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Conserved domains on  [gi|269973882|ref|NP_001161743|]
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probable G-protein coupled receptor 156 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
48-313 3.12e-156

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


:

Pssm-ID: 320419  Cd Length: 268  Bit Score: 455.74  E-value: 3.12e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  48 VLLGIVWTFLSCGLLLILFFLAFTIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSML 127
Cdd:cd15292    1 VLLGVMWTLLSCGILLALFFLAFTIRFRNNRIVKMSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 128 CIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGK----DVS 203
Cdd:cd15292   79 CIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIKDIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKamekGIS 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 204 CTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNL 283
Cdd:cd15292  159 YSVSRMDFCASLYSDLWIILISGFKGSLLLYGTYLAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNL 238
                        250       260       270
                 ....*....|....*....|....*....|
gi 269973882 284 VFGLTSGGIFVCTTTINCFIFIPQLKQWKA 313
Cdd:cd15292  239 VYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
392-709 3.64e-06

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  392 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 469
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  470 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 549
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  550 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 627
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  628 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 699
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 269973882  700 RAPSPAAPCL 709
Cdd:PHA03307  443 SPPPPPGRVR 452
 
Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
48-313 3.12e-156

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320419  Cd Length: 268  Bit Score: 455.74  E-value: 3.12e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  48 VLLGIVWTFLSCGLLLILFFLAFTIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSML 127
Cdd:cd15292    1 VLLGVMWTLLSCGILLALFFLAFTIRFRNNRIVKMSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 128 CIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGK----DVS 203
Cdd:cd15292   79 CIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIKDIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKamekGIS 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 204 CTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNL 283
Cdd:cd15292  159 YSVSRMDFCASLYSDLWIILISGFKGSLLLYGTYLAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNL 238
                        250       260       270
                 ....*....|....*....|....*....|
gi 269973882 284 VFGLTSGGIFVCTTTINCFIFIPQLKQWKA 313
Cdd:cd15292  239 VYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
44-306 3.10e-28

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 113.91  E-value: 3.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882   44 SLSPVLLGIVWTFLSCGLLLILFFLAFTIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQdvlvgssMETLIQTR 123
Cdd:pfam00003   2 DLSAPWGIVLEALAALGILLTLVLLVVFLLHRKTPIVKASNRSLSFLLLLGLLLLFLLAFLFIGK-------PTVTCALR 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  124 LSMLCIGTSLVFGPILGKSWRLYKVFTQRVPdkrvIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGKDVS 203
Cdd:pfam00003  75 RFLFGVGFTLCFSCLLAKTFRLVLIFRRRKP----GPRGWQLLLLALGLLLVQVIILTEWLIDPPFPEKDNLSEGKIILE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  204 CT-STSTHFCASRYSDVWIALIWGC----KgllllygaylagltGHVSSPPVNQSLTIMVGVnLLVLAAGLLFVVTRYLH 278
Cdd:pfam00003 151 CEgSTSIAFLDFVLAYVGLLLLAGFllafK--------------TRKLPDNFNEAKFITFSM-LLSVLIWVAFIPMYLYG 215
                         250       260       270
                  ....*....|....*....|....*....|..
gi 269973882  279 S----WPNLVFgLTSGGIFVCTTTINCFIFIP 306
Cdd:pfam00003 216 NkgkgTWDPVA-LAIFAILASGWVLLGLYFIP 246
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
392-709 3.64e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  392 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 469
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  470 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 549
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  550 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 627
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  628 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 699
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 269973882  700 RAPSPAAPCL 709
Cdd:PHA03307  443 SPPPPPGRVR 452
 
Name Accession Description Interval E-value
7tmC_GPR156 cd15292
orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; ...
48-313 3.12e-156

orphan GPR156, member of the class C family of seven-transmembrane G protein-coupled receptors; This subgroup represents orphan GPR156 that is closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320419  Cd Length: 268  Bit Score: 455.74  E-value: 3.12e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  48 VLLGIVWTFLSCGLLLILFFLAFTIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVlvGSSMETLIQTRLSML 127
Cdd:cd15292    1 VLLGVMWTLLSCGILLALFFLAFTIRFRNNRIVKMSSPNLNVVTLLGSILTYTSGFLFGIQEP--GTSMETIFQVRIWLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 128 CIGTSLVFGPILGKSWRLYKVFTQRVPDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGK----DVS 203
Cdd:cd15292   79 CIGTSLVFGPILGKSWRLYRVFTQRVPDKRVIIKDIQLLGLVAGLIFADVLLLLTWVLTDPVQCARSLSAVIKamekGIS 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 204 CTSTSTHFCASRYSDVWIALIWGCKGLLLLYGAYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNL 283
Cdd:cd15292  159 YSVSRMDFCASLYSDLWIILISGFKGSLLLYGTYLAGLTSNVSSPPVNQSLTIMVGVNLVTLTAGVVFPVTRFLHSWPNL 238
                        250       260       270
                 ....*....|....*....|....*....|
gi 269973882 284 VFGLTSGGIFVCTTTINCFIFIPQLKQWKA 313
Cdd:cd15292  239 VYGTTSGGIFVCTTTINCLIFIPQLKQWKQ 268
7tmC_GABA-B-like cd15047
gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of ...
71-312 7.47e-63

gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism. Also included in this group are orphan receptors, GPR156 and GPR158, which are closely related to the GABA-B receptor family.


Pssm-ID: 320175  Cd Length: 263  Bit Score: 212.04  E-value: 7.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  71 TIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDvlvGSSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFT 150
Cdd:cd15047   24 NIKFRKNRVIKMSSPLFNNLILLGCILCYISVILFGLDD---SKPSSFLCTARPWLLSIGFTLVFGALFAKTWRIYRIFT 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 151 QRVPdKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGKD-VSCTSTSTHFCASRYSDVWIALIWGCKG 229
Cdd:cd15047  101 NKKL-KRIVIKDKQLLKIVGILLLIDIIILILWTIVDPLKPTRVLVLSEISdDVKYEYVVHCCSSSNGIIWLGILLAYKG 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 230 LLLLYGAYLAGLTGHVSSPPVNQS----LTIMVGVNLLVLAAGLLFVVTrylhSWPNLVFGLTSGGIFVCTTTINCFIFI 305
Cdd:cd15047  180 LLLLFGCFLAWKTRNVDIEEFNESkyigISIYNVLFLSVIGVPLSFVLT----DSPDTSYLIISAAILFCTTATLCLLFV 255

                 ....*..
gi 269973882 306 PQLKQWK 312
Cdd:cd15047  256 PKFWLLK 262
7tmC_GABA-B-R2 cd15294
gamma-aminobutyric acid type B receptor subunit 2, member of the class C family of ...
72-312 5.64e-34

gamma-aminobutyric acid type B receptor subunit 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320421  Cd Length: 270  Bit Score: 131.40  E-value: 5.64e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  72 IHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVLVG-SSMETLIQTRLSMLCIGTSLVFGPILGKSWRLYKVFT 150
Cdd:cd15294   25 IKFRNHRYIKMSSPYMNNLIILGCMLTYASVILLGLDGSLVSeKTFETLCTARTWILCVGFTLAFGAMFSKTWRVHSIFT 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 151 QrVPDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQ-CLQILSVT----GKDVSCTSTSTHfCASRYSDVWIALIW 225
Cdd:cd15294  105 N-VKLNKKAIKDYKLFIIVGVLLLIDICILITWQIVDPFYrTVKELEPEpdpaGDDILIRPELEY-CESTHMTIFLGIIY 182
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 226 GCKGLLLLYGAYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAGLLFVVTRYLHSWPNLVFGLTSGGIFVCTTTINCFIFI 305
Cdd:cd15294  183 AYKGLLMVFGCFLAWETRNVSIPALNDSKYIGMSVYNVVIMCVIGAAVSFILRDQPNVQFCIISLFIIFCTTITLCLVFV 262

                 ....*..
gi 269973882 306 PQLKQWK 312
Cdd:cd15294  263 PKLIELR 269
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
44-306 3.10e-28

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 113.91  E-value: 3.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882   44 SLSPVLLGIVWTFLSCGLLLILFFLAFTIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQdvlvgssMETLIQTR 123
Cdd:pfam00003   2 DLSAPWGIVLEALAALGILLTLVLLVVFLLHRKTPIVKASNRSLSFLLLLGLLLLFLLAFLFIGK-------PTVTCALR 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  124 LSMLCIGTSLVFGPILGKSWRLYKVFTQRVPdkrvIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGKDVS 203
Cdd:pfam00003  75 RFLFGVGFTLCFSCLLAKTFRLVLIFRRRKP----GPRGWQLLLLALGLLLVQVIILTEWLIDPPFPEKDNLSEGKIILE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  204 CT-STSTHFCASRYSDVWIALIWGC----KgllllygaylagltGHVSSPPVNQSLTIMVGVnLLVLAAGLLFVVTRYLH 278
Cdd:pfam00003 151 CEgSTSIAFLDFVLAYVGLLLLAGFllafK--------------TRKLPDNFNEAKFITFSM-LLSVLIWVAFIPMYLYG 215
                         250       260       270
                  ....*....|....*....|....*....|..
gi 269973882  279 S----WPNLVFgLTSGGIFVCTTTINCFIFIP 306
Cdd:pfam00003 216 NkgkgTWDPVA-LAIFAILASGWVLLGLYFIP 246
7tmC_GABA-B-R1 cd15291
gamma-aminobutyric acid type B receptor subunit 1, member of the class C family of ...
75-310 4.75e-18

gamma-aminobutyric acid type B receptor subunit 1, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320418  Cd Length: 274  Bit Score: 85.08  E-value: 4.75e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  75 RKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVLVGSSMETLI-QTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRV 153
Cdd:cd15291   28 RHRRYIQLSQPHCNNVMLVGCILCLASVFLLGLDGRHVSRSHFPLVcQARLWLLCLGFTLAYGSMFTKVWRVHRLTTKKK 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 154 PDK--RVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQ------CLQILSVTGKDVSCTSTSTHfCASRYSDVWIALIW 225
Cdd:cd15291  108 EKKetRKTLEPWKLYAVVGILLVVDVIILAIWQIVDPLHrtieefPLEEPKDTDEDVKILPQLEH-CSSKKQNTWLGIVY 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 226 GCKGLLLLYGAYLAGLTGHVSSPPVNQSLtiMVGV---NLLVLAagLLFV-VTRYLHSWPNLVFGLTSGGIFVCTTTINC 301
Cdd:cd15291  187 GYKGLLLLFGLFLAYETRNVKVEKINDSR--FVGMsiyNVVVLC--LITApVTMIISSQQDASFAFVSLAILFSSYITLV 262

                 ....*....
gi 269973882 302 FIFIPQLKQ 310
Cdd:cd15291  263 LIFVPKIRE 271
7tm_classC_mGluR-like cd13953
metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled ...
41-211 3.89e-14

metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled receptors superfamily; The class C GPCRs consist of glutamate receptors (mGluR1-8), the extracellular calcium-sensing receptors (caSR), the gamma-amino-butyric acid type B receptors (GABA-B), the vomeronasal type-2 pheromone receptors (V2R), the type 1 taste receptors (TAS1R), and the promiscuous L-alpha-amino acid receptor (GPRC6A), as well as several orphan receptors. Structurally, these receptors are typically composed of a large extracellular domain containing a Venus flytrap module which possesses the orthosteric agonist-binding site, a cysteine-rich domain (CRD) with the exception of GABA-B receptors, and the seven-transmembrane domains responsible for G protein activation. Moreover, the Venus flytrap module shows high structural homology with bacterial periplasmic amino acid-binding proteins, which serve as primary receptors in transport of a variety of soluble substrates such as amino acids and polysaccharides, among many others. The class C GPCRs exist as either homo- or heterodimers, which are essential for their function. The GABA-B1 and GABA-B2 receptors form a heterodimer via interactions between the N-terminal Venus flytrap modules and the C-terminal coiled-coiled domains. On the other hand, heterodimeric CaSRs and Tas1Rs and homodimeric mGluRs utilize Venus flytrap interactions and intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD), which can also acts as a molecular link to mediate the signal between the Venus flytrap and the 7TMs. Furthermore, members of the class C GPCRs bind a variety of endogenous ligands, ranging from amino acids, ions, to pheromones and sugar molecules, and play important roles in many physiological processes such as synaptic transmission, calcium homeostasis, and the sensation of sweet and umami tastes.


Pssm-ID: 320091 [Multi-domain]  Cd Length: 251  Bit Score: 73.04  E-value: 3.89e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  41 TISSLSPVLLGIVWTFLscglllilfflaftIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFgiqdvlVGSSMETLI 120
Cdd:cd13953    8 VLAALGLLLTIFIWVVF--------------IRYRNTPVVKASNRELSYLLLFGILLCFLLAFLF------LLPPSDVLC 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 121 QTRLSMLCIGTSLVFGPILGKSWRLYKVFTQRVP--DKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVT 198
Cdd:cd13953   68 GLRRFLFGLSFTLVFSTLLVKTNRIYRIFKSGLRssLRPKLLSNKSQLLLVLFLLLVQVAILIVWLILDPPKVEKVIDSD 147
                        170
                 ....*....|....*
gi 269973882 199 GKDV--SCTSTSTHF 211
Cdd:cd13953  148 NKVVelCCSTGNIGL 162
7tmC_GPR158-like cd15293
orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G ...
71-308 1.67e-08

orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group includes orphan receptors GPR158, GPR158-like (also called GPR179) and similar proteins. These orphan receptors are closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320420  Cd Length: 252  Bit Score: 56.07  E-value: 1.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  71 TIHCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFGIQdvlvgSSMET---LIQTRLsmlcIGTSLVFGPILGKSWRLYK 147
Cdd:cd15293   24 VFRFRKVKVIKAASPILLELILFGALLLYFPVFILYFE-----PSVFRcilRPWFRH----LGFAIVYGALILKTYRILV 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 148 VFTQRVpDKRVIIKDLQLLGLVAALLMADVILLMTWVLTDPIQCLQILSVTGKDVsctstSTHFC-ASRYSDVW-----I 221
Cdd:cd15293   95 VFRSRS-ARRVHLTDRDLLKRLGLIVLVVLGYLAAWTAVNPPNVEVGLTLTSSGL-----KFNVCsLDWWDYVMaiaelL 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882 222 ALIWG---CKGllllygaylagltghVSSPP--VNQSLTIMVGV-NLLVLAAGL---LFVVTRYLHswPNLVFGLTSGGI 292
Cdd:cd15293  169 FLLWGvylCYA---------------VRKAPsaFNESRYISLAIyNELLLSVIFniiRFFLLPSLH--PDLLFLLFFLHT 231
                        250
                 ....*....|....*.
gi 269973882 293 FVCTTTINCFIFIPQL 308
Cdd:cd15293  232 QLTVTVTLLLIFGPKF 247
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
392-709 3.64e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  392 PEGAAPPASSPNKDVqAVASVHTLAAAQGPSGHLSDFQNDPGMAARDSQCTSGPSSYAQSLEGP--GKDSSFSPGKEEKI 469
Cdd:PHA03307  160 AAVASDAASSRQAAL-PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPapGRSAADDAGASSSD 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  470 SDSKDfsdhlDSGCSQKPWTEQSLGPERGDQVPMNPSQSLLPERGGSDPQRQRhlenSEEPPERRSRVSSVIREKlqevl 549
Cdd:PHA03307  239 SSSSE-----SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPG----- 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  550 qdlglGPEASLSTAPSCHQ--QTWKNSAAFSPQKmPLSKELGFSPymvrrrraaqrarSHFPGSAPSSVGHRANRTVPGA 627
Cdd:PHA03307  305 -----SGPAPSSPRASSSSssSRESSSSSTSSSS-ESSRGAAVSP-------------GPSPSRSPSPSRPPPPADPSSP 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  628 HSRlhvQNGDSPSLAPQTTDSRVRRPSSRK-PSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQP----SGS---G 699
Cdd:PHA03307  366 RKR---PRPSRAPSSPAASAGRPTRRRARAaVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPlltpSGEpwpG 442
                         330
                  ....*....|
gi 269973882  700 RAPSPAAPCL 709
Cdd:PHA03307  443 SPPPPPGRVR 452
7tmC_mGluR4 cd15452
metabotropic glutamate receptor 4 in group 3, member of the class C family of ...
79-192 3.11e-03

metabotropic glutamate receptor 4 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320568 [Multi-domain]  Cd Length: 327  Bit Score: 40.73  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973882  79 IVKMSSPNLNIVTLLGSCLTYSSAYLFGIQDVLVGSSMetliqtRLSMLCIGTSLVFGPILGKSWRLYKVFTQ---RVPD 155
Cdd:cd15452   32 IVKASGRELSYVLLTGIFLCYATTFLMIAEPDLGTCSL------RRIFLGLGMSISYAALLTKTNRIYRIFEQgkrSVSA 105
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 269973882 156 KRVIIKDLQLLgLVAALLMADVILLMTWVLTDPIQCL 192
Cdd:cd15452  106 PRFISPASQLV-ITFSLISLQLLGVCVWFLVDPSHSV 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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