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Conserved domains on  [gi|380692321|ref|NP_001244088|]
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centrosomal protein of 41 kDa isoform 3 [Homo sapiens]

Protein Classification

rhodanese-like domain-containing protein( domain architecture ID 10456811)

rhodanese-like domain-containing protein may have sulfurtransferase activity if an active site cysteine is present

CATH:  3.40.250.10
PubMed:  12151332|17454295
SCOP:  4000452

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 154-237 4.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


:

Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 69.05  E-value: 4.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321  154 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 232
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*
gi 380692321  233 MLSGG 237
Cdd:pfam00581  83 VLDGG 87
 
Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 154-237 4.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 69.05  E-value: 4.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321  154 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 232
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*
gi 380692321  233 MLSGG 237
Cdd:pfam00581  83 VLDGG 87
RHOD cd00158
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese ...
 154-237 5.69e-15

Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.


Pssm-ID: 238089 [Multi-domain]  Cd Length: 89  Bit Score: 68.87  E-value: 5.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 154 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRtmnpysnDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFM 233
Cdd:cd00158    8 DEDAVLLDVREPEEYAAGHIPGAINIPLSELEE-------RAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYN 80


                 ....
gi 380692321 234 LSGG 237
Cdd:cd00158   81 LEGG 84
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
 157-237 3.71e-11

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 58.62  E-value: 3.71e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321   157 FLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNA-----HGKIIILYDDDERLASQAATTMCERGFENL 231
Cdd:smart00450   5 VVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKrlgldKDKPVVVYCRSGNRSAKAAWLLRELGFKNV 84


                   ....*.
gi 380692321   232 FMLSGG 237
Cdd:smart00450  85 YLLDGG 90
PspE COG0607
Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; ...
 156-237 5.12e-11

Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Rhodanese-related sulfurtransferase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440372 [Multi-domain]  Cd Length: 106  Bit Score: 58.44  E-value: 5.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 156 PFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 235
Cdd:COG0607   19 DAVLLDVREPEEFAAGHIPGAINIPLGELAERLDELPKD---------KPIVVYCASGGRSAQAAALLRRAGYTNVYNLA 89


                 ..
gi 380692321 236 GG 237
Cdd:COG0607   90 GG 91
 
Name Accession Description Interval E-value
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
 154-237 4.55e-15

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 69.05  E-value: 4.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321  154 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKN-AHGKIIILYDDDERLASQAATTMCERGFENLF 232
Cdd:pfam00581   3 DGKVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLElLKDKPIVVYCNSGNRAAAAAALLKALGYKNVY 82


                  ....*
gi 380692321  233 MLSGG 237
Cdd:pfam00581  83 VLDGG 87
RHOD cd00158
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese ...
 154-237 5.69e-15

Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.


Pssm-ID: 238089 [Multi-domain]  Cd Length: 89  Bit Score: 68.87  E-value: 5.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 154 DCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRtmnpysnDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFM 233
Cdd:cd00158    8 DEDAVLLDVREPEEYAAGHIPGAINIPLSELEE-------RAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYN 80


                 ....
gi 380692321 234 LSGG 237
Cdd:cd00158   81 LEGG 84
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
 157-237 3.71e-11

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 58.62  E-value: 3.71e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321   157 FLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNA-----HGKIIILYDDDERLASQAATTMCERGFENL 231
Cdd:smart00450   5 VVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKrlgldKDKPVVVYCRSGNRSAKAAWLLRELGFKNV 84


                   ....*.
gi 380692321   232 FMLSGG 237
Cdd:smart00450  85 YLLDGG 90
PspE COG0607
Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; ...
 156-237 5.12e-11

Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Rhodanese-related sulfurtransferase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440372 [Multi-domain]  Cd Length: 106  Bit Score: 58.44  E-value: 5.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 156 PFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 235
Cdd:COG0607   19 DAVLLDVREPEEFAAGHIPGAINIPLGELAERLDELPKD---------KPIVVYCASGGRSAQAAALLRRAGYTNVYNLA 89


                 ..
gi 380692321 236 GG 237
Cdd:COG0607   90 GG 91
4RHOD_Repeats cd01529
Member of the Rhodanese Homology Domain superfamily. This CD includes putative ...
 159-237 2.09e-06

Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.


Pssm-ID: 238787 [Multi-domain]  Cd Length: 96  Bit Score: 45.36  E-value: 2.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 159 LLDVRDRDSYQQCHIVGAYSYPIATLsrtmnPYSNDILEYKNAHGKI--IILYDDDERLASQAATTMCERGFENLFMLSG 236
Cdd:cd01529   15 LLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQALEAPGRAtrYVLTCDGSLLARFAAQELLALGGKPVALLDG 89


                 .
gi 380692321 237 G 237
Cdd:cd01529   90 G 90
GlpE_ST cd01444
GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain ...
 158-237 2.54e-04

GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.


Pssm-ID: 238721 [Multi-domain]  Cd Length: 96  Bit Score: 39.17  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 158 LLLDVRDRDSYQQC--HIVGAYSYPIATLSRTMNPYSNDileyknahgKIIILYDDDERLASQAATTMCERGFENLFMLS 235
Cdd:cd01444   18 VLLDVRDPASYAALpdHIPGAIHLDEDSLDDWLGDLDRD---------RPVVVYCYHGNSSAQLAQALREAGFTDVRSLA 88


                 ..
gi 380692321 236 GG 237
Cdd:cd01444   89 GG 90
RHOD_PspE2 cd01521
Member of the Rhodanese Homology Domain superfamily. This CD includes the putative ...
 157-236 1.17e-03

Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.


Pssm-ID: 238779 [Multi-domain]  Cd Length: 110  Bit Score: 37.72  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380692321 157 FLLLDVRDRDSYQQCHIVGAYSYPiatlSRTMNPYSNDILEyknaHGKIIILYDDDE--RLASQAATTMCERGFENLFML 234
Cdd:cd01521   26 FVLVDVRSAEAYARGHVPGAINLP----HREICENATAKLD----KEKLFVVYCDGPgcNGATKAALKLAELGFPVKEMI 97


                 ..
gi 380692321 235 SG 236
Cdd:cd01521   98 GG 99
4RHOD_Repeat_3 cd01534
Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative ...
 159-237 1.28e-03

Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.


Pssm-ID: 238792 [Multi-domain]  Cd Length: 95  Bit Score: 37.45  E-value: 1.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 380692321 159 LLDVRDRDSYQQCHIVGAYSYPIATLSRTMNpysndilEYKNAHGKIIILYDDDERLASQAATTMCERGFEnLFMLSGG 237
Cdd:cd01534   19 RFDVRTPEEYEAGHLPGFRHTPGGQLVQETD-------HFAPVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGG 89
Acr2p cd01531
Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain ...
 156-189 5.29e-03

Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.


Pssm-ID: 238789 [Multi-domain]  Cd Length: 113  Bit Score: 35.85  E-value: 5.29e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 380692321 156 PFLLLDVRDRDsYQQCHIVGAYSYPIATLSRTMN 189
Cdd:cd01531   19 PFQVVDVRDED-YAGGHIKGSWHYPSTRFKAQLN 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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