NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|315583009|ref|NP_001186841|]
View 

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Danio rerio]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
67-214 1.85e-112

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 319.23  E-value: 1.85e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIW 214
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
67-214 1.85e-112

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 319.23  E-value: 1.85e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIW 214
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 68-217 5.13e-108

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 306.72  E-value: 5.13e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  68 ITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIWYRK 217
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 67-208 3.90e-104

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 296.57  E-value: 3.90e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009   67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 145
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 315583009  146 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKRE 208
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
93-201 5.14e-37

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 125.39  E-value: 5.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009   93 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGY 163
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 315583009  164 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGTLQL 201
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
67-214 1.85e-112

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 319.23  E-value: 1.85e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIW 214
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 68-217 5.13e-108

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 306.72  E-value: 5.13e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  68 ITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIWYRK 217
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 67-208 3.90e-104

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 296.57  E-value: 3.90e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009   67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 145
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 315583009  146 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKRE 208
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
68-216 1.13e-72

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 221.40  E-value: 1.13e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  68 ITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:PRK14819  18 LTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMP 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKI-WYR 216
Cdd:PRK14819  98 EPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGRVrWYG 168
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
68-209 1.49e-70

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 212.85  E-value: 1.49e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  68 ITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:PRK14816  28 VGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMA 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 315583009 147 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREK 209
Cdd:PRK14816 108 DPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 66-209 2.48e-70

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 212.12  E-value: 2.48e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  66 YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 145
Cdd:PRK14818  16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQM 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 315583009 146 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREK 209
Cdd:PRK14818  96 PEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEP 159
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 62-209 1.84e-69

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 210.51  E-value: 1.84e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  62 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKV 141
Cdd:PRK14813   9 SNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRL 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 315583009 142 YDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREK 209
Cdd:PRK14813  89 YEQMPEPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQ 157
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
67-210 4.61e-67

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 219.65  E-value: 4.61e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 145
Cdd:PRK13292   8 LLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSILRLYEQM 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 315583009 146 PEPRYVISMGSCANGGGYYHYsYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKR 210
Cdd:PRK13292  88 AEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREER 151
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 63-217 6.87e-67

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 203.60  E-value: 6.87e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  63 KGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQADVMIVAGTLTNKMAPALRKV 141
Cdd:PRK14815  15 EGNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRI 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 315583009 142 YDQMPEPRYVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMKIWYRK 217
Cdd:PRK14815  95 YDQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAARTLFKK 169
ndhK CHL00023
NADH dehydrogenase subunit K
 67-208 6.20e-66

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 202.63  E-value: 6.20e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  67 VITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMP 146
Cdd:CHL00023  18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMP 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 315583009 147 EPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKRE 208
Cdd:CHL00023  98 EPKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
69-209 4.17e-56

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 176.17  E-value: 4.17e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  69 TKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG---VVFraSPRQADVMIVAGTLTNKMAPALRKVYDQM 145
Cdd:PRK14820  21 TSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGserPSF--SPRQADMLMVMGTIAKKMAPVLKQVYLQM 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 315583009 146 PEPRYVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREK 209
Cdd:PRK14820  99 AEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNES 161
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 50-208 1.95e-55

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 174.83  E-value: 1.95e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  50 TALAAKPASAVSSKgeYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRA-SPRQADVMIVAG 128
Cdd:PRK14814   4 SDLSKKPGQALGDM--FQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009 129 TLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKRE 208
Cdd:PRK14814  82 TITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQ 160
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
77-208 5.24e-53

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 168.60  E-value: 5.24e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  77 WARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVF-RASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 155
Cdd:PRK14817  31 WARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVNCKQAPILQRVYEQMADPKWVMAFG 110

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315583009 156 SCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKRE 208
Cdd:PRK14817 111 VCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQ 162
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
93-210 8.99e-53

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 166.12  E-value: 8.99e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  93 CAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 172
Cdd:COG3260   20 CEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFRDSYAVLG 99

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 315583009 173 GCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKR 210
Cdd:COG3260  100 GVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
93-201 5.14e-37

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 125.39  E-value: 5.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009   93 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGY 163
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 315583009  164 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGTLQL 201
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
87-196 4.09e-09

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 54.93  E-value: 4.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315583009  87 TFGLACCavEMMHMA-----------APRYDMDRFGVV--FRASPRQADVMIVAGTLTNK----MAPALRKVydqmpePR 149
Cdd:COG1941    8 TYWLAGC--SGCQLSfldlderlldlLELVEIVYFPEAsdVKEIPEPVDVALVEGSIRNEeneeRLKEIREK------SK 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 315583009 150 YVISMGSCANGGG----------------YYHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALLY 196
Cdd:COG1941   80 ILVALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQILE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH