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Conserved domains on  [gi|344217741|ref|NP_001230670|]
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uncharacterized protein C2orf42 homolog isoform 2 [Mus musculus]

Protein Classification

zf-tcix domain-containing protein( domain architecture ID 10633130)

zf-tcix domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-tcix pfam14952
Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain ...
16-57 5.98e-19

Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain of prokaryotic topoisomerases, family DNA_ligase_ZBD pfam03119. The function of the eukaryotic proteins it is carried on is not known.


:

Pssm-ID: 464398  Cd Length: 42  Bit Score: 80.15  E-value: 5.98e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 344217741   16 DLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARK 57
Cdd:pfam14952   1 DLGKPTLRGLKKCPKCGTYNGTRGLSCKNKNCDQVFNKLDKK 42
 
Name Accession Description Interval E-value
zf-tcix pfam14952
Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain ...
16-57 5.98e-19

Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain of prokaryotic topoisomerases, family DNA_ligase_ZBD pfam03119. The function of the eukaryotic proteins it is carried on is not known.


Pssm-ID: 464398  Cd Length: 42  Bit Score: 80.15  E-value: 5.98e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 344217741   16 DLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARK 57
Cdd:pfam14952   1 DLGKPTLRGLKKCPKCGTYNGTRGLSCKNKNCDQVFNKLDKK 42
 
Name Accession Description Interval E-value
zf-tcix pfam14952
Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain ...
16-57 5.98e-19

Putative treble-clef, zinc-finger, Zn-binding; This domain resembles the zinc-binding domain of prokaryotic topoisomerases, family DNA_ligase_ZBD pfam03119. The function of the eukaryotic proteins it is carried on is not known.


Pssm-ID: 464398  Cd Length: 42  Bit Score: 80.15  E-value: 5.98e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 344217741   16 DLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARK 57
Cdd:pfam14952   1 DLGKPTLRGLKKCPKCGTYNGTRGLSCKNKNCDQVFNKLDKK 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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