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paired box protein Pax-6 isoform b [Homo sapiens]
paired box protein( domain architecture ID 11265415)
paired box protein similar to mammalian Pax6, a transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas, and Drosophila gooseberry, which is involved in defining the polarity of embryonic segments
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
PAX | smart00351 | Paired Box domain; |
4-142 | 2.93e-80 | |||
Paired Box domain; : Pssm-ID: 128645 [Multi-domain] Cd Length: 125 Bit Score: 243.38 E-value: 2.93e-80
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Homeodomain | pfam00046 | Homeodomain; |
226-281 | 1.32e-27 | |||
Homeodomain; : Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 104.12 E-value: 1.32e-27
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Name | Accession | Description | Interval | E-value | |||
PAX | smart00351 | Paired Box domain; |
4-142 | 2.93e-80 | |||
Paired Box domain; Pssm-ID: 128645 [Multi-domain] Cd Length: 125 Bit Score: 243.38 E-value: 2.93e-80
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PAX | cd00131 | Paired Box domain |
5-145 | 7.06e-79 | |||
Paired Box domain Pssm-ID: 238076 Cd Length: 128 Bit Score: 240.01 E-value: 7.06e-79
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PAX | pfam00292 | 'Paired box' domain; |
4-142 | 1.05e-76 | |||
'Paired box' domain; Pssm-ID: 366005 Cd Length: 125 Bit Score: 234.38 E-value: 1.05e-76
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Homeodomain | pfam00046 | Homeodomain; |
226-281 | 1.32e-27 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 104.12 E-value: 1.32e-27
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
225-280 | 4.30e-24 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 94.24 E-value: 4.30e-24
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
226-283 | 1.04e-23 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 93.46 E-value: 1.04e-23
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
199-302 | 6.81e-12 | |||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 63.22 E-value: 6.81e-12
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Name | Accession | Description | Interval | E-value | |||
PAX | smart00351 | Paired Box domain; |
4-142 | 2.93e-80 | |||
Paired Box domain; Pssm-ID: 128645 [Multi-domain] Cd Length: 125 Bit Score: 243.38 E-value: 2.93e-80
|
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PAX | cd00131 | Paired Box domain |
5-145 | 7.06e-79 | |||
Paired Box domain Pssm-ID: 238076 Cd Length: 128 Bit Score: 240.01 E-value: 7.06e-79
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PAX | pfam00292 | 'Paired box' domain; |
4-142 | 1.05e-76 | |||
'Paired box' domain; Pssm-ID: 366005 Cd Length: 125 Bit Score: 234.38 E-value: 1.05e-76
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Homeodomain | pfam00046 | Homeodomain; |
226-281 | 1.32e-27 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 104.12 E-value: 1.32e-27
|
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
225-280 | 4.30e-24 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 94.24 E-value: 4.30e-24
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
226-283 | 1.04e-23 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 93.46 E-value: 1.04e-23
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
199-302 | 6.81e-12 | |||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 63.22 E-value: 6.81e-12
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
18-89 | 3.02e-03 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 36.51 E-value: 3.02e-03
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HTH_32 | pfam13565 | Homeodomain-like domain; |
67-141 | 4.94e-03 | |||
Homeodomain-like domain; Pssm-ID: 463923 [Multi-domain] Cd Length: 73 Bit Score: 35.74 E-value: 4.94e-03
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Blast search parameters | ||||
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