NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|300796845|ref|NP_001180203|]
View 

uncharacterized protein LOC210321 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NlpC super family cl43273
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-77 9.79e-05

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG0791:

Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 9.79e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 300796845  43 EPQPGDLFLFKLQTPKAQwcgaHVGVYCGQGEIIH 77
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH 190
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-77 9.79e-05

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 9.79e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 300796845  43 EPQPGDLFLFKLQTPKAQwcgaHVGVYCGQGEIIH 77
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH 190
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 43-90 1.46e-03

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 36.49  E-value: 1.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 300796845   43 EPQPGDLFLFKlqtpkAQWCGAHVGVYCGQGEIIHfegrTSNQNGVQT 90
Cdd:pfam00877  50 EPQRGDLVFFG-----TGKGISHVGIYLGNGQMLH----ASTGGGVSI 88
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-77 9.79e-05

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 9.79e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 300796845  43 EPQPGDLFLFKLQTPKAQwcgaHVGVYCGQGEIIH 77
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH 190
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 43-90 1.46e-03

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 36.49  E-value: 1.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 300796845   43 EPQPGDLFLFKlqtpkAQWCGAHVGVYCGQGEIIHfegrTSNQNGVQT 90
Cdd:pfam00877  50 EPQRGDLVFFG-----TGKGISHVGIYLGNGQMLH----ASTGGGVSI 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH