|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-781 |
1.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 218 FEGLQQQFLG-ANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLresQKLFQN 296
Cdd:TIGR02168 346 LEELKEELESlEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 297 GKEREIQL-EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVL 375
Cdd:TIGR02168 423 IEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 376 SLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQ 455
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIK 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 456 AQKAHAMSANMNKALQEELTELKDEISLYESAAKL------GIHPSDSEG---ELNIELTESY--VDLGIKKVNWK---- 520
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDnalELAKKLRPGYriVTLDGDLVRPGgvit 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 521 ---KSKVTSIVQEEDPNEELSKD-----EFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKK------ 586
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKieeleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaev 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 587 -------DEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLcnqmrqm 659
Cdd:TIGR02168 743 eqleeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL------- 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 660 vQDFDHDKQEAVDRCERTyqqhHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQ-----LRSELDKLNKEVTAVQECYL 734
Cdd:TIGR02168 816 -NEEAANLRERLESLERR----IAATERRLEDLEEQIEELSEDIESLAAEIEELEelieeLESELEALLNERASLEEALA 890
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 303304991 735 EVCREKDNLELTLRKTTEKEQQTQEKIKE--KLIQQLEKEWQsKLDQTI 781
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEElrEKLAQLELRLE-GLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-1013 |
1.36e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 251 QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKER--EIQ-----LEAQIKALETQIQALKVNEE 323
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieELQkelyaLANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 324 QMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVK 403
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDEL--AEELAELEEKLEEL--------KEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 404 QLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISL 483
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 484 YESAAKLgihpsdsegelnIELTESYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKDEFILKLKAE-----VQRL----- 553
Cdd:TIGR02168 463 LEELREE------------LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgiLGVLselis 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 554 ------------LGSNSmkRHLVSQLQNDLKDChkkIEDLHQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDI 621
Cdd:TIGR02168 531 vdegyeaaieaaLGGRL--QAVVVENLNAAKKA---IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 622 LLLKNEIQV----------------LQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEA- 684
Cdd:TIGR02168 606 DLVKFDPKLrkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEk 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 685 ---MKTQIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKtTEKEQQTQEKI 761
Cdd:TIGR02168 686 ieeLEEKIAELEKALAELRKEL--EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ-LSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 762 KEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAImIEEQKCTIQQNLEQEKDIAIKGAMKKLEI 841
Cdd:TIGR02168 763 IEELEERLEEA-EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 842 ELELKHCENITKQVEIAVQnahqrwlgelpELAEYQalvkAEQKKWEEQHEVSVNKRISfaVSEAKEKWKSELENMRKNI 921
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAA-----------EIEELE----ELIEELESELEALLNERAS--LEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 922 lpgKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNK-------------EKQEEIHRIQEQNEQDYRQFLDDHRN 988
Cdd:TIGR02168 904 ---RELESKRSELRRELEELREKL-AQLELRLEGLEVRIDNlqerlseeysltlEEAEALENKIEDDEEEARRRLKRLEN 979
|
810 820 830
....*....|....*....|....*....|.
gi 303304991 989 KINE---VLAAAKEDFMKQK---TELLLQKE 1013
Cdd:TIGR02168 980 KIKElgpVNLAAIEEYEELKeryDFLTAQKE 1010
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
295-1045 |
2.28e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 295 QNGKEREIQLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQqlvdLHHSESLQRAREQHESIVMGLTKKYEE-- 372
Cdd:PTZ00121 1053 DGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGK----AEEAKKTETGKAEEARKAEEAKKKAEDar 1128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 373 QVLSLQKNLDA--TVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEesQKQCAHLLQSGSVQEVAQLQ 450
Cdd:PTZ00121 1129 KAEEARKAEDArkAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEELRKAEDARKAEAAR 1206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 451 FQLQQAQKAHAMSANMNKALQE--ELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIKKVNWKKSKVTSIV 528
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 529 QEEDPNEELSKDEFI-----LKLKAEVQRLlgsnsmkrhlVSQLQNDLKDCHKKIEDLHQvKKDEKSIEVETKTDTSEKP 603
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKkkadeAKKKAEEAKK----------ADEAKKKAEEAKKKADAAKK-KAEEAKKAAEAAKAEAEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 604 KNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlcNQMRQMVQDFDHDKQEAVDRCERTYQQHH- 682
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED--KKKADELKKAAAAKKKADEAKKKAEEKKKa 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 683 EAMKTQIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAE--EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 763 EKLIQQLEKewQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKDiaiKGAMKKLEIe 842
Cdd:PTZ00121 1512 ADEAKKAEE--AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK---NMALRKAEE- 1585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 843 lelkhcenitkqveiaVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVsvnkrisfavsEAKEKWKSELENMRKNIL 922
Cdd:PTZ00121 1586 ----------------AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKKVEQL 1638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 923 PGKELEEKihslQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFL--DDHRNKINEVLAAAKED 1000
Cdd:PTZ00121 1639 KKKEAEEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE 1714
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 303304991 1001 fmKQKTELLLQKETELQTCLDQSRREwtMQEAKRIQLEIYQYEED 1045
Cdd:PTZ00121 1715 --KKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEE 1755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
239-481 |
1.57e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 239 IQLQVLN-KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQA 317
Cdd:COG1196 227 AELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 318 LKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESivmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 397
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEEL--EEELEELEEELEE----AEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 398 LKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKA-LQEELTE 476
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAeLEEEEEA 460
|
....*
gi 303304991 477 LKDEI 481
Cdd:COG1196 461 LLELL 465
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
664-1236 |
5.78e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 5.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 664 DHDKQEAVDRCERTYQQHHEAMKTQiresllAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNL 743
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 744 ELT--LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDqtikAMKKKTLDcGSQTDQVTTSDVISKKEMAIMIEEQKCTIQ 821
Cdd:PTZ00121 1296 KKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 822 QNLEQEKDIAiKGAMKKLEielELKHCENITKQVEIAVQNAHqrwlgELPELAEYQALVKAEQKKWEEQHEVSVNKRISF 901
Cdd:PTZ00121 1371 KKKEEAKKKA-DAAKKKAE---EKKKADEAKKKAEEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 902 AVSEAKEKwKSELENMRKNILPGKELEEKIHSlqKELELKNEEVPvviRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQ 981
Cdd:PTZ00121 1442 EAKKADEA-KKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 982 FLDDHRNKINEVLAAAKedfmKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsdTQKEH 1061
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL------RKAEE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1062 ISDSEDKQLLEIMSTCSS-KWMSVQYFEKLKGCIQKAFQdtlpllVENADPEWKKrnMAELSKDSASQGTGQGDPGPAAG 1140
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEE------LKKAEEEKKK--VEQLKKKEAEEKKKAEELKKAEE 1657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1141 HHAQPLALQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKC----CRHLQHLERKHKAVVEKIGEENNK 1216
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKK-------AEEDEKKAAEALKKEAEEAKkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
570 580
....*....|....*....|
gi 303304991 1217 VVEELIEENNDMKNKLEELQ 1236
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAK 1750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-999 |
1.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREI-QLEAQIKALETQIQALKVNEEQ 324
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 325 MIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQ 404
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEEL--EREIEEERKRRDKL--------TEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 405 LERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQsgsvqevaqlqfqlqQAQKAHAMSANMNkALQEELTELKDEISLY 484
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD---------------LNAAIAGIEAKIN-ELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 485 ESAAKLGIHPSDSEGELNIELTESYVDLgikkvnwkkskvtsivqeedpNEELSKDEF-ILKLKAEVQRLLGSNSMKRHL 563
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRV---------------------EKELSKLQReLAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 564 VSQLQNDLKDCHKKIEDLHQVkkdeksievetktdtseKPKNQLWPESSTSD----VVRDDILLLKNEIQVLQQQNQElk 639
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAQLGSV-----------------GERYATAIEVAAGNrlnnVVVEDDAVAKEAIELLKRRKAG-- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 640 etegklRNTNQDLcNQMRQMVQDFDHDKQE-----AVD--RCERTYQ-------------QHHEAMKT---QIRESLLAK 696
Cdd:TIGR02169 574 ------RATFLPL-NKMRDERRDLSILSEDgvigfAVDlvEFDPKYEpafkyvfgdtlvvEDIEAARRlmgKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 697 HALEK-------------QQLFEAYERTHLQ-LRSELDKLNKEVTAVQEcylEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:TIGR02169 647 ELFEKsgamtggsraprgGILFSRSEPAELQrLRERLEGLKRELSSLQS---ELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 763 EklIQQLEKEwQSKLDQTIKAMKKKTldcgSQTDQVTTSDVISKKEMAIMIEEQkctiqqnleQEKDIAIKGAMKKLEIE 842
Cdd:TIGR02169 724 E--IEQLEQE-EEKLKERLEELEEDL----SSLEQEIENVKSELKELEARIEEL---------EEDLHKLEEALNDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 843 LELKHCENITKQVEiAVQNAHQRWLGELPELAeyQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNIl 922
Cdd:TIGR02169 788 LSHSRIPEIQAELS-KLEEEVSRIEARLREIE--QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK- 863
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 303304991 923 pgKELEEKIHSLQKELELKNEEvpvviRAELAKARSEWNKEKQEEIHRIQEQNEQdyRQFLDDHRNKINEVLAAAKE 999
Cdd:TIGR02169 864 --EELEEELEELEAALRDLESR-----LGDLKKERDELEAQLRELERKIEELEAQ--IEKKRKRLSELKAKLEALEE 931
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
225-440 |
5.79e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 225 FLGANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQL 304
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 305 EAQIKALETQIQALKVNEEQMI----KKSRTTEMAL----ESLKQQLVDLHHSESLQRAREQHesivmgltkkyEEQVLS 376
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLralyRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQ-----------AEELRA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 303304991 377 LQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQS 440
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1024 |
6.58e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 714 QLRSELDKLNKEvTAVQECYLEVCREKDNLELTL-----------RKTTEKEQQTQEKIKEKL---IQQLEKEWQSKLdQ 779
Cdd:TIGR02169 195 EKRQQLERLRRE-REKAERYQALLKEKREYEGYEllkekealerqKEAIERQLASLEEELEKLteeISELEKRLEEIE-Q 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 780 TIKAMKKKTLDCGSQTDQVTTSDViskKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiav 859
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 860 qnahqRWLGELPEL-AEYQALVKAEQKKWEEQHEVSVNKRISF----AVSEAKEKWKSELENMRKNILPGKELEEKIHSL 934
Cdd:TIGR02169 347 -----EERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRdelkDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 935 QKELELKNEevpvVIRAELAKARSEwNKEKQEEIHRIQEQNEQ------DYRQFLDDHRNKINEVlaaakEDFMKQKTEL 1008
Cdd:TIGR02169 422 LADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEQlaadlsKYEQELYDLKEEYDRV-----EKELSKLQRE 491
|
330
....*....|....*.
gi 303304991 1009 LLQKETELQTCLDQSR 1024
Cdd:TIGR02169 492 LAEAEAQARASEERVR 507
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
303-1015 |
9.39e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 9.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 303 QLEAQIKALETQIQALKVNEEQMikksRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL---QK 379
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQGQKV----QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLknrLK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 380 NLDATVTALKEQEDICSRLKDHVKQLERNqeaiKLEKTEIINKLTRSLEESQKQCAHLLQSgsvqEVAQLQFQLQQAQKA 459
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKD----NSELELKMEKVFQGTDEQLNDLYHNHQR----TVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 460 HAMSANMNKALQEELTELKDEISLYESAAK----------LGIHPSDSEGELNIELTESYVDLGIKKVNW-------KKS 522
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADrhqehirardSLIQSLATRLELDGFERGPFSERQIKNFHTlvierqeDEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 523 KVTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSIEVETKTDTSEK 602
Cdd:TIGR00606 408 KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 603 PKNQlwpESSTSDVVRDDILLLKNE-IQVLQQQNQELKETEGKLRNTnqdlcnQMRQMVQDFDHDKQEAVDRCERTYQQH 681
Cdd:TIGR00606 488 SKAE---KNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 682 HEAMKTQ--------IRESLLAKHALEKQQLFE----------AYERTHLQLRSELDKLNKEVTAVQECYLEVCREKD-- 741
Cdd:TIGR00606 559 SDELTSLlgyfpnkkQLEDWLHSKSKEINQTRDrlaklnkelaSLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDee 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 742 ----NLELTLRKTTEKEQQTQEK--IKEKLIQQLEKEWQS-------------KLDQTIKAMKKKTLDcgSQTDQVTTSD 802
Cdd:TIGR00606 639 sdleRLKEEIEKSSKQRAMLAGAtaVYSQFITQLTDENQSccpvcqrvfqteaELQEFISDLQSKLRL--APDKLKSTES 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 803 VISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKL-----EIELELKHCENITKQVE--IAVQNAHQRWLGELPELAE 875
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLqkvnrDIQRLKNDIEEQETLLGtiMPEEESAKVCLTDVTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 876 YQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKEL--------ELKNEEVPV 947
Cdd:TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIqhlksktnELKSEKLQI 876
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 303304991 948 VIRAELAKARSEWNKEKQEEIhriqeqneQDYRQFLDDHRNKINEvLAAAKEDFMKQKTELLLQKETE 1015
Cdd:TIGR00606 877 GTNLQRRQQFEEQLVELSTEV--------QSLIREIKDAKEQDSP-LETFLEKDQQEKEELISSKETS 935
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
288-730 |
6.04e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 288 RESQKLF-QNGKEREIQLEaQIKALETQIQALKVNEE---QMIKKSRTTEMALESLKQQLVDL-HHSESLQRAREQHESI 362
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 363 vmGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIK-------LEKTEIINKLTRSLEESQKQCA 435
Cdd:COG4717 132 --QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEelleqlsLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 436 HLLQS-GSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLyesAAKLGIHPSDSEGELNIE----LTESYV 510
Cdd:COG4717 210 ELEEElEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL---LALLGLGGSLLSLILTIAgvlfLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 511 DLGIKKVNWKKSKVTSIVQEEDPNEELSKDEfilklKAEVQRLLGSNSMKRHL-VSQLQNDLKDCHKKIEDLHQVKKDEK 589
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELE-----EEELEELLAALGLPPDLsPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 590 SIEVETktdtSEKPKNQLWPESSTSDvvRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQE 669
Cdd:COG4717 362 ELQLEE----LEQEIAALLAEAGVED--EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 303304991 670 AVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQ 730
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-775 |
6.90e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 6.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 240 QLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALK 319
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 320 VNEEQMIKKsrttemaLESLKQQLvdlhhsESLQRAREQHESIVMGLTKKYEE-QVLSLQKNLDATVTALKEQEdicSRL 398
Cdd:TIGR02168 393 LQIASLNNE-------IERLEARL------ERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQ---EEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 399 KDHVKQLERNQEAIKlEKTEIINKLTRSLEESQKQCAhllqsgSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELK 478
Cdd:TIGR02168 457 ERLEEALEELREELE-EAEQALDAAERELAQLQARLD------SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 479 DEISLYESA--AKLGIH------PSDSEGELNIELTE-------SYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD--E 541
Cdd:TIGR02168 530 SVDEGYEAAieAALGGRlqavvvENLNAAKKAIAFLKqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvK 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 542 FILKLKAEVQRLLGSNsmkrHLVSQLQNDLKDCHKKIEDLHQVKKDEKSI---------EVETKTDTSEKpKNQLWPESS 612
Cdd:TIGR02168 610 FDPKLRKALSYLLGGV----LVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILER-RREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 613 TSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHE--------- 683
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteleaeie 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 684 AMKTQIRESLLAKHALEK-----QQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQ 758
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAeieelEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580
....*....|....*....|...
gi 303304991 759 EKIK------EKLIQQLEKEWQS 775
Cdd:TIGR02168 845 EQIEelsediESLAAEIEELEEL 867
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
246-786 |
1.02e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEK-------DGLTLSLRESQKLFQNGK---EREIQLEAQIKALETQI 315
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlniqkniDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQN 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 316 QALKVNEEQMIKKSRTTEMALESLKQQLVDLhhseslqraREQHESIVMGLTKKyeeqvlslQKNLDATVTALKEQEDIC 395
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNTQTQLNQL---------KDEQNKIKKQLSEK--------QKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 396 SRLKDHVKQL--ERNQEAIKLEKTEIINKlTRSLEESQKQCahllqSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEE 473
Cdd:TIGR04523 291 NQLKSEISDLnnQKEQDWNKELKSELKNQ-EKKLEEIQNQI-----SQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 474 LTELKDEISLyesaaklgIHPSDSEGELNIELTESyvdlGIKKVNWKKSKVTSIVQEEDPNEELSKDEFILKLKaEVQRL 553
Cdd:TIGR04523 365 LEEKQNEIEK--------LKKENQSYKQEIKNLES----QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK-EIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 554 LGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEK------SIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNE 627
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEtqlkvlSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 628 IQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQ----EAVDRCERTYQQHHEAMKtQIRESLLAKHAlEKQQ 703
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkkENLEKEIDEKNKEIEELK-QTQKSLKKKQE-EKQE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 704 LFEAYERTHLQLRSEL-------DKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQE---KIKEKL--IQQLEK 771
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKEtikEIRNKWpeIIKKIK 669
|
570
....*....|....*
gi 303304991 772 EWQSKLDQTIKAMKK 786
Cdd:TIGR04523 670 ESKTKIDDIIELMKD 684
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
308-982 |
1.17e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 308 IKALETQIQALKVN----EEQMIKKSRTTEMALESLKQQlvdlhHSESLQRAREQHESIVMGLTKK---YEEQVLSLQKN 380
Cdd:pfam15921 226 LRELDTEISYLKGRifpvEDQLEALKSESQNKIELLLQQ-----HQDRIEQLISEHEVEITGLTEKassARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 381 LDATVTALKEQEDICSRlkdHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCahLLQSGSVQEVAQLQFQLQQAqkah 460
Cdd:pfam15921 301 LEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKIEELEKQL--VLANSELTEARTERDQFSQE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 461 amSANMNKALQEELTELKDEislyesaaklgihpsdsEGELNIELTESyvdlgikKVNWKKSKVTSIV------QEEDPN 534
Cdd:pfam15921 372 --SGNLDDQLQKLLADLHKR-----------------EKELSLEKEQN-------KRLWDRDTGNSITidhlrrELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 535 EELSKDEFILKlkaevqrllgsnSMKRHLVSQLQNDLKDCHKKIEDLHQVKkdEKSIEVETKTDTSEKPKNQLWPESSTs 614
Cdd:pfam15921 426 MEVQRLEALLK------------AMKSECQGQMERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMT- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 615 dvvrddillLKNEIQVLQQQNQELKETEGKLRNTNQDLcNQMRQMV----QDFDHDKQEAVDRceRTYQQHHEAMKTQIR 690
Cdd:pfam15921 491 ---------LESSERTVSDLTASLQEKERAIEATNAEI-TKLRSRVdlklQELQHLKNEGDHL--RNVQTECEALKLQMA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 691 ESLLAKHALEKQ-----QLFEAYERTHLQLRSELDKLNKEVTavqecylevcreKDNLELTLRKTTEKEQQTQEKIKEKL 765
Cdd:pfam15921 559 EKDKVIEILRQQienmtQLVGQHGRTAGAMQVEKAQLEKEIN------------DRRLELQEFKILKDKKDAKIRELEAR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 766 IQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKcTIQQNLeQEKDIAIKGAMKKLEIEL-- 843
Cdd:pfam15921 627 VSDLELE-KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE-VLKRNF-RNKSEEMETTTNKLKMQLks 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 844 ---ELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWE--EQHEVSVNKRISFaVSEAKEKWKSELENM- 917
Cdd:pfam15921 704 aqsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQflEEAMTNANKEKHF-LKEEKNKLSQELSTVa 782
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 303304991 918 -RKNILPGkELeEKIHSLQKELELKNEEVPVVI-RAELAKARSEWNKEKQE-EIHRIQEQNEQDYRQF 982
Cdd:pfam15921 783 tEKNKMAG-EL-EVLRSQERRLKEKVANMEVALdKASLQFAECQDIIQRQEqESVRLKLQHTLDVKEL 848
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
237-950 |
1.84e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQL---------VIIKDEKdgLTLSLRESQKLFQNgkereiqleAQ 307
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssdrILELDQE--LRKAERELSKAEKN---------SL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 308 IKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL------QKNL 381
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 382 DATVTALKEQEDIcsrLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQ----EVAQLQFQLQQAQ 457
Cdd:TIGR00606 576 EDWLHSKSKEINQ---TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSS 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 458 KAHAMSANMNKALQEELTELKDEISlyeSAAKLGIHPSDSEGELNieltESYVDLgikkvnwkKSKVTSIvqeedPNEEL 537
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQ---SCCPVCQRVFQTEAELQ----EFISDL--------QSKLRLA-----PDKLK 712
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 538 SKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSievetKTDTSEKPKNQLWPESSTSDVV 617
Cdd:TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN-----DIEEQETLLGTIMPEEESAKVC 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 618 RDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLC-NQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMK-TQIRESLLA 695
Cdd:TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEqIQHLKSKTN 867
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 696 KHALEKQQLFEAYERTHlQLRSELDKLNKEvtaVQECYLEVCREKDN---LELTLRK-TTEKEQQTQEKIKEKLIQQLE- 770
Cdd:TIGR00606 868 ELKSEKLQIGTNLQRRQ-QFEEQLVELSTE---VQSLIREIKDAKEQdspLETFLEKdQQEKEELISSKETSNKKAQDKv 943
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 771 KEWQSKLDQTIKAMK--KKTLDCGSQTDQVTTSDVISKKEMAI--------MIEEQKCTIQQNLEQEK--DIAIKGAMKK 838
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKdiENKIQDGKDDYLKQKETELNTVNAQLeecekhqeKINEDMRLMRQDIDTQKiqERWLQDNLTL 1023
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 839 LEIELELKHCENITKQVE--------IAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKW 910
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHLkemgqmqvLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 303304991 911 KSELENMRKNILPGKELEEKIHSLQKEL----ELKNEEVPVVIR 950
Cdd:TIGR00606 1104 REMMIVMRTTELVNKDLDIYYKTLDQAImkfhSMKMEEINKIIR 1147
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-1054 |
4.74e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 639 KETEGKLRNTNQDLcnqmrqmvqdfdhdkqeavDRCERTYQQhheaMKTQIREsllakhaLEKQQlfEAYERtHLQLRSE 718
Cdd:COG1196 175 EEAERKLEATEENL-------------------ERLEDILGE----LERQLEP-------LERQA--EKAER-YRELKEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 719 LDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQv 798
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELAR- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 799 TTSDVISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQA 878
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 879 LVKAEQKKW-EEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILpgKELEEKIHSLQKELELKNEEVPVVIRAELAKAR 957
Cdd:COG1196 380 ELEELAEELlEALRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 958 SEWNKEKQEEIHRIQEQNEQDYRQfLDDHRNKINEVLAAAKEdfMKQKTELLLQKETELQTcLDQSRREWtmQEAKRIQL 1037
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAE-LLEELAEAAARLLLLLE--AEADYEGFLEGVKAALL-LAGLRGLA--GAVAVLIG 531
|
410
....*....|....*..
gi 303304991 1038 EIYQYEEDILTVLGVLL 1054
Cdd:COG1196 532 VEAAYEAALEAALAAAL 548
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
247-412 |
6.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 6.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 247 AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE-SQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQM 325
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 326 IKKSRTTEMALESLKQQLVDLHhsESLQRAREQHESIVMGLTKKYEEqvlslqknLDATVTALKEQEDicsRLKDHVKQL 405
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRELR---ELEAEIASL 431
|
....*..
gi 303304991 406 ERNQEAI 412
Cdd:COG4913 432 ERRKSNI 438
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
237-384 |
6.89e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 6.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKD--EKDGLTLSLRESQKLFQNGKEREIQLEAQ------- 307
Cdd:COG3206 206 GLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAqlGSGPDALPELLQSPVIQQLRAQLAELEAElaelsar 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 308 -------IKALETQIQALKVNEEQMIKKSR-TTEMALESLKQQLvdlhhsESLQRAREQHESIVMGLTKKyEEQVLSLQK 379
Cdd:COG3206 286 ytpnhpdVIALRAQIAALRAQLQQEAQRILaSLEAELEALQARE------ASLQAQLAQLEARLAELPEL-EAELRRLER 358
|
....*
gi 303304991 380 NLDAT 384
Cdd:COG3206 359 EVEVA 363
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
345-1007 |
1.17e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 345 DLHHSESLQRAReqheSIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLT 424
Cdd:pfam05483 69 DFENSEGLSRLY----SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENK 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 425 RSLEESQ--KQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELkDEISLYESAAKLGIHPSDSEGELN 502
Cdd:pfam05483 145 DLIKENNatRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAF-EELRVQAENARLEMHFKLKEDHEK 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 503 IE-LTESYVdlgiKKVNWKKSKVTSIVQEEDPNEELSKD-EFIL------------KLKAEVQRLLGSNSMKRHLVSQLQ 568
Cdd:pfam05483 224 IQhLEEEYK----KEINDKEKQVSLLLIQITEKENKMKDlTFLLeesrdkanqleeKTKLQDENLKELIEKKDHLTKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 569 nDLKDCHKKIEDLHQVKKDEKSIEVETKTDTSEKPKNQLW----PESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGK 644
Cdd:pfam05483 300 -DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEelnkAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 645 LRNTNQDLCNQMRQM--VQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQ----LFEAYERT--HLQLR 716
Cdd:pfam05483 379 LKIITMELQKKSSELeeMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQelifLLQAREKEihDLEIQ 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 717 SELDKLNKE--VTAVQECYLEVCREK-DNLELT------LRKTTEKEQQTQEKIKEKLIQQLE----KEWQSKLDQTIKA 783
Cdd:pfam05483 459 LTAIKTSEEhyLKEVEDLKTELEKEKlKNIELTahcdklLLENKELTQEASDMTLELKKHQEDiincKKQEERMLKQIEN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 784 MKKKTLDCGSQTDQVttsdvisKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiavqnAH 863
Cdd:pfam05483 539 LEEKEMNLRDELESV-------REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE-----NK 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 864 QRWLGELPElaEYQALVK--AEQKKWEEQHEVSVNKrISFAVSEAKEKWKSELENMRKNILPGKELEEKIH--------- 932
Cdd:pfam05483 607 NKNIEELHQ--ENKALKKkgSAENKQLNAYEIKVNK-LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakai 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 933 -----SLQKELELKNEEVPVVIRAELAKARSEWNKEKQEE-----IHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFM 1002
Cdd:pfam05483 684 adeavKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERdselgLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
....*
gi 303304991 1003 KQKTE 1007
Cdd:pfam05483 764 IEKEE 768
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
242-439 |
1.79e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 242 QVLNK-AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE--SQKLFQNGKEREIQLEAQIKALETQIQAL 318
Cdd:COG3206 152 AVANAlAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 319 KVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVM---GLTKKYEE---QVLSLQKNLDATVTALK-EQ 391
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAelaELSARYTPnhpDVIALRAQIAALRAQLQqEA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 303304991 392 EDICSRLKDHVKQLERNQEAIKLEKTEI-------------INKLTRSLEESQKQCAHLLQ 439
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLearlaelpeleaeLRRLEREVEVARELYESLLQ 372
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
743-1045 |
2.45e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 743 LELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQ 822
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 823 NLEQEKDIAikgAMKKLEIELELKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSvnKRISFA 902
Cdd:pfam17380 355 QEERKRELE---RIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM--EQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 903 VSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEvpvviraELAKARSEWNKEKQEEiHRIQEQNEQDYRQF 982
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE-------ERKRKKLELEKEKRDR-KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 303304991 983 LDDHRNKINEVLAAAK--EDFMKQKTELLLQKEtELQTCLDQSRREWTMQEAKRIQLEIYQYEED 1045
Cdd:pfam17380 501 LEERKQAMIEEERKRKllEKEMEERQKAIYEEE-RRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
686-1382 |
2.60e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 686 KTQIRESLLAKHALEKQQLFEAYERT----HLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTT-------EKE 754
Cdd:pfam02463 201 KLKEQAKKALEYYQLKEKLELEEEYLlyldYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVlkenkeeEKE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 755 QQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVIsKKEMAIMIEEQKCTIQQNLEQEKDIAIKG 834
Cdd:pfam02463 281 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL-KKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 835 AMKKLEIELELKHCENITKQVEIAVQnahqrwlgelpELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSEL 914
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESER-----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 915 ENMRKNILPGKELEEKIHSLQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVL 994
Cdd:pfam02463 429 LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 995 AAAKEDFMKQKTELLLQKETELQTCL-------DQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDTQKEHISDSED 1067
Cdd:pfam02463 509 LKVLLALIKDGVGGRIISAHGRLGDLgvavenyKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1068 KQLLEIMSTCSSKWMSVQYFEKLKGCIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGPAAGHHAQPLA 1147
Cdd:pfam02463 589 LPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASL 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1148 LQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKccRHLQHLERKHKAVVEKIGEENNKVVEELIEENND 1227
Cdd:pfam02463 669 SELTKELLEIQELQEKAE-------SELAKEEILRRQLEIKKKE--QREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1228 mKNKLEELQTLCKTPPRSLSAGAIENaclpCSGGALEELRGQYIKAVKKIKcDMLRYIQESKERAAEMVKAEVLRERQET 1307
Cdd:pfam02463 740 -LLKQKIDEEEEEEEKSRLKKEEKEE----EKSELSLKEKELAEEREKTEK-LKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 303304991 1308 ARKMRKYYLIcLQQILQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQSKTTQSALPLTSEMLIAVKKSKRN 1382
Cdd:pfam02463 814 AELLEEEQLL-IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
203-1124 |
2.76e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 203 QNNGSPAQEITGSDTFEGLQQQFLGANEN-------SAENMQIIQLQVlnkakERQLENLIEKLNESERQIRYLNHQLVI 275
Cdd:TIGR01612 516 KPDEVPSKNIIGFDIDQNIKAKLYKEIEAglkesyeLAKNWKKLIHEI-----KKELEEENEDSIHLEKEIKDLFDKYLE 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 276 IKDEK---DGLTLSLRESQKLFQNGKE---REIQLEAQIKALETQIQAL-KVNEEQMIKKSRTTEMALESLKQQLVDLHH 348
Cdd:TIGR01612 591 IDDEIiyiNKLKLELKEKIKNISDKNEyikKAIDLKKIIENNNAYIDELaKISPYQVPEHLKNKDKIYSTIKSELSKIYE 670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 349 SEslqrareqhesivmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSRL-KDHVKQLERNQEAIKLEKTEI---INKLT 424
Cdd:TIGR01612 671 DD---------------IDALYNELSSIVKENAIDNTEDKAKLDDLKSKIdKEYDKIQNMETATVELHLSNIenkKNELL 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 425 RSLEESQKQcahlLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLYESAAKLGI---HPSDSEGEL 501
Cdd:TIGR01612 736 DIIVEIKKH----IHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQInidNIKDEDAKQ 811
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 502 NIELTESYvdlgIKKVNWKKSKVTSIVQEEdpneELSKDEFILKLKAEV-------QRLLGSNSMKRHLVSQLQND---- 570
Cdd:TIGR01612 812 NYDKSKEY----IKTISIKEDEIFKIINEM----KFMKDDFLNKVDKFInfennckEKIDSEHEQFAELTNKIKAEisdd 883
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 571 -LKDCHKKIEDLHQ-VKKDEKSIEVETKT-DTSEKPKNQLWPESSTSDVV-----RDDIL--LLKNEIQVLQQQNQELKE 640
Cdd:TIGR01612 884 kLNDYEKKFNDSKSlINEINKSIEEEYQNiNTLKKVDEYIKICENTKESIekfhnKQNILkeILNKNIDTIKESNLIEKS 963
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 641 TEGKLRNTNQDLCNQMRQMVQDFDHDKQEAvdrcertyqQHHEAMK--TQIRESLLAKHALEKQQLFEAYERTHLQLRSE 718
Cdd:TIGR01612 964 YKDKFDNTLIDKINELDKAFKDASLNDYEA---------KNNELIKyfNDLKANLGKNKENMLYHQFDEKEKATNDIEQK 1034
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 719 LDKLNKEVTAVQ-ECYLEVCREKDNLELTLRKTTE-------KEQQTQ----EKIKEKL----IQQLEKEWQSKLDQTIK 782
Cdd:TIGR01612 1035 IEDANKNIPNIEiAIHTSIYNIIDEIEKEIGKNIEllnkeilEEAEINitnfNEIKEKLkhynFDDFGKEENIKYADEIN 1114
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 783 AMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQqNLEQEKDIAIKGAMKKlEIElelKHCENITKQVEIA--VQ 860
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQIN-DLEDVADKAISNDDPE-EIE---KKIENIVTKIDKKknIY 1189
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 861 NAHQRWLGELPELAEYQALVKaEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELEL 940
Cdd:TIGR01612 1190 DEIKKLLNEIAEIEKDKTSLE-EVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGI 1268
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 941 K---NEEVPVV-IRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHR-NKINEVLAAAKEDFMKQKTE--LLLQKE 1013
Cdd:TIGR01612 1269 EmdiKAEMETFnISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDiNDIKKELQKNLLDAQKHNSDinLYLNEI 1348
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1014 TELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsDTQKEHISDSEDKQLLEimsTCSSKWMSVQYFEKLKGC 1093
Cdd:TIGR01612 1349 ANIYNILKLNKIKKIIDEVKEYTKEIEENNKNIKDEL-----DKSEKLIKKIKDDINLE---ECKSKIESTLDDKDIDEC 1420
|
970 980 990
....*....|....*....|....*....|.
gi 303304991 1094 IQKAFQDTLPLLVENADPEWKKRNMAELSKD 1124
Cdd:TIGR01612 1421 IKKIKELKNHILSEESNIDTYFKNADENNEN 1451
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
632-974 |
2.98e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 632 QQQNQELKETEGKLRNTNQDLCNQM--RQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIREsllakhaLEKQQLFEAye 709
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE-------LERIRQEER-- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 710 rthlqlRSELDKLNKEVTAVQecyLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIqqLEKEWQSKLDQTIKAMKKktl 789
Cdd:pfam17380 359 ------KRELERIRQEEIAME---ISRMRELERLQMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQ--- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 790 dcgsqtdqvttsdVISKKEMAIMIEEQKctiqqnLEQEKDIAIKgamKKLEIELELKHcenitkQVEIAVQNAHQRWLGE 869
Cdd:pfam17380 425 -------------IRAEQEEARQREVRR------LEEERAREME---RVRLEEQERQQ------QVERLRQQEEERKRKK 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 870 LPELAEyqalvKAEQKKWEEQHEVSVNKrisfavsEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvvi 949
Cdd:pfam17380 477 LELEKE-----KRDRKRAEEQRRKILEK-------ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------- 536
|
330 340
....*....|....*....|....*.
gi 303304991 950 raelaKARSEWNKEKQ-EEIHRIQEQ 974
Cdd:pfam17380 537 -----EAEEERRKQQEmEERRRIQEQ 557
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
239-420 |
3.23e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.59 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 239 IQLQVLNKAKER------QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQlEAQIKAlE 312
Cdd:PRK00409 499 LPENIIEEAKKLigedkeKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE-EAEKEA-Q 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 313 TQIQALKVNEEQMIKKSRTTE-MALESLK-QQLVDLH---------HSESLQRAREQHESIVMGLTKKYEE-----QVLS 376
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQkGGYASVKaHELIEARkrlnkanekKEKKKKKQKEKQEELKVGDEVKYLSlgqkgEVLS 656
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 303304991 377 LQKNLDATVtalkeQEDICsRLKDHVKQLERNQEAIKLEKTEII 420
Cdd:PRK00409 657 IPDDKEAIV-----QAGIM-KMKVPLSDLEKIQKPKKKKKKKPK 694
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
246-429 |
3.32e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 246 KAKERQLENLIEKLNESERQIRYLnhqlviiKDEKDGLTLSLRESQKLFQ--------NGKEREI-QLEAQIKALET--- 313
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEyswdeidvASAEREIaELEAELERLDAssd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 314 QIQALKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIVMGLTKKYEEQVLSLQKNLDatvtALKEQED 393
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRL--EKELEQAEEELDELQDRLEAAEDLARLELRALLE----ERFAAAL 759
|
170 180 190
....*....|....*....|....*....|....*.
gi 303304991 394 ICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEE 429
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
333-1017 |
4.11e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 333 EMALESLKQQLVDLHhsESLQRAREQHE-------SIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQL 405
Cdd:pfam15921 77 ERVLEEYSHQVKDLQ--RRLNESNELHEkqkfylrQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 406 ernqEAIKLEKTEIINKLTRSLEESQKqcAHLLQSGSVQE-----VAQLQFQLQQAQKAHAMSA----NMNKALQEELTE 476
Cdd:pfam15921 155 ----EAAKCLKEDMLEDSNTQIEQLRK--MMLSHEGVLQEirsilVDFEEASGKKIYEHDSMSTmhfrSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 477 LKDEIS-----LYESAAKLGIHPSDSEGELNIELTE---------SYVDLGIKKVNWKKSKVTS----------IVQEED 532
Cdd:pfam15921 229 LDTEISylkgrIFPVEDQLEALKSESQNKIELLLQQhqdrieqliSEHEVEITGLTEKASSARSqansiqsqleIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 533 PNE------ELSKDE-FILKLKAEV---------------QRLLGSNS------MKRHLVSQLQNDLKD-CHKKIEDLHq 583
Cdd:pfam15921 309 RNQnsmymrQLSDLEsTVSQLRSELreakrmyedkieeleKQLVLANSeltearTERDQFSQESGNLDDqLQKLLADLH- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 584 vkKDEKSIEVETKTDtsekpkNQLWPESSTSDVVRDDillLKNEiqvLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDF 663
Cdd:pfam15921 388 --KREKELSLEKEQN------KRLWDRDTGNSITIDH---LRRE---LDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 664 dHDKQEAVDRCERTYQQhHEAMKTQIREslLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQEcylEVCREKDNL 743
Cdd:pfam15921 454 -QGKNESLEKVSSLTAQ-LESTKEMLRK--VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNA---EITKLRSRV 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 744 ELTLRK----TTEKE--QQTQEKIKEKLIQQLEKEwqsKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQK 817
Cdd:pfam15921 527 DLKLQElqhlKNEGDhlRNVQTECEALKLQMAEKD---KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 818 CTIQQ--NLEQEKDIAIKGAMKKL-EIELE-----------LKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAE 883
Cdd:pfam15921 604 LELQEfkILKDKKDAKIRELEARVsDLELEkvklvnagserLRAVKDI-KQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 884 QKKWEEQHEVSVNKrISFAVSEAkekwKSELENMRkNILPGKELEEKiHSLQkelelkneeVPVVIRAELAKARSEWNKe 963
Cdd:pfam15921 683 FRNKSEEMETTTNK-LKMQLKSA----QSELEQTR-NTLKSMEGSDG-HAMK---------VAMGMQKQITAKRGQIDA- 745
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 303304991 964 KQEEIHRIQE--QNEQDYRQFLDDHRNKINEVLA--AAKEDFMKQKTELLLQKETELQ 1017
Cdd:pfam15921 746 LQSKIQFLEEamTNANKEKHFLKEEKNKLSQELStvATEKNKMAGELEVLRSQERRLK 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
639-1026 |
5.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 639 KETEGKLRNTNQDLcnqmrQMVQDFDHDKQEAVDRCER---TYQQHHEaMKTQIRESLLAKHALEKQQLfeayerthlql 715
Cdd:TIGR02168 175 KETERKLERTRENL-----DRLEDILNELERQLKSLERqaeKAERYKE-LKAELRELELALLVLRLEEL----------- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 716 RSELDKLNKEVTAVQEcylevcrekdnlelTLRKTTEKEQQTQEKikeklIQQLEKEwQSKLDQTIKAMKKKTLDCGSQt 795
Cdd:TIGR02168 238 REELEELQEELKEAEE--------------ELEELTAELQELEEK-----LEELRLE-VSELEEEIEELQKELYALANE- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 796 dqvttsdvISKKEMAIMI-EEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiavqnahqrwlgelPELA 874
Cdd:TIGR02168 297 --------ISRLEQQKQIlRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK--------------EELE 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 875 EYQALVKAEQKKWEEQHevsvnkrisfavsEAKEKWKSELENMRKNIlpgKELEEKIHSLQKELELKNEEVpvvirAELA 954
Cdd:TIGR02168 355 SLEAELEELEAELEELE-------------SRLEELEEQLETLRSKV---AQLELQIASLNNEIERLEARL-----ERLE 413
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 303304991 955 KARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEvlAAAKEDFMKQKTELLLQKETELQTCLDQSRRE 1026
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-1032 |
5.75e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 369 KYEEQVLSLQKNLDATVTALKeqedicsRLKDHVKQLERNQEAIKL--EKTEIINKLTRSLEESQKQcahlLQSGSVQEV 446
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLD-------RLEDILNELERQLKSLERqaEKAERYKELKAELRELELA----LLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 447 AQLQFQLQQAQkahamsanmnKALQEELTELKDEISLYESA---AKLGIHPSDSEGElniELTESYVDLGIKKVNWKKSK 523
Cdd:TIGR02168 238 REELEELQEEL----------KEAEEELEELTAELQELEEKleeLRLEVSELEEEIE---ELQKELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 524 -VTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSIEVEtktdtsek 602
Cdd:TIGR02168 305 qILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE-------- 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 603 PKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHH 682
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 683 EAMktQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVcrekdnleltlrKTTEKEQQTQEKIK 762
Cdd:TIGR02168 457 ERL--EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV------------KALLKNQSGLSGIL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 763 EKLIQQL--EKEWQSKLDqtikamkkktLDCGSQTDQVTTSDVISKKEmAIMIEEQ----KCT-IQQNLEQEKDIAIKGA 835
Cdd:TIGR02168 523 GVLSELIsvDEGYEAAIE----------AALGGRLQAVVVENLNAAKK-AIAFLKQnelgRVTfLPLDSIKGTEIQGNDR 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 836 MKKLEIELELKHCENITKqVEIAVQNAHQRWLGEL---PELAEYQALVKAEQKKW----EEQHEVSVNKRISFAVSEAKE 908
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVK-FDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGYrivtLDGDLVRPGGVITGGSAKTNS 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 909 K---WKSELENMRKNIlpgKELEEKIHSLQKEL-------ELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQD 978
Cdd:TIGR02168 671 SileRRREIEELEEKI---EELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 303304991 979 YRQFLDDHRNKINEVLAAAKEDFMKQKTEL--LLQKETELQTCLDQSRREWTMQEA 1032
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALRE 803
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
216-810 |
1.22e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 216 DTFEGLQQQFLGANENSAE-NMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLF 294
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEaRTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 295 QNGKEREIQLEAQIKALETQIQAlkvneeQMIKKSRTTEMALESLkqqlvdlhhsESLQRAREQHESIVMGLTKKYEEqv 374
Cdd:pfam15921 422 DDRNMEVQRLEALLKAMKSECQG------QMERQMAAIQGKNESL----------EKVSSLTAQLESTKEMLRKVVEE-- 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 375 lslqknLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQkqcaHLLQSGS-VQEVAQLQFQL 453
Cdd:pfam15921 484 ------LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ----HLKNEGDhLRNVQTECEAL 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 454 QQAQKAHAMSANMNKALQEELTELKDEISlyESAAKLGIHPSDSEGELN---IELTEsyvdlgIKKVNWKKSKVTSIVQE 530
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLVGQHG--RTAGAMQVEKAQLEKEINdrrLELQE------FKILKDKKDAKIRELEA 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 531 EDPNEELSKDEFIlklKAEVQRLLGSNSMKRHLvSQLQNDLKDCHKKI----EDLHQVKKD--EKSIEVETktdTSEKPK 604
Cdd:pfam15921 626 RVSDLELEKVKLV---NAGSERLRAVKDIKQER-DQLLNEVKTSRNELnslsEDYEVLKRNfrNKSEEMET---TTNKLK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 605 NQLwpESSTSDvvrddilllkneiqvLQQQNQELKETEGKLRNTNQDLCNQMRQMVQdfdhdKQEAVDRCERTYQQHHEA 684
Cdd:pfam15921 699 MQL--KSAQSE---------------LEQTRNTLKSMEGSDGHAMKVAMGMQKQITA-----KRGQIDALQSKIQFLEEA 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 685 MKTQIREsllaKHALEKQQLFEAYERThlQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEK--------EQQ 756
Cdd:pfam15921 757 MTNANKE----KHFLKEEKNKLSQELS--TVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQfaecqdiiQRQ 830
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 303304991 757 TQEKIKEKLIQQLE-KEWQSKLDQTIKAMKKKTLDCGSQTDqvTTSDVISKKEMA 810
Cdd:pfam15921 831 EQESVRLKLQHTLDvKELQGPGYTSNSSMKPRLLQPASFTR--THSNVPSSQSTA 883
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
468-725 |
1.51e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 468 KALQEELTELKDEIS-LYESAAKLgihpsdsEGELNIELTESYVDLGIKKVNWKKSKVTSIVQEedpneelskdefILKL 546
Cdd:COG4913 613 AALEAELAELEEELAeAEERLEAL-------EAELDALQERREALQRLAEYSWDEIDVASAERE------------IAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 547 KAEVQRLLGSNSMKRHL---VSQLQNDLKDCHKKIEDL-HQVKKDEKSIEV------ETKTDTSEKPKNQLWPESSTSDV 616
Cdd:COG4913 674 EAELERLDASSDDLAALeeqLEELEAELEELEEELDELkGEIGRLEKELEQaeeeldELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 617 VRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCE--RTYQQHHEamktQIRESLL 694
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLEslPEYLALLD----RLEEDGL 829
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 303304991 695 AKHaleKQQLFEA------YERTHL--QLRSE-------LDKLNKE 725
Cdd:COG4913 830 PEY---EERFKELlnensiEFVADLlsKLRRAireikerIDPLNDS 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
468-1039 |
1.64e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 468 KALQEELTELKDEISLYEsaaklgihpsDSEGELNIELTESYVDLGIKKvnwKKSKVTSIVQEEDPNEELSKDefILKLK 547
Cdd:COG1196 216 RELKEELKELEAELLLLK----------LRELEAELEELEAELEELEAE---LEELEAELAELEAELEELRLE--LEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 548 AEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLhQVKKDEKSIEVETKTDTSEKpknqlwpesstsdvVRDDILLLKNE 627
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRREL-EERLEELEEELAELEEELEE--------------LEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 628 IQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEA 707
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 708 YERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQ-------- 779
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeaeadyeg 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 780 ---TIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKD--IAIKGAMKKLEIELELKHCENITKQ 854
Cdd:COG1196 506 fleGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaAAIEYLKAAKAGRATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 855 veiAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRK---------NILPGK 925
Cdd:COG1196 586 ---AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtlegeggSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 926 ELEEKIHSLQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQK 1005
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
570 580 590
....*....|....*....|....*....|....
gi 303304991 1006 TELLLQKETELQTCLDQSRREWTMQEAKRIQLEI 1039
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
237-844 |
2.66e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQL-----VIIKDEKDGLTLS--LRESQKLFQNGKEREIQLEAQIK 309
Cdd:pfam01576 413 QLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegKNIKLSKDVSSLEsqLQDTQELLQEETRQKLNLSTRLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 310 ALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHS--------ESLQRAREQHESIVMGLTKKYEEQVLS----- 376
Cdd:pfam01576 493 QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtlEALEEGKKRLQRELEALTQQLEEKAAAydkle 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 377 -----LQKNLDATVTALKEQEDICSRLKDHVKQL----------------ERNQ-EAIKLEKTEIINKLTRSLEESQKQC 434
Cdd:pfam01576 573 ktknrLQQELDDLLVDLDHQRQLVSNLEKKQKKFdqmlaeekaisaryaeERDRaEAEAREKETRALSLARALEEALEAK 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 435 AHLLQSGSVQEVAQLQFQLQQ----------AQKAHAMSANMNKaLQEELTELKDEISLYESAaklgihpsdsegELNIE 504
Cdd:pfam01576 653 EELERTNKQLRAEMEDLVSSKddvgknvhelERSKRALEQQVEE-MKTQLEELEDELQATEDA------------KLRLE 719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 505 ltesyVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD--EFILKLKAE-VQRLLGSNSMKrhlvsQLQNDLKDCHKKIEDL 581
Cdd:pfam01576 720 -----VNMQALKAQFERDLQARDEQGEEKRRQLVKQvrELEAELEDErKQRAQAVAAKK-----KLELDLKELEAQIDAA 789
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 582 HQVKkdEKSIEVETKTDTSEKpknQLWPESSTSDVVRDDILLLKneiqvlqqqnqelKETEGKLRNTNQDLCnqmrQMVQ 661
Cdd:pfam01576 790 NKGR--EEAVKQLKKLQAQMK---DLQRELEEARASRDEILAQS-------------KESEKKLKNLEAELL----QLQE 847
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 662 DFdhdkqEAVDRCERTYQQHHEAMKTQIRESLLAKHAL--EKQQLfeayERTHLQLRSELDKLNKEVTAVQECYLEVCRE 739
Cdd:pfam01576 848 DL-----AASERARRQAQQERDELADEIASGASGKSALqdEKRRL----EARIAQLEEELEEEQSNTELLNDRLRKSTLQ 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 740 KDNL--ELTLRKTTEKE-----QQTQEKIKE---KLiQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISK--- 806
Cdd:pfam01576 919 VEQLttELAAERSTSQKsesarQQLERQNKElkaKL-QEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANklv 997
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 303304991 807 -------KEMAIMIEEQKctiqQNLEQEKDIAIKGA--MKKLEIELE 844
Cdd:pfam01576 998 rrtekklKEVLLQVEDER----RHADQYKDQAEKGNsrMKQLKRQLE 1040
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-445 |
3.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKlfqngkerEI-QLEAQIKALETQIQALKVNEEQ 324
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQA--------EIdKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 325 MIKKSRTTEMALESLkQQLVDlhhSESLQRA--REQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHV 402
Cdd:COG3883 91 RARALYRSGGSVSYL-DVLLG---SESFSDFldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 303304991 403 KQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQE 445
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
250-429 |
5.48e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 250 RQLENLIEKLNESerqirylNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQMIKKS 329
Cdd:COG4913 671 AELEAELERLDAS-------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 330 RT--TEMALESLKQQLVDLHHSE----------SLQRAREQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 397
Cdd:COG4913 744 RLelRALLEERFAAALGDAVERElrenleeridALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDR 823
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 303304991 398 LKDHvkQLERNQEAIKL--------EKTEIINKLTRSLEE 429
Cdd:COG4913 824 LEED--GLPEYEERFKEllnensieFVADLLSKLRRAIRE 861
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
248-433 |
5.77e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 41.47 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 248 KERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQAL--------- 318
Cdd:pfam15818 220 KEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKENNQTLerdnelqre 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 319 --KVNEEQMIKKSRTTEMALESLKQQLVDLHHS-----ESLQRAREQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQ 391
Cdd:pfam15818 300 kvKENEEKFLNLQNEHEKALGTWKKHVEELNGEineikNELSSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNEN 379
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 303304991 392 EDICS-RLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQ 433
Cdd:pfam15818 380 SEMSTeKSENLIIQKYNSEQEIREENTKSFCSDTEYRETEKKK 422
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
903-1038 |
6.02e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 903 VSEAKEKwksELENMRKNILPGKELEEKIHSLQKELELKNEevpvviraeLAKARSEWNKEKQEEIHRIQEQNE--QDYR 980
Cdd:PRK12704 28 IAEAKIK---EAEEEAKRILEEAKKEAEAIKKEALLEAKEE---------IHKLRNEFEKELRERRNELQKLEKrlLQKE 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 303304991 981 QFLDDHRNKIN--EVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE------WTMQEAKRIQLE 1038
Cdd:PRK12704 96 ENLDRKLELLEkrEEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisgLTAEEAKEILLE 161
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
240-355 |
6.43e-03 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 41.15 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 240 QLQVLNKAKERQLENLIEKLNES----ERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQngkereiqleaqikALETQI 315
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEELksshEEELEKLKQEVQKLEDEKKFLLNELRSLSATSP--------------ASSQSH 70
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 303304991 316 QALKVNEEQM-IKKSRTTEMALESLKQQLVDLHHSESLQRA 355
Cdd:pfam09798 71 ETDTDDSSSVsLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
755-1026 |
7.81e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 755 QQTQEKI--KEKLIQQLEKEWQsKLDQTIKAMKKktldcgsQTDQVttsdviskkemaimiEEQKCTIQQNLE-QEKDIA 831
Cdd:COG4913 606 FDNRAKLaaLEAELAELEEELA-EAEERLEALEA-------ELDAL---------------QERREALQRLAEySWDEID 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 832 IKGAMKKL-EIELELKHCEN-------ITKQVEiAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEvSVNKRISFAV 903
Cdd:COG4913 663 VASAEREIaELEAELERLDAssddlaaLEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 904 SEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNKEKQEEIHRIQEQNEqDYRQFL 983
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELERAMRAFNREWPAETADLDADLE-SLPEYL 818
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 303304991 984 DDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE 1026
Cdd:COG4913 819 ALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIRE 861
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
235-422 |
7.94e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 235 NMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQ 314
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 315 IQaLKVNEEQMIKKSRTTEMA-LESLKQQLVDLHHS-ESLQRAREQHESIVMGLTKKYEeqvlSLQKNLDATVTALKEQE 392
Cdd:TIGR04523 421 KE-LLEKEIERLKETIIKNNSeIKDLTNQDSVKELIiKNLDNTRESLETQLKVLSRSIN----KIKQNLEQKQKELKSKE 495
|
170 180 190
....*....|....*....|....*....|
gi 303304991 393 DICSRLKDHVKQLERNQEAIKLEKTEIINK 422
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEK 525
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
588-790 |
7.96e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 588 EKSIEVETKTDTSEKPKNQLWPESSTS-----------DVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlCNQM 656
Cdd:PLN02939 191 QEKIHVEILEEQLEKLRNELLIRGATEglcvhslskelDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKE-RSLL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 657 RQMVQDFDH---DKQEAVDRCErTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHlQLRSELDKLnKEVTAVQECY 733
Cdd:PLN02939 270 DASLRELESkfiVAQEDVSKLS-PLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKL-EASLKEANVS 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 303304991 734 LEVCREKDNLELTLRKTTEKEQQTQEKIKE--KLIQQLEKEWQSKLDQTIKAMKKKTLD 790
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQASDHEIHSyiQLYQESIKEFQDTLSKLKEESKKRSLE 405
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
217-889 |
8.16e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 217 TFEGLQQQFLGANENSAENMQIIQLQVLNK---AKERQLENLIEKLNESERQIRYLNHQlviikdekdgltlslresqkl 293
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEelrAQEAVLEETQERINRARKAAPLAAHI--------------------- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 294 fqngkEREIQLEAQIKALETQIQalkvneEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIvmglTKKYEEQ 373
Cdd:TIGR00618 300 -----KAVTQIEQQAQRIHTELQ------SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI----RDAHEVA 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 374 vlslqknldatvTALKEQEDICSRLKDHVKQLERNQEAIKlEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQL 453
Cdd:TIGR00618 365 ------------TSIREISCQQHTLTQHIHTLQQQKTTLT-QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 454 QQAQKAHAMsANMNKALQEELTELKDEISLYESAAKlgihpSDSEGELNIELTESYvdlgIKKVNWKKSKVTSIVQEEDP 533
Cdd:TIGR00618 432 QQELQQRYA-ELCAAAITCTAQCEKLEKIHLQESAQ-----SLKEREQQLQTKEQI----HLQETRKKAVVLARLLELQE 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 534 NEELSKdEFILKLKAEVQRLLGSNSMKRHL------VSQLQNDLKDC-HKKIEDLHQVKKDEKSIEVEtktDTSEKPKNQ 606
Cdd:TIGR00618 502 EPCPLC-GSCIHPNPARQDIDNPGPLTRRMqrgeqtYAQLETSEEDVyHQLTSERKQRASLKEQMQEI---QQSFSILTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 607 LWPESStsdvvrDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlcnQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMK 686
Cdd:TIGR00618 578 CDNRSK------EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 687 TQIRESLLAK----HALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQEcYLEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:TIGR00618 649 HALQLTLTQErvreHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE-MLAQCQTLLRELETHIEEYDREFNEIENAS 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 763 EKLIQQLEKEwQSKLDQTIKAMKK--KTLDCGSQTDQvttsdviSKKEMAIMIEEQKCTIQQNLEQEKDIAIKG------ 834
Cdd:TIGR00618 728 SSLGSDLAAR-EDALNQSLKELMHqaRTVLKARTEAH-------FNNNEEVTAALQTGAELSHLAAEIQFFNRLreedth 799
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 303304991 835 --AMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEE 889
Cdd:TIGR00618 800 llKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
305-487 |
8.72e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 305 EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKyEEQVLSLQKNlDAT 384
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEL-EAELERLDAS-SDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 385 VTALKEQEDicsRLKDHVKQLERNQEAIKLEKTEIINKLTRsLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSA 464
Cdd:COG4913 687 LAALEEQLE---ELEAELEELEEELDELKGEIGRLEKELEQ-AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*.
gi 303304991 465 NMN---KALQEELTELKDEISLYESA 487
Cdd:COG4913 763 VERelrENLEERIDALRARLNRAEEE 788
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
738-1386 |
8.79e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 8.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 738 REKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCgsqtdqvttsdviskKEMAIMIEEQK 817
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE---------------EEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 818 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGElpELAEYQALVKAEQKKWEEQHEVSVNK 897
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE--EELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 898 risfavseAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvviraelaKARSEWNKEKQEEIHRIQEQNEQ 977
Cdd:pfam02463 312 --------DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKEL-------------EIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 978 DYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDT 1057
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1058 QKEHISDSEDKQLLEIMSTCSSKWMSVQYFEKLkgcIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGP 1137
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQ---EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1138 AAGHHAQPLALQ--------ATEAEADKKKVLEIKDLCCGHCFQELEKAKQECQDLKGKLEKCCRHLQHLERKHKAVVEK 1209
Cdd:pfam02463 528 HGRLGDLGVAVEnykvaistAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1210 IGEENNKVVEELIEENNDMKNKLEELQTLCKTPPRSLSAGAIENaclpcSGGALEELRGQYIKAVKKIKCDMLRYIQESK 1289
Cdd:pfam02463 608 LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG-----VSLEEGLAEKSEVKASLSELTKELLEIQELQ 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 303304991 1290 ERAAEMVKAEVLRERQETARKMRKYYLICLQQiLQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQ--SKTTQSALP 1367
Cdd:pfam02463 683 EKAESELAKEEILRRQLEIKKKEQREKEELKK-LKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeeEKSRLKKEE 761
|
650
....*....|....*....
gi 303304991 1368 LTSEMLIAVKKSKRNDVNQ 1386
Cdd:pfam02463 762 KEEEKSELSLKEKELAEER 780
|
|
| |
