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Conserved domains on  [gi|334688822|ref|NP_001229299|]
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calcium channel flower homolog isoform d [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cg6151-P super family cl10918
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 35-101 3.79e-16

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteriztic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


The actual alignment was detected with superfamily member smart01077:

Pssm-ID: 448032  Cd Length: 111  Bit Score: 70.75  E-value: 3.79e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334688822    35 GVLGAVSCAISGLFNCITIHPLNIAAGVWMM-------------------------------------------MAVVPI 71
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIvqgfvllfieapfllkicpfsdkfaefidkfdtnwqraafycgMAIVPI 80

                           90       100       110
                   ....*....|....*....|....*....|.
gi 334688822    72 VISLTLTTLLGNAIAFA-TGVLYGLSALGKK 101
Cdd:smart01077  81 LSCIMLTSLLGVAIFFAiTGVCYGLAALGKQ 111
 
Name Accession Description Interval E-value
Cg6151-P smart01077
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 35-101 3.79e-16

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteristic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 198145  Cd Length: 111  Bit Score: 70.75  E-value: 3.79e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334688822    35 GVLGAVSCAISGLFNCITIHPLNIAAGVWMM-------------------------------------------MAVVPI 71
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIvqgfvllfieapfllkicpfsdkfaefidkfdtnwqraafycgMAIVPI 80

                           90       100       110
                   ....*....|....*....|....*....|.
gi 334688822    72 VISLTLTTLLGNAIAFA-TGVLYGLSALGKK 101
Cdd:smart01077  81 LSCIMLTSLLGVAIFFAiTGVCYGLAALGKQ 111
 
Name Accession Description Interval E-value
Cg6151-P smart01077
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 35-101 3.79e-16

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteristic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 198145  Cd Length: 111  Bit Score: 70.75  E-value: 3.79e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334688822    35 GVLGAVSCAISGLFNCITIHPLNIAAGVWMM-------------------------------------------MAVVPI 71
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIvqgfvllfieapfllkicpfsdkfaefidkfdtnwqraafycgMAIVPI 80

                           90       100       110
                   ....*....|....*....|....*....|.
gi 334688822    72 VISLTLTTLLGNAIAFA-TGVLYGLSALGKK 101
Cdd:smart01077  81 LSCIMLTSLLGVAIFFAiTGVCYGLAALGKQ 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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