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Conserved domains on  [gi|353523860|ref|NP_001238810|]
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gametogenetin-binding protein 1 isoform b [Mus musculus]

Protein Classification

Ubiquitin_3 domain-containing protein( domain architecture ID 10632672)

Ubiquitin_3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ubiquitin_3 pfam14836
Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin ...
 173-260 2.89e-45

Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin carboxyl-terminal hydrolases and in gametogenetin-binding protein.


:

Pssm-ID: 405518  Cd Length: 88  Bit Score: 146.93  E-value: 2.89e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353523860  173 CPKWCAPRAstYQSPLQKKFRSTDTVGFVESELKKILSV--QREARLWKVGNPEGRELLTQPDITLEEAGMVDGQHLLLE 250
Cdd:pfam14836   1 SFKLCLPGN--LQSPITKKFSKTDTIDFIEKELRKLFSIpkEKETRLWNRYSSNTRELLTDPDITVQEAGLYHGQVLLIE 78

                          90
                  ....*....|
gi 353523860  251 EMDEMGNWPP 260
Cdd:pfam14836  79 EKNEDGNWPR 88
 
Name Accession Description Interval E-value
Ubiquitin_3 pfam14836
Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin ...
 173-260 2.89e-45

Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin carboxyl-terminal hydrolases and in gametogenetin-binding protein.


Pssm-ID: 405518  Cd Length: 88  Bit Score: 146.93  E-value: 2.89e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353523860  173 CPKWCAPRAstYQSPLQKKFRSTDTVGFVESELKKILSV--QREARLWKVGNPEGRELLTQPDITLEEAGMVDGQHLLLE 250
Cdd:pfam14836   1 SFKLCLPGN--LQSPITKKFSKTDTIDFIEKELRKLFSIpkEKETRLWNRYSSNTRELLTDPDITVQEAGLYHGQVLLIE 78

                          90
                  ....*....|
gi 353523860  251 EMDEMGNWPP 260
Cdd:pfam14836  79 EKNEDGNWPR 88
 
Name Accession Description Interval E-value
Ubiquitin_3 pfam14836
Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin ...
 173-260 2.89e-45

Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin carboxyl-terminal hydrolases and in gametogenetin-binding protein.


Pssm-ID: 405518  Cd Length: 88  Bit Score: 146.93  E-value: 2.89e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353523860  173 CPKWCAPRAstYQSPLQKKFRSTDTVGFVESELKKILSV--QREARLWKVGNPEGRELLTQPDITLEEAGMVDGQHLLLE 250
Cdd:pfam14836   1 SFKLCLPGN--LQSPITKKFSKTDTIDFIEKELRKLFSIpkEKETRLWNRYSSNTRELLTDPDITVQEAGLYHGQVLLIE 78

                          90
                  ....*....|
gi 353523860  251 EMDEMGNWPP 260
Cdd:pfam14836  79 EKNEDGNWPR 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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