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Conserved domains on  [gi|324120956|ref|NP_001191214|]
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mucin-1 isoform 9 precursor [Homo sapiens]

Protein Classification

SEA domain-containing protein( domain architecture ID 10640846)

SEA domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 254-372 1.79e-42

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


:

Pssm-ID: 214554  Cd Length: 121  Bit Score: 146.40  E-value: 1.79e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   254 PQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGSVVVQLTLAFRE 329
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKTdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 324120956   330 GTINVHDVETQFNQYKTEAAsrYNLTISDVSVSDVPFPFSAQS 372
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQAA--YSLKITNVNVVDVLDPDSADS 121
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 79-175 6.09e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 6.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   79 TLAPATEPASGSAATwgqDVTSVPVTRPALGSTtPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGV 158
Cdd:PHA03247 2736 PAAPAPPAVPAGPAT---PGGPARPARPPTTAG-PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

                          90
                  ....*....|....*..
gi 324120956  159 TSAPDNRPALGSTAPPV 175
Cdd:PHA03247 2812 LAPAAALPPAASPAGPL 2828
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 23-258 9.52e-04

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 9.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   23 GSGHASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPaTEPASGSAATWGQDVTSVP 102
Cdd:PHA03307  100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP-AAVASDAASSRQAALPLSS 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  103 VTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPG-STAPPAHGVTSAPDNRPALGSTAPPvHNVTSA 181
Cdd:PHA03307  179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSESSGCGWGP-ENECPL 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  182 SGSASGSASTLV---HNGTSARATTTPASKSTPFSIPS-----HHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTS 253
Cdd:PHA03307  258 PRPAPITLPTRIweaSGWNGPSSRPGPASSSSSPRERSpspspSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337


                  ....*
gi 324120956  254 PQLST 258
Cdd:PHA03307  338 GAAVS 342
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 254-372 1.79e-42

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 146.40  E-value: 1.79e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   254 PQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGSVVVQLTLAFRE 329
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKTdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 324120956   330 GTINVHDVETQFNQYKTEAAsrYNLTISDVSVSDVPFPFSAQS 372
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQAA--YSLKITNVNVVDVLDPDSADS 121
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
 262-328 1.48e-10

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 58.02  E-value: 1.48e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 324120956  262 FFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQ----GGFLGLSNIKFRP--GSVVVQLTLAFR 328
Cdd:pfam01390   2 YYTGSFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNsslrKQYIKSHVLRLRPdgGSVVVDVVLVFR 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 79-175 6.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 6.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   79 TLAPATEPASGSAATwgqDVTSVPVTRPALGSTtPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGV 158
Cdd:PHA03247 2736 PAAPAPPAVPAGPAT---PGGPARPARPPTTAG-PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

                          90
                  ....*....|....*..
gi 324120956  159 TSAPDNRPALGSTAPPV 175
Cdd:PHA03247 2812 LAPAAALPPAASPAGPL 2828
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 90-260 9.29e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 9.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   90 SAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPD-NRPAL 168
Cdd:pfam05109 460 APASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNaTSPTL 539

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  169 GSTAPpvhnvtsasgsaSGSASTLVHNGTSAR-ATTTPASKSTpfsIPSHHSDTPTTLASHSTKTDASSTHHSTVPPLTS 247
Cdd:pfam05109 540 GKTSP------------TSAVTTPTPNATSPTpAVTTPTPNAT---IPTLGKTSPTSAVTTPTPNATSPTVGETSPQANT 604

                         170
                  ....*....|...
gi 324120956  248 SNHSTSPQLSTGV 260
Cdd:pfam05109 605 TNHTLGGTSSTPV 617
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 23-258 9.52e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 9.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   23 GSGHASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPaTEPASGSAATWGQDVTSVP 102
Cdd:PHA03307  100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP-AAVASDAASSRQAALPLSS 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  103 VTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPG-STAPPAHGVTSAPDNRPALGSTAPPvHNVTSA 181
Cdd:PHA03307  179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSESSGCGWGP-ENECPL 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  182 SGSASGSASTLV---HNGTSARATTTPASKSTPFSIPS-----HHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTS 253
Cdd:PHA03307  258 PRPAPITLPTRIweaSGWNGPSSRPGPASSSSSPRERSpspspSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337


                  ....*
gi 324120956  254 PQLST 258
Cdd:PHA03307  338 GAAVS 342
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
58-250 4.78e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 39.35  E-value: 4.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  58 SSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHG 137
Cdd:COG3469   20 VTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVAT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956 138 VTSAPD---TRPAPGSTAPPAHGVTSAPDNRPALGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSI 214
Cdd:COG3469  100 STASGAntgTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTP 179

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 324120956 215 PSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNH 250
Cdd:COG3469  180 SATTTATATTASGATTPSATTTATTTGPPTPGLPKH 215
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 28-253 5.98e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 39.13  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   28 SSTPGGEkeTSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPA 107
Cdd:pfam05109 475 SPTPAGT--TSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPT 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  108 LGSTTPPAHDVTSAPDNK-PAPGSTAPPAHGVTSAPD-TRPAPGSTAPPAHGVtsapdNRPALGSTAPPVhnVTSASGSA 185
Cdd:pfam05109 553 PNATSPTPAVTTPTPNATiPTLGKTSPTSAVTTPTPNaTSPTVGETSPQANTT-----NHTLGGTSSTPV--VTSPPKNA 625

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 324120956  186 SGSASTLVHNGTSARATTT---PASKSTPFSiPSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTS 253
Cdd:pfam05109 626 TSAVTTGQHNITSSSTSSMslrPSSISETLS-PSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVS 695
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 254-372 1.79e-42

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 146.40  E-value: 1.79e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   254 PQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGSVVVQLTLAFRE 329
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKTdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 324120956   330 GTINVHDVETQFNQYKTEAAsrYNLTISDVSVSDVPFPFSAQS 372
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQAA--YSLKITNVNVVDVLDPDSADS 121
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
 262-328 1.48e-10

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 58.02  E-value: 1.48e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 324120956  262 FFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQ----GGFLGLSNIKFRP--GSVVVQLTLAFR 328
Cdd:pfam01390   2 YYTGSFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNsslrKQYIKSHVLRLRPdgGSVVVDVVLVFR 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 79-175 6.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 6.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   79 TLAPATEPASGSAATwgqDVTSVPVTRPALGSTtPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGV 158
Cdd:PHA03247 2736 PAAPAPPAVPAGPAT---PGGPARPARPPTTAG-PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

                          90
                  ....*....|....*..
gi 324120956  159 TSAPDNRPALGSTAPPV 175
Cdd:PHA03247 2812 LAPAAALPPAASPAGPL 2828
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 90-260 9.29e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 9.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   90 SAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPD-NRPAL 168
Cdd:pfam05109 460 APASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNaTSPTL 539

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  169 GSTAPpvhnvtsasgsaSGSASTLVHNGTSAR-ATTTPASKSTpfsIPSHHSDTPTTLASHSTKTDASSTHHSTVPPLTS 247
Cdd:pfam05109 540 GKTSP------------TSAVTTPTPNATSPTpAVTTPTPNAT---IPTLGKTSPTSAVTTPTPNATSPTVGETSPQANT 604

                         170
                  ....*....|...
gi 324120956  248 SNHSTSPQLSTGV 260
Cdd:pfam05109 605 TNHTLGGTSSTPV 617
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 81-179 1.49e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 44.31  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  81 APATEPASGSAA---TWGQDVTSVPVTRPalgSTTPPAHDVTSAPDN--KPAPGSTAPPAHGVTSAPDTRPAPGSTAPPA 155
Cdd:PLN02217 567 GSTNSTPTGSAAssnTTFSSDSPSTVVAP---STSPPAGHLGSPPATpsKIVSPSTSPPASHLGSPSTTPSSPESSIKVA 643

                         90       100
                 ....*....|....*....|....
gi 324120956 156 HGVTSAPDNRPALGSTAPPVHNVT 179
Cdd:PLN02217 644 STETASPESSIKVASTESSVSMVS 667
PHA03247 PHA03247
large tegument protein UL36; Provisional
 102-254 2.20e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  102 PVTRPALGSTTPPAHDVTSAPDNKPAPGSTAP-------PAHGVTSAPDTRPAPGSTAPPAHGVTSAPDNRPAlgstAPP 174
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSatplppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPA----RPP 2761

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  175 vhnvtsASGSASGSASTLVHNGTSARATTTPASKSTPFSI-----PSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSN 249
Cdd:PHA03247 2762 ------TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESReslpsPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835


                  ....*
gi 324120956  250 HSTSP 254
Cdd:PHA03247 2836 PTAPP 2840
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 86-261 6.04e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 6.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   86 PASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAhgvTSAPDNR 165
Cdd:PHA03307   55 VVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA---SPPPSPA 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  166 PALGSTAPPVHNVTSASGSASGSAStlVHNGTSARATTTPASKSTPFSIPSHHSDTPTTlASHSTKTDASSTHHSTVPPL 245
Cdd:PHA03307  132 PDLSEMLRPVGSPGPPPAASPPAAG--ASPAAVASDAASSRQAALPLSSPEETARAPSS-PPAEPPPSTPPAAASPRPPR 208

                         170
                  ....*....|....*.
gi 324120956  246 TSSNHSTSPQLSTGVS 261
Cdd:PHA03307  209 RSSPISASASSPAPAP 224
PHA03247 PHA03247
large tegument protein UL36; Provisional
 23-224 9.42e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 9.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   23 GSGHASSTPGGEKeTSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQG-QDVTLAPATEPASGSAATWGQDVTSV 101
Cdd:PHA03247 2631 PSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRpRRRAARPTVGSLTSLADPPPPPPTPE 2709

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  102 PVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSA----PDTRPAPGSTA-PPAHGVTSAPDNRPALGSTAPPVH 176
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAtpggPARPARPPTTAgPPAPAPPAAPAAGPPRRLTRPAVA 2789

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 324120956  177 NVTSASGSASGSASTLVHngtsARATTTPASKSTPFSIPSHHSDTPTT 224
Cdd:PHA03247 2790 SLSESRESLPSPWDPADP----PAAVLAPAAALPPAASPAGPLPPPTS 2833
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 23-258 9.52e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 9.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   23 GSGHASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPaTEPASGSAATWGQDVTSVP 102
Cdd:PHA03307  100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP-AAVASDAASSRQAALPLSS 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  103 VTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPG-STAPPAHGVTSAPDNRPALGSTAPPvHNVTSA 181
Cdd:PHA03307  179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSESSGCGWGP-ENECPL 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  182 SGSASGSASTLV---HNGTSARATTTPASKSTPFSIPS-----HHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTS 253
Cdd:PHA03307  258 PRPAPITLPTRIweaSGWNGPSSRPGPASSSSSPRERSpspspSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337


                  ....*
gi 324120956  254 PQLST 258
Cdd:PHA03307  338 GAAVS 342
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
31-227 1.59e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  31 PGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSsttqgqdVTLAPATEPASGSAATWGQDVTSVPVTRPAlgs 110
Cdd:PRK07003 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTA-------VTGAAGAALAPKAAAAAAATRAEAPPAAPA--- 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956 111 tTPPAHDVTSAPDNKPAPGSTAPPAhgvTSAPDTRPAPGSTAPPAhgvTSAPDNRPAlGSTAPPVHNVTSASGSASGSAS 190
Cdd:PRK07003 432 -PPATADRGDDAADGDAPVPAKANA---RASADSRCDERDAQPPA---DSGSASAPA-SDAPPDAAFEPAPRAAAPSAAT 503

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 324120956 191 TLVHNGTSARATTTPASKSTPFSIPSHHSDTPTTLAS 227
Cdd:PRK07003 504 PAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 92-175 1.74e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   92 ATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAhgvtSAPDTRPAPGSTAPPAHGVTSAPDNRPALGST 171
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA----AAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109


                  ....
gi 324120956  172 APPV 175
Cdd:PRK12270  110 AAAV 113
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 73-254 3.33e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 39.90  E-value: 3.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   73 TQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPD-TRPAPGST 151
Cdd:pfam05109 463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNaTSPTLGKT 542

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  152 APPAHGVTSAPDN---RPALGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSDTPTTLASH 228
Cdd:pfam05109 543 SPTSAVTTPTPNAtspTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPP 622

                         170       180
                  ....*....|....*....|....*.
gi 324120956  229 STKTDASSTHHSTVPPLTSSNHSTSP 254
Cdd:pfam05109 623 KNATSAVTTGQHNITSSSTSSMSLRP 648
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 81-175 3.37e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 3.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  81 APATEPASGSAATwgqDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTA---PPAHGVTSAPDTRPAPGSTAPPAHG 157
Cdd:PRK14951 396 QAAAAPAPAAAPA---AAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAvalAPAPPAQAAPETVAIPVRVAPEPAV 472

                         90
                 ....*....|....*...
gi 324120956 158 VTSAPDnrPALGSTAPPV 175
Cdd:PRK14951 473 ASAAPA--PAAAPAAARL 488
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
86-229 3.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 3.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  86 PASGSAATwgqDVTSVPVTRPALGSTTPPAhdvtSAPDNKPAPGSTAPPAHGVTSAPDTR-PAPGSTAPPAHGVTSAPDN 164
Cdd:PRK12323 374 PATAAAAP---VAQPAPAAAAPAAAAPAPA----APPAAPAAAPAAAAAARAVAAAPARRsPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 324120956 165 RPALGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPShHSDTPTTLASHS 229
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP-WEELPPEFASPA 510
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
58-250 4.78e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 39.35  E-value: 4.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  58 SSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHG 137
Cdd:COG3469   20 VTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVAT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956 138 VTSAPD---TRPAPGSTAPPAHGVTSAPDNRPALGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSI 214
Cdd:COG3469  100 STASGAntgTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTP 179

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 324120956 215 PSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNH 250
Cdd:COG3469  180 SATTTATATTASGATTPSATTTATTTGPPTPGLPKH 215
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 77-174 4.90e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 4.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  77 DVTLAPATEPASGSAAtwgqdVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAhGVTSAPDTRPAPGS--TAPP 154
Cdd:PRK14950 357 EALLVPVPAPQPAKPT-----AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP-PVPPRPVAPPVPHTpeSAPK 430

                         90       100
                 ....*....|....*....|
gi 324120956 155 AHGVTSAPDNRPALGSTAPP 174
Cdd:PRK14950 431 LTRAAIPVDEKPKYTPPAPP 450
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 76-179 4.98e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 4.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  76 QDVTLAPATEPASGSAATWGQdVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPpa 155
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQ-ATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA-- 438

                         90       100
                 ....*....|....*....|....
gi 324120956 156 hgvtsaPDNRPALGSTAPPVHNVT 179
Cdd:PRK07994 439 ------KKSEPAAASRARPVNSAL 456
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 72-165 5.18e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.06  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  72 TTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKP-------APGSTAPPAHGVTSAPDT 144
Cdd:COG3266  272 LGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKpvvtetaAPAAPAPEAAAAAAAPAA 351

                         90       100
                 ....*....|....*....|.
gi 324120956 145 RPAPGSTAPPAHGVTSAPDNR 165
Cdd:COG3266  352 PAVAKKLAADEQWLASQPASH 372
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 28-253 5.98e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 39.13  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   28 SSTPGGEkeTSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPA 107
Cdd:pfam05109 475 SPTPAGT--TSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPT 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  108 LGSTTPPAHDVTSAPDNK-PAPGSTAPPAHGVTSAPD-TRPAPGSTAPPAHGVtsapdNRPALGSTAPPVhnVTSASGSA 185
Cdd:pfam05109 553 PNATSPTPAVTTPTPNATiPTLGKTSPTSAVTTPTPNaTSPTVGETSPQANTT-----NHTLGGTSSTPV--VTSPPKNA 625

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 324120956  186 SGSASTLVHNGTSARATTT---PASKSTPFSiPSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTS 253
Cdd:pfam05109 626 TSAVTTGQHNITSSSTSSMslrPSSISETLS-PSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVS 695
PRK04654 PRK04654
sec-independent translocase; Provisional
 77-173 6.91e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 37.87  E-value: 6.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  77 DVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAhdvtsapdnkPAPGSTAPPA-HG-VTSAPDTRPAPGSTAPP 154
Cdd:PRK04654 118 DLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIA----------PAPHQTLVPApHDtIVPAPHAAHLPSAPATP 187

                         90
                 ....*....|....*....
gi 324120956 155 ahgVTSAPDNRPALGSTAP 173
Cdd:PRK04654 188 ---VSVAPVDAGTSASPTP 203
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 24-258 7.66e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 38.79  E-value: 7.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956   24 SGHASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPV 103
Cdd:pfam17823  78 AAHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAA 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  104 TRPALGSTTPPaHDVTSAPDNKPAPGSTAPPAHGVTSAPDT--RPAPGSTAPPAHGVTSAPDN-RPALGSTAPPVHNVTS 180
Cdd:pfam17823 158 PRAAIAAASAP-HAASPAPRTAASSTTAASSTTAASSAPTTaaSSAPATLTPARGISTAATATgHPAAGTALAAVGNSSP 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  181 ASGSASGSASTLVHN--GTSARATTTPASKSTPFSIPSHHSDTPTtlASHSTKTDASSthHSTVPPLTSSNHSTSPQLST 258
Cdd:pfam17823 237 AAGTVTAAVGTVTPAalATLAAAAGTVASAAGTINMGDPHARRLS--PAKHMPSDTMA--RNPAAPMGAQAQGPIIQVST 312
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
80-153 7.78e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.60  E-value: 7.78e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 324120956  80 LAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPA-----PGSTAPPAHGVTSAPDTRPAPGSTAP 153
Cdd:PRK14971 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAavpvnPPSTAPQAVRPAQFKEEKKIPVSKVS 464
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 83-230 9.27e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 38.51  E-value: 9.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  83 ATEPASGSAATWGQDVTSVPVTRPAlgsttpPAHDVTSAPdnkPAPGSTAPPAHGVTSAPDTRPAPGSTAppahGVTSAP 162
Cdd:PRK14959 407 GTAPAAGMTPSSAAPATPAPSAAPS------PRVPWDDAP---PAPPRSGIPPRPAPRMPEASPVPGAPD----SVASAS 473

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 324120956 163 DNRPALGS-TAPPVHNVTSASGSASGSASTLVHNGTSARATTTpASKSTPfsipsHHSDTPTTLASHST 230
Cdd:PRK14959 474 DAPPTLGDpSDTAEHTPSGPRTWDGFLEFCQGRNGQGGRLATV-LRQATP-----EHADGRLRLATMSS 536
PHA03378 PHA03378
EBNA-3B; Provisional
 46-173 9.68e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.51  E-value: 9.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  46 PSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPasGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNK 125
Cdd:PHA03378 651 PHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAP--GTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPA 728

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 324120956 126 PAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDNRPALGSTAP 173
Cdd:PHA03378 729 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 72-175 9.75e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 9.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 324120956  72 TTQGQDVTLAPATEPASGS--AATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPG 149
Cdd:PRK07764 634 AAPAEASAAPAPGVAAPEHhpKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

                         90       100
                 ....*....|....*....|....*.
gi 324120956 150 STAPPAHGVTSAPDNRPALGSTAPPV 175
Cdd:PRK07764 714 ADDPAAQPPQAAQGASAPSPAADDPV 739
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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