriytspcmiqehQETQKRLSEVWQ 102
Cdd:PRK01156 161 INSLERNYDKLKDvidMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSIT------------LKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 103 KVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQEQKdsqclhVEEYQN 182
Cdd:PRK01156 229 NAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY------INDYFK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 183 LVKDLrvelEAVSEQKRNIMKDMMKLELDLHGLREETSAHierkdKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKD 262
Cdd:PRK01156 303 YKNDI----ENKKQILSNIDAEINKYHAIIKKLSVLQKDY-----NDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 263 EMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSK-EAECKALQAEVQKLKNSLEEAKQQERLAAQQA 341
Cdd:PRK01156 374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDiSSKVSSLNQRIRALRENLDELSRNMEMLNGQS 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 342 AqckeeAALAGCHLEDtqrklQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlelSEALRKLENS 421
Cdd:PRK01156 454 V-----CPVCGTTLGE-----EKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE---SEEINKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 422 DkekRQLQKTVAEQDMKMNDmLDRIKHQHREQGSIKcklEEDLQEATKLLEDKREQLKKSKEHEKLMEgeLEALRQEFKK 501
Cdd:PRK01156 521 Y---NKIESARADLEDIKIK-INELKDKHDKYEEIK---NRYKSLKLEDLDSKRTSWLNALAVISLID--IETNRSRSNE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 502 KDKTLKENSRKLEE---ENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHylQ 578
Cdd:PRK01156 592 IKKQLNDLESRLQEieiGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPD--L 669
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 579 TTITKEAYDAlsrksaacQDDLTQ---ALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKL 645
Cdd:PRK01156 670 KEITSRINDI--------EDNLKKsrkALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
368-572 |
4.07e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 368 LDKQKADtIQELQRELQMLQKESSM--AEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLdr 445
Cdd:COG3206 184 LPELRKE-LEEAEAALEEFRQKNGLvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 446 ikhqhreQGSIKCKLEEDLQEATKLLEDKREQLkkSKEHEKL--MEGELEALRQEFKKKDKTLKENSRK----LEEENEN 519
Cdd:COG3206 261 -------QSPVIQQLRAQLAELEAELAELSARY--TPNHPDViaLRAQIAALRAQLQQEAQRILASLEAeleaLQAREAS 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 237858621 520 LRAELQccstQLESSLNKYNTSQQVIQDLNKEIAlqkeslmSLQAQLDKALQK 572
Cdd:COG3206 332 LQAQLA----QLEARLAELPELEAELRRLEREVE-------VARELYESLLQR 373
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
305-718 |
4.35e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 305 QDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQ 384
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTIC 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 385 MLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDL 464
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 465 QEATKLLEDKREQLKKSKEHEKLMEgelealrqEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKyntsqqv 544
Cdd:pfam05483 408 EELKKILAEDEKLLDEKKQFEKIAE--------ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE------- 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 545 IQDLNKEIALQKESLMSLQAQLDKALQKEKHylqttITKEAYDALSrksaacqdDLTQALEKLNHVTSETKSLQQSLTQT 624
Cdd:pfam05483 473 VEDLKTELEKEKLKNIELTAHCDKLLLENKE-----LTQEASDMTL--------ELKKHQEDIINCKKQEERMLKQIENL 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 625 QEKKAQLEEEIIAYEERMKKLNTELR-KLrgfhQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQE 703
Cdd:pfam05483 540 EEKEMNLRDELESVREEFIQKGDEVKcKL----DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
410
....*....|....*
gi 237858621 704 EMAALKENLLEDDKE 718
Cdd:pfam05483 616 ENKALKKKGSAENKQ 630
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
262-592 |
4.60e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 262 DEMLQELEKKLTQVQNSLLKKEKELEKqQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQA 341
Cdd:pfam02463 168 KRKKKEALKKLIEETENLAELIIDLEE-LKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 342 AQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENS 421
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 422 DKEKrQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKK 501
Cdd:pfam02463 327 EKEL-KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 502 KDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQvIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTI 581
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLT-EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330
....*....|.
gi 237858621 582 TKEAYDALSRK 592
Cdd:pfam02463 485 QLELLLSRQKL 495
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
401-560 |
5.15e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 401 RKRVEELSLELSEALRK--LENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQH----REQGSIKCKLEEDLQEATKLLEDK 474
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKriLEEAKKEAEAIKK---EALLEAKEEIHKLRNEFekelRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 475 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLraelqccstqleSSLNKYNTSQQVIQDLNKEIAL 554
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI------------SGLTAEEAKEILLEKVEEEARH 169
|
....*.
gi 237858621 555 QKESLM 560
Cdd:PRK12704 170 EAAVLI 175
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
190-714 |
5.71e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 190 ELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKdkdiTILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELE 269
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEK----NALQEQLQAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 270 KKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSK--------EAECKALQAEV----------QKLKNSLEE-- 329
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqlekvttEAKIKKLEEDIllledqnsklSKERKLLEEri 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 330 -------AKQQERLAAQQAAQCKEEAALAgcHLEDTQRKLQKGLL-LDKQK----------ADTIQELQRELQMLQKESS 391
Cdd:pfam01576 162 seftsnlAEEEEKAKSLSKLKNKHEAMIS--DLEERLKKEEKGRQeLEKAKrklegestdlQEQIAELQAQIAELRAQLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 392 MAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEE--DLQEATK 469
Cdd:pfam01576 240 KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtlDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 470 LLEDKREQ----LKKSKEHEKLM-EGELEALRQ--------------EFKKKDKTLKENSRKLEEENENLRAELQCCSTQ 530
Cdd:pfam01576 320 ELRSKREQevteLKKALEEETRShEAQLQEMRQkhtqaleelteqleQAKRNKANLEKAKQALESENAELQAELRTLQQA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 531 LESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKaLQKEKHYLQTTitkeaydalsrksaacqddLTQALEKLNHV 610
Cdd:pfam01576 400 KQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK-LQSELESVSSL-------------------LNEAEGKNIKL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 611 TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKM 690
Cdd:pfam01576 460 SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT 539
|
570 580
....*....|....*....|....
gi 237858621 691 LAAKEEQLREFQEEMAALKENLLE 714
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEE 563
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
461-660 |
5.79e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 461 EEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENS---RKLEEENENLRAELQccstQLESSLNK 537
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISselPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 538 YNTSQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTI--------TKEAYDALSRKSAACQDDLTQALEKLNH 609
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERI-EELKKEIEELEEKVkelkelkeKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 237858621 610 VTSETKSLQQSLTQTQEKKAQLEEeiiaYEERMKKLNTELRKLRGFHQESE 660
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYE 365
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
504-641 |
8.19e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.04 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 504 KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIAL--------------QKESLMSLQAQLDKA 569
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASlkesnslaetqlkcMAESYEDLETRLTEL 763
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 237858621 570 LQKEKHYLQTTITKEAydALSRKSAACQDDLTQALE-KLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEER 641
Cdd:pfam05911 764 EAELNELRQKFEALEV--ELEEEKNCHEELEAKCLElQEQLERNEKKESSNCDADQEDKKLQQEKEITAASEK 834
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
314-572 |
8.93e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.41 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 314 KALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAALAgCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQK--ESS 391
Cdd:pfam15905 63 KKSQKNLKESKDQKELEKEIRALVQERGEQDKRLQALE-EELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRvnELL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 392 MAEKEQTSNRKRVEELSLELSEALRKLENSDKEK-----------RQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKL 460
Cdd:pfam15905 142 KAKFSEDGTQKKMSSLSMELMKLRNKLEAKMKEVmakqegmegklQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSET 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 461 EEDLQEATKLlEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNT 540
Cdd:pfam15905 222 EKLLEYITEL-SCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEE 300
|
250 260 270
....*....|....*....|....*....|..
gi 237858621 541 SQqviQDLNKEIALQKESLMSLQAQLDKALQK 572
Cdd:pfam15905 301 KE---QTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
401-523 |
9.79e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237858621 401 RKRVEELSL--ELSEALRKLENSDKEKRQLQKtvaEQDmkmndmldrIKHQHREQgsikcKLEEDLQEatklLEDKREQL 478
Cdd:COG0542 401 RVRMEIDSKpeELDELERRLEQLEIEKEALKK---EQD---------EASFERLA-----ELRDELAE----LEEELEAL 459
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 237858621 479 KKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAE 523
Cdd:COG0542 460 KARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAEL 504
|
|
| |
