|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
448-1269 |
1.86e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 448 LNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAAtQLKVQLQEAER-----RWEEvqsyIRKRTAEHEAAQQDLQSKF 522
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELallvlRLEE----LREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 523 VAKENEVQSLHSKLTDTLVSKQQLEQRLmqlmESEQKRVNkeeSLQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvla 602
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEI----EELQKELY---ALANEISRLEQQKQILRERLANLERQL---------- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 603 EELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKI 682
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------LEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDV---VEQMEKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqaeLEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 760 TKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE----------- 828
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavv 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 -KTVQDLKQEIKALKE-EIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDL 900
Cdd:TIGR02168 552 vENLNAAKKAIAFLKQnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 901 QEENESLKAHVQEVAQHNL------KEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFK 974
Cdd:TIGR02168 632 DNALELAKKLRPGYRIVTLdgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 975 SQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1055 NKTSKERQQQVEAVELEAKEVlkklfpkvsvpsnlsygewlhgfekkakecmagtsgsEEVKVLEHKLKEADEMHTLLQL 1134
Cdd:TIGR02168 792 EQLKEELKALREALDELRAEL-------------------------------------TLLNEEAANLRERLESLERRIA 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1135 ECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSE----NKDIENLRREREHLE 1210
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEleelSEELRELESKRSELR 914
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 402478633 1211 MELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQN--------ERQKVAGDLHKAQQSLELIQSKI 1269
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSltleeaeaLENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-1248 |
9.92e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 9.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 458 LVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 534
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 535 KLTDtlvSKQQLEQRLMQLMESEQKRVNKEESLQM---QVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE 611
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 612 KDKQIKQTEDSLASERDRLtskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH-----ELEKMQQSVYVKDDKIRLLE 686
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERL---EARLERLEDRRERLQQEIEELLKKLEEAELKELqaeleELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 687 EQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVS--EQPNKDVVEQMEKCIQEKDE-----KLKTVEELLETGLiqVA 759
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGIlgvlsELISVDEGYEAAI--EA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 760 TKEEELNAIRTENSSLTKE-VQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT-------- 830
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 831 ------VQDLKQEIKALKE--------------------------EIGNVQLEKAQQLS-ITSKVQELQNLLKGKEEQMN 877
Cdd:TIGR02168 622 lggvlvVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEeLEEKIEELEEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 878 TMKAVLEEKEKDLANTGKWLQDLQ----EENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERE 953
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 954 SDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR 1033
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1034 EKNWEAMEAlastekmLQDKVNKTSKERQQQVEAVElEAKEVLKKLfpkvsvpsnlsygewlhgfekkakecmagtsgSE 1113
Cdd:TIGR02168 862 EELEELIEE-------LESELEALLNERASLEEALA-LLRSELEEL--------------------------------SE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1114 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1193
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 402478633 1194 SENKDIE--NLRREREHLEMELEKAEMerSTYVTEVRELKAQLNETLTKLRTEQNER 1248
Cdd:TIGR02168 979 NKIKELGpvNLAAIEEYEELKERYDFL--TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-1081 |
1.33e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 446 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 525
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 526 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 605
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 606 HKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLL 685
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 686 EEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEkLKTVEELLETgLIQVATKEEEL 765
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 766 NAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELlkvankektvQDLKQEIKALKEEI 845
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA----------SDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 846 GNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSA 925
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 926 SQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKlfksqiEQLKQQNYQQASSFPPHEELLKVISERE 1005
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE------ELLEEEALEELPEPPDLEELERELERLE 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1006 KEISGLWN-------ELDSLKDAVEHQRKKNNDLReknweamEALASTEKMLqDKVNKTSKER-QQQVEAVELEAKEVLK 1077
Cdd:COG1196 774 REIEALGPvnllaieEYEELEERYDFLSEQREDLE-------EARETLEEAI-EEIDRETRERfLETFDAVNENFQELFP 845
|
....
gi 402478633 1078 KLFP 1081
Cdd:COG1196 846 RLFG 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-951 |
7.48e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 7.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKK 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 478 NAEQAAtqlkVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESE 557
Cdd:COG1196 313 ELEERL----EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 558 QKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEEL 637
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 638 KDIQNmnfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQheISNKMEEFKILNDQNKALKSEVQKL 717
Cdd:COG1196 469 LEEAA---LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 718 QTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMN 877
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 402478633 878 TMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEI-VLKEKENELKRLEAMLKE 951
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
555-1272 |
1.71e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 555 ESEQKRVNKEESLQmQVQDILE---------QNEALKAQIQQFHSQIAAQTSASVLA---EELHKVIAEKDKQIKQTEDS 622
Cdd:TIGR02168 176 ETERKLERTRENLD-RLEDILNelerqlkslERQAEKAERYKELKAELRELELALLVlrlEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 623 LASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKI 702
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 703 LNDQNKALKSEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDL 782
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 783 KAKQNDQVSFASLVEE--LKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIgnvQLEKAQQLSITS 860
Cdd:TIGR02168 413 EDRRERLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL---DAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 861 KVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE-------SLKAHVQEVAQHNLKEASSASQFEE--- 930
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLKqne 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 931 -------LEIVLKEKENELKRLEaMLKERESDLSSKTQLLQDVQDENKLF-------------KSQIEQLKQQNYQQA-- 988
Cdd:TIGR02168 570 lgrvtflPLDSIKGTEIQGNDRE-ILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddlDNALELAKKLRPGYRiv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 989 -----------SSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKvNKT 1057
Cdd:TIGR02168 649 tldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1058 SKERQQQVEAVELEAKEVLKKLfpkvsvpsNLSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECE 1137
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERI--------AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1138 KYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAE 1217
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 402478633 1218 MERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKA 1272
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
309-1083 |
1.28e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 309 KEKSGVIQDALKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKER---SNVVITRMKDRIGTLEK 385
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 386 EHNVFQNKIHVSYQETQQMQMKFQqvreQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDYARLVNELTEK 465
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 466 TGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskqq 545
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL----- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 546 leQRLMQLMESEQK-RVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQIKQTEDSL 623
Cdd:TIGR02168 523 --GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEGF 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 624 ASERDRLTSKEEELKDiqNMNFLL-----------KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHE 692
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRK--ALSYLLggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRRE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 693 ISNKMEEFKILNDQNKALKSEVQKLQTLvseqpnkdvVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN 772
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKE---------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 773 SSLTKEVQDLKAKqndqvsfaslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEK 852
Cdd:TIGR02168 750 AQLSKELTELEAE----------IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 853 AQQlsiTSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEE----NESLKAHVQEVAQHNLKEASSASQF 928
Cdd:TIGR02168 820 ANL---RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELieelESELEALLNERASLEEALALLRSEL 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 929 EELEIVLKEKENELKRLEAMLKEResdlssKTQLLQDVQDENKLfKSQIEQLKQQNYQQASSfpPHEELLKVISEREKEI 1008
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEEL------REKLAQLELRLEGL-EVRIDNLQERLSEEYSL--TLEEAEALENKIEDDE 967
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1009 SGLWNELDSLKDAVehqrkknNDLREKNWEAMEALASTEKMLQ------DKVNKTSKERQQQVEAVELEAKEVLKKLFPK 1082
Cdd:TIGR02168 968 EEARRRLKRLENKI-------KELGPVNLAAIEEYEELKERYDfltaqkEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040
|
.
gi 402478633 1083 V 1083
Cdd:TIGR02168 1041 V 1041
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-160 |
5.23e-12 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 64.76 E-value: 5.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 29 MKETLYDEVLAKQKREQKLIPTKTDKKKAEKKKNKKK------EIQNGNLHESD----SESVPRDFKLSDALAVEDDQVA 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAALEPE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 402478633 99 PVPlnVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIPGKKVEPVPVTKQPTPPSEAAA 160
Cdd:pfam05104 81 PVP--TPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
727-1323 |
2.32e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 2.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 727 KDVVEQMEKCIQ------EKDEKLKTVEELLETGLIQVATK--EEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEE 798
Cdd:TIGR02168 192 EDILNELERQLKslerqaEKAERYKELKAELRELELALLVLrlEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 799 LKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEI--GNVQLEKAQQLSITSK--VQELQNLLKGKEE 874
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeeLEAQLEELESKLDELAeeLAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 875 QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAhvqEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERES 954
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRS---KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 955 DLSS--KTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL 1032
Cdd:TIGR02168 429 KLEEaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1033 REkNWEAMEALASTEKMLQDKVNKTSKER-------------------QQQVEAVELEAKE--------VLKKLFPKVSV 1085
Cdd:TIGR02168 509 KA-LLKNQSGLSGILGVLSELISVDEGYEaaieaalggrlqavvvenlNAAKKAIAFLKQNelgrvtflPLDSIKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1086 PSNLSYGEWLHGFEKKAKEC-----------------------------------------------------MAGTSGS 1112
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLvkfdpklrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvITGGSAK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1113 EEVKVLEHK--LKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELE 1190
Cdd:TIGR02168 668 TNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1191 RLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNET---LTKLRTEQNERQKVAGDLHKAQQSLELIQS 1267
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeeLKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 402478633 1268 KIVKAAGDTTV-IENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVnQQLTKEKE 1323
Cdd:TIGR02168 828 SLERRIAATERrLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL-EALLNERA 883
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
452-1077 |
6.38e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 6.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 452 RQDYARLVNELTEKTGKLQQEEVQKknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQS 531
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEVRK--AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 532 LHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESlqMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhkviAE 611
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA--RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE-----AK 1315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 612 KDKQIKQTEDSLASERDRLTSKEEELKDIQNMNfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQH 691
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 692 EISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEK---DEKLKTVEElletgliqvATKEEELNAI 768
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEE---------AKKAEEAKKK 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 769 RTEnsslTKEVQDLKAKQNDqvsfASLVEELKKVIHEkdGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEignv 848
Cdd:PTZ00121 1466 AEE----AKKADEAKKKAEE----AKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE---- 1531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 849 QLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKE----ASS 924
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEkkmkAEE 1611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 925 ASQFEELEIVLKE--KENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVIS 1002
Cdd:PTZ00121 1612 AKKAEEAKIKAEElkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 402478633 1003 EREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLK 1077
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
610-1301 |
2.40e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 610 AEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQL 689
Cdd:PTZ00121 1127 ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR 1206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 690 QHEISNKMEEFKILNDQNKAlkSEVQKlqtlvSEQPNKDVVEQmekciqEKDEKLKTVEELLETGLIQVATKEEELNAIR 769
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKA--EAVKK-----AEEAKKDAEEA------KKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 770 TENSSLTKEVQdlKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQ 849
Cdd:PTZ00121 1274 AEEARKADELK--KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 850 LEKAQQLSITSKVQELQNLLKGKEEQ--MNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAhvqEVAQHNLKEASSASQ 927
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEAKkkADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---AAAKKKADEAKKKAE 1428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 928 FEELEIVLKEKENELKRLEAMLKERESdlSSKTQLLQDVQDENKlfKSQIEQLKQQNYQQASSFPPHEELLKVISEREKE 1007
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEE--AKKAEEAKKKAEEAK--KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1008 ISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKT-------------SKERQQQVEAVELEAKE 1074
Cdd:PTZ00121 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAeelkkaeekkkaeEAKKAEEDKNMALRKAE 1584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1075 VLKKLFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVL-AETEGILQKL 1153
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkAEEENKIKAA 1664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1154 QRSVEQEENKWKVKvdeshkTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEM---ELEKAEMERSTYVTEVREL 1230
Cdd:PTZ00121 1665 EEAKKAEEDKKKAE------EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeELKKAEEENKIKAEEAKKE 1738
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402478633 1231 KAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLN 1301
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
379-1084 |
4.08e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 4.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 379 RIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRQDY 455
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgelEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 456 ARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQS---KFVAKENEVQSL 532
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 533 HSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEK 612
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK---LEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 613 DKQIKQTEDSLASERDRLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAAAHELEKMQQSVY---------------- 676
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAE-------AEAQARASEERVRGGRAVEEVLKASIQGVHgtvaqlgsvgeryata 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 677 -------------VKDDKI--RLLEEQLQHEIS-------NKMEEFKILNDQnKALKSEVQKLQTLVSEQPNKD------ 728
Cdd:TIGR02169 541 ievaagnrlnnvvVEDDAVakEAIELLKRRKAGratflplNKMRDERRDLSI-LSEDGVIGFAVDLVEFDPKYEpafkyv 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 729 -----VVEQMEKC---------------IQEKD---------------------EKLKTVEELLETGLIQVATKEEELNA 767
Cdd:TIGR02169 620 fgdtlVVEDIEAArrlmgkyrmvtlegeLFEKSgamtggsraprggilfsrsepAELQRLRERLEGLKRELSSLQSELRR 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 768 IRTENSSLTKEVQDLKAK----QNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:TIGR02169 700 IENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 844 EIGNVQLEKAQQL--SITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlKE 921
Cdd:TIGR02169 780 ALNDLEARLSHSRipEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK---EI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 922 ASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVI 1001
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1002 SEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKM---LQDKVNKTSKER---QQQVEAVELEA 1072
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalePVNMLAIQEYEEVLKRldeLKEKRAKLEEERkaiLERIEEYEKKK 1016
|
810
....*....|..
gi 402478633 1073 KEVLKKLFPKVS 1084
Cdd:TIGR02169 1017 REVFMEAFEAIN 1028
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
356-1069 |
3.40e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.52 E-value: 3.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 356 KQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSN 435
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAY 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 436 TTNQLESKQSaelnklRQDYARLVNELTEKTGKLQQEEvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ 515
Cdd:TIGR00618 245 LTQKREAQEE------QLKKQQLLKQLRARIEELRAQE-----AVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 516 QDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 595
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 596 TSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKlqaLANEQAAAAHELEKMQQSV 675
Cdd:TIGR00618 392 TQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITC---TAQCEKLEKIHLQESAQSL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 676 YVKDDKIRLLEEQLQHEISNKMEEFKILNDQN-------KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVE 748
Cdd:TIGR00618 469 KEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 749 ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNdqvSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVaNKE 828
Cdd:TIGR00618 549 HQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP---NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKL-QPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 KTVQDLKQEIKalkeeignvQLEKAQQLSITSKVQELQNLLkgKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:TIGR00618 625 QDLQDVRLHLQ---------QCSQELALKLTALHALQLTLT--QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 909 AHVQEVAQHNLKeassasqFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQdeNKLFKSQIEQLKQQNYQQA 988
Cdd:TIGR00618 694 YWKEMLAQCQTL-------LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL--KELMHQARTVLKARTEAHF 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 989 SSFP----------PHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEA-LASTEKMLQDKVNKT 1057
Cdd:TIGR00618 765 NNNEevtaalqtgaELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQeEEQFLSRLEEKSATL 844
|
730
....*....|..
gi 402478633 1058 SKERQQQVEAVE 1069
Cdd:TIGR00618 845 GEITHQLLKYEE 856
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
534-1075 |
4.45e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 534 SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 613
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 614 KQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKaEVQKLQALANEQAAAAHELEKMQQSVyvkDDKIRLLEEQLQhEI 693
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK-EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 694 SNKMEEFKILNDQNKALKSEVQKLQTLVSE-QPNKDVVEQMEKCIQE-KDEKLKTVEELLETGLIQVATKEEELNAIRTE 771
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 772 NSSLTKEVQDLK--------AKQNDQVSFASLVEELKKVIHEK--------------DGKIKSVEELLEAELLKVANKEK 829
Cdd:PRK03918 414 IGELKKEIKELKkaieelkkAKGKCPVCGRELTEEHRKELLEEytaelkriekelkeIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 830 TVQDLKQ---EIKALKEEIGNVQLEKAQQLS-ITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:PRK03918 494 ELIKLKElaeQLKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 906 SLKAHVQEVAQHNLKEASsaSQFEELE------IVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQ 979
Cdd:PRK03918 574 ELLKELEELGFESVEELE--ERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 980 LKQQNYQQAssfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNK 1056
Cdd:PRK03918 652 LEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKeelEEREKAKKELEKLEKALERVEEL 726
|
570
....*....|....*....
gi 402478633 1057 TSKERQQQVEAVELEAKEV 1075
Cdd:PRK03918 727 REKVKKYKALLKERALSKV 745
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-1078 |
6.57e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 6.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 435 NTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQE--AERRWEEVQ-SYIRKRTAEH 511
Cdd:TIGR04523 85 KDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKflTEIKKKEKElEKLNNKYNDL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 512 EAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmeseQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQ 591
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNL----KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQE 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 592 IaaqtsasvlaEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANeqaaaahELEKM 671
Cdd:TIGR04523 241 I----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIS-------DLNNQ 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 672 QQSVYVKDDKIRLLE-----EQLQHEISNKMEEFKILNDQNKALKSEVQKLQTlvseqpnkdvveqmekciqEKDEKLKT 746
Cdd:TIGR04523 304 KEQDWNKELKSELKNqekklEEIQNQISQNNKIISQLNEQISQLKKELTNSES-------------------ENSEKQRE 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 747 VEElletgliqvatKEEELNAIRTENSSLTKEVQDLKAKQNDqvsFASLVEELKKVIHEKDGKIKSVEELLEAELLKVAN 826
Cdd:TIGR04523 365 LEE-----------KQNEIEKLKKENQSYKQEIKNLESQIND---LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 827 KEKTVQDLKQEIKALKEEIGNVQLEKAqqlSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENES 906
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIK---NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 907 LKAHVQEVAQhnlKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLssKTQLLQDVQDENklfKSQIEQLKQQNYQ 986
Cdd:TIGR04523 508 LEEKVKDLTK---KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL--KKENLEKEIDEK---NKEIEELKQTQKS 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 987 QASSfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNweamEALASTEKMLQDKVNKTskerQQQVE 1066
Cdd:TIGR04523 580 LKKK---QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN----EKLSSIIKNIKSKKNKL----KQEVK 648
|
650
....*....|..
gi 402478633 1067 AVELEAKEVLKK 1078
Cdd:TIGR04523 649 QIKETIKEIRNK 660
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-981 |
8.20e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 8.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 416 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdyaRLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQE 492
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 493 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQ 570
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE-KDKQIKQTEDSLASERDRLTSKEEELKDIqnmnfllKA 649
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKI-------TA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 650 EVQKLQALANEQAAAAHELEKMQQSVYV------KDDKIRLLEEQLQhEISNKMEEFKILNDQNKALKSEVQKLQTLVSE 723
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 724 QPNKDVVEQMEKCIQEKDEKLKTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAkqndqvsFASLVEELKKV 802
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-------LKKKLAELEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 803 IHEKDGKIKSVEELLEAELLKvankekTVQDLKQEIKALkEEIGNVQLEkaqQLSITSKVQELQNLLKGKEEQmntmkav 882
Cdd:PRK03918 565 LDELEEELAELLKELEELGFE------SVEELEERLKEL-EPFYNEYLE---LKDAEKELEREEKELKKLEEE------- 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 883 LEEKEKDLANTGKWLQDLQEENESLKAHVQEvaqhnlkeassaSQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQL 962
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSE------------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
|
570
....*....|....*....
gi 402478633 963 LQDVQDENKLFKSQIEQLK 981
Cdd:PRK03918 696 LEKLKEELEEREKAKKELE 714
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
628-1231 |
2.05e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 628 DRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILND-Q 706
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 707 NKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETgLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ 786
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQdLKQEIKALKEEIGNVQLEKAQqLSITSKVQELQ 866
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTG-LTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 867 NLLKGKEE------QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKE------ASSASQFEELEIV 934
Cdd:PRK03918 395 ELEKAKEEieeeisKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEeytaelKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 935 LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQqassfppHEELLKVISEREKEISGLWNE 1014
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE-------YEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1015 LdslkdavehqrKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEvLKKLfpkvsvpsnlsYGEW 1094
Cdd:PRK03918 548 L-----------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE-LEPF-----------YNEY 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1095 LhgfekkakecmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWkvkvdeSHKT 1174
Cdd:PRK03918 605 L------------------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEEE 660
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 402478633 1175 IKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELK 1231
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
667-1019 |
2.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 667 ELEKMQQSVYVKDDKIRLLEEQLQheisnKMEEFKILNDQNKALKSEVQKL-QTLVSEQpnkdvVEQMEKCIQEKDEKLK 745
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLE-----RLRREREKAERYQALLKEKREYeGYELLKE-----KEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 746 TVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKakQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVA 825
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 826 NKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitskvqeLQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDK----------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 906 SLKAHV------------------QEVAQHNLKEASSASQFEELEIVLKEKENELKRLE-------AMLKERESDLSSKT 960
Cdd:TIGR02169 396 KLKREInelkreldrlqeelqrlsEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaADLSKYEQELYDLK 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 402478633 961 QLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLK 1019
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
741-1248 |
2.52e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 741 DEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAkqndqvsFASLVEELKKVIHEKDGKIKSVEELLEAE 820
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-------LKEEIEELEKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 821 LLKVANKEKTVQDLKQEIKALKEeignvqlekaqqlsitskvqelqnlLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDL 900
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKE-------------------------LKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 901 QEENESLKAHVQEVaqhnlkeASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQl 980
Cdd:PRK03918 320 EEEINGIEERIKEL-------EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEK- 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 981 KQQNYQQASsfpphEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL----REKNWEAMEALASTEKMLQDKVNK 1056
Cdd:PRK03918 392 ELEELEKAK-----EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1057 TSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYGEWLHGFEKKAKECMAG--TSGSEEVKVLEHKLKEADEMHTLLQL 1134
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEelEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1135 ECEK---YKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEM 1211
Cdd:PRK03918 547 ELEKleeLKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
490 500 510
....*....|....*....|....*....|....*..
gi 402478633 1212 ELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNER 1248
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
593-983 |
5.00e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 593 AAQTSASVLAEElhKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQ 672
Cdd:TIGR02168 665 SAKTNSSILERR--REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 673 QSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSE-----QPNKDVVEQMEKCIQEKDEKLKTV 747
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlkeelKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 748 EELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQND-QVSFASLVEELKKVIHEKDGK---IKSVEELLEAELLK 823
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEElEELIEELESELEALLNERASLeeaLALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 824 VANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANtgkwLQDLQEE 903
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEG-----LEVRIDNLQERLSEEYSLTLEEAEALENKIEDD----EEEARRR 973
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 904 NESLKAHVQEVAQHNLkeaSSASQFEELEivlkekenelKRLEAMLKERESDLSSKTQLLQDVQDENK----LFKSQIEQ 979
Cdd:TIGR02168 974 LKRLENKIKELGPVNL---AAIEEYEELK----------ERYDFLTAQKEDLTEAKETLEEAIEEIDReareRFKDTFDQ 1040
|
....
gi 402478633 980 LKQQ 983
Cdd:TIGR02168 1041 VNEN 1044
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
463-1247 |
6.49e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 6.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 463 TEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLtdtlvs 542
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEA----IERQLASLEEELEKLTEEISELEKRLEEIEQLL------ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 543 kQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKVIAEKDKQIKQTED 621
Cdd:TIGR02169 275 -EELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELED-------------AEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 622 SlaserdrltskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFK 701
Cdd:TIGR02169 341 L-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 702 ILNDQNKALKSEV----QKLQTLVSEQPN-KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLT 776
Cdd:TIGR02169 410 RLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 777 KEVQDLKAK----QNDQVSFASLVEELKKVIhekDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKA 840
Cdd:TIGR02169 490 RELAEAEAQarasEERVRGGRAVEEVLKASI---QGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 841 LKEEignvQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKW-LQD--LQEENESLKAHVQEVAQH 917
Cdd:TIGR02169 567 LKRR----KAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYvFGDtlVVEDIEAARRLMGKYRMV 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 918 NL--------------------KEASSASQFEELEIV---LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFK 974
Cdd:TIGR02169 643 TLegelfeksgamtggsraprgGILFSRSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 975 SQIEQLKQQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLqdkv 1054
Cdd:TIGR02169 723 KEIEQLEQE----------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL---- 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1055 nktskeRQQQVEAVELEAKEVlkklfpkvsvpsnlsygewlhgfekkakecmagtsgSEEVKVLEHKLKEADEMHTLLQL 1134
Cdd:TIGR02169 789 ------SHSRIPEIQAELSKL------------------------------------EEEVSRIEARLREIEQKLNRLTL 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1135 ECEkyksvlaetegILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIE----NLRREREHLE 1210
Cdd:TIGR02169 827 EKE-----------YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLEsrlgDLKKERDELE 895
|
810 820 830
....*....|....*....|....*....|....*..
gi 402478633 1211 MELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNE 1247
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-584 |
1.14e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 326 ELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERsnvvITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQ 405
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 406 MKFQQVREQMEAEIAHLKQENGILRDAVsnttnQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQ 485
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAE-----AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 486 LKVQLQEAERRWEEVqsyiRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEE 565
Cdd:COG1196 419 LEEELEELEEALAEL----EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250
....*....|....*....
gi 402478633 566 SLQMQVQDILEQNEALKAQ 584
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAA 513
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
319-806 |
1.22e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 319 LKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATK------DRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQN 392
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 393 KIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDYARLVN-ELTEKTGKLQQ 471
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELKsELKNQEKKLEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 472 EEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLM 551
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQINDLESKIQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 552 QLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQIKQTEDSLASER 627
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 628 DRLTSKEEELKDIQNMNFLLKAEVQKLQALANeqaaaahELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQN 707
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVK-------DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 708 K--ALKSEVQKLQTLVSEQPN-----KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQ 780
Cdd:TIGR04523 555 KkeNLEKEIDEKNKEIEELKQtqkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
490 500
....*....|....*....|....*.
gi 402478633 781 DLKAKQNDQVSFASLVEELKKVIHEK 806
Cdd:TIGR04523 635 NIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
823-1282 |
1.42e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 823 KVANKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQE 902
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLE----------KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 903 ENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKL--FKSQIEQL 980
Cdd:PRK03918 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 981 KQQNYQQASSFpphEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNW---EAMEALASTEKMLQDKVNKT 1057
Cdd:PRK03918 309 LREIEKRLSRL---EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeEAKAKKEELERLKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1058 SKERQQQVEAVELEAKEVLKKLFPKVSVPSNLsygEWLHGFEKKAKECMAGTSG---------------------SEEVK 1116
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITARIGEL---KKEIKELKKAIEELKKAKGkcpvcgrelteehrkelleeyTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1117 VLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ-----RSVEQEENKWKV-KVDESHKTIKQMQSSFTSSEQELE 1190
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1191 RLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELK----AQLNETLTKLRT---EQNERQKVAGDLHKAQQSLE 1263
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfesvEELEERLKELEPfynEYLELKDAEKELEREEKELK 622
|
490
....*....|....*....
gi 402478633 1264 LIQSKIVKAAGDTTVIENS 1282
Cdd:PRK03918 623 KLEEELDKAFEELAETEKR 641
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-983 |
2.53e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 2.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 357 QLTQEMMTEKERSNVVITRMKDRIGTLEKEHnvfQNKIHVSYQetqQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNT 436
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 437 TNQLESKQSAELNKlRQDYARLVNELtektgklqqeevqkknaEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 516
Cdd:pfam15921 298 QSQLEIIQEQARNQ-NSMYMRQLSDL-----------------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 517 DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKE--------------ESLQMQVQDILEQNEALK 582
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDtgnsitidhlrrelDDRNMEVQRLEALLKAMK 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 583 AQIQ-QFHSQIAAQTSASVLAEELHKVIAekdkQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEvqkLQALANEQ 661
Cdd:pfam15921 440 SECQgQMERQMAAIQGKNESLEKVSSLTA----QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS---LQEKERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 662 AAAAHELEKMQQSVYVKddkirllEEQLQHeisnkmeefkilndqnkaLKSEVQKLQTLVSEqpnkdvVEQMEKCIQEKD 741
Cdd:pfam15921 513 EATNAEITKLRSRVDLK-------LQELQH------------------LKNEGDHLRNVQTE------CEALKLQMAEKD 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 742 EKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDqvsFASLVEELKKVIHEKDGKIKSVEELLEAEL 821
Cdd:pfam15921 562 KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE---FKILKDKKDAKIRELEARVSDLELEKVKLV 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 822 LKVANKEKTVQDLKQEIKALKEEIGNVQLEKAqqlSITSKVQELQNLLKGKEEQM----NTMKAVLEEKEKDLANTGKWL 897
Cdd:pfam15921 639 NAGSERLRAVKDIKQERDQLLNEVKTSRNELN---SLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTRNTL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 898 QDLqeenESLKAHVQEVAQHNLKEASSA-SQFEELEI---VLKEKENELKRLEAMLKERESDLSsktQLLQDVQDENKLF 973
Cdd:pfam15921 716 KSM----EGSDGHAMKVAMGMQKQITAKrGQIDALQSkiqFLEEAMTNANKEKHFLKEEKNKLS---QELSTVATEKNKM 788
|
650
....*....|
gi 402478633 974 KSQIEQLKQQ 983
Cdd:pfam15921 789 AGELEVLRSQ 798
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
396-1063 |
3.91e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 396 VSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRdAVSNTTNQLESKQSaELNKLRQDYARLVNELteKTGKLQQEEVQ 475
Cdd:TIGR00606 207 MELKYLKQYKEKACEIRDQITSKEAQLESSREIVK-SYENELDPLKNRLK-EIEHNLSKIMKLDNEI--KALKSRKKQME 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 476 KKNAEQAATQLKVqLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLME 555
Cdd:TIGR00606 283 KDNSELELKMEKV-FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 556 SEQKRVNKEESLQMQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----ASVLAEELHKVIAEKDKQIKQTED-------S 622
Cdd:TIGR00606 362 HIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAAQLCADLQSKERLKQEQADEIRDekkglgrT 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 623 LASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQS----------VYVKDDKIRLLE------ 686
Cdd:TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsltetlkkevKSLQNEKADLDRklrkld 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 687 ---EQLQHEISNKMEEFKILNDQNKA----LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR00606 522 qemEQLNHHTTTRTQMEMLTKDKMDKdeqiRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 760 TKEEELNAIRTENSSLTKEVQDLKAK-------QNDQVSFASLVEELKKVIHEKdGKIKSVEELLEAELLKVANKEKTVQ 832
Cdd:TIGR00606 602 SLEQNKNHINNELESKEEQLSSYEDKlfdvcgsQDEESDLERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDENQSCC 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 833 DLKQEIKALKEEIGNVQLE-KAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHV 911
Cdd:TIGR00606 681 PVCQRVFQTEAELQEFISDlQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 912 QEVAQH-----------NLKEASS------ASQFEELEIVLKEKENELKRLEAMLKERESDLSSKT-------------- 960
Cdd:TIGR00606 761 QRLKNDieeqetllgtiMPEEESAkvcltdVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQvnqekqekqheldt 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 961 ---------QLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNND 1031
Cdd:TIGR00606 841 vvskielnrKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
730 740 750
....*....|....*....|....*....|..
gi 402478633 1032 LREKNWEAMEALASTEKMLQDKVNKTSKERQQ 1063
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
448-1304 |
5.61e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 448 LNKLRQDYARLVNELTEKTGKLQQ-EEVQKKNAEQAATQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKE 526
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNElHEKQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEqkrvnkeESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASvLAEELH 606
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-------EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS-LGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR--- 683
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsql 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 684 -LLEEQLQHEISNKMEEFKILNDQNKALKSEVQKlqtlvSEQPNKDVVEQMEKciqekdeklktveelletgliQVATKE 762
Cdd:pfam15921 302 eIIQEQARNQNSMYMRQLSDLESTVSQLRSELRE-----AKRMYEDKIEELEK---------------------QLVLAN 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 763 EELNAIRTENSSLTKEVQDLkakqNDQVsfaslvEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALK 842
Cdd:pfam15921 356 SELTEARTERDQFSQESGNL----DDQL------QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 843 EEignvqlekaqqlsitskVQELQNLLKGKEE----QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHN 918
Cdd:pfam15921 426 ME-----------------VQRLEALLKAMKSecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKK 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 919 LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSfpphEELL 998
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK----DKVI 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 999 KVISEREKEISGLWNELDSLKDAVEHQRKK-NNDLREKNWEAMEAlasteKMLQDKVNKTSKERQQQVEAVELEAKEVLk 1077
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQEF-----KILKDKKDAKIRELEARVSDLELEKVKLV- 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1078 klfpkvsvpsnlsygewlhgfekkakecmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSV 1157
Cdd:pfam15921 639 -------------------------------NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1158 EQEE---NKWKVKVDESHKTIKQMQSSFTSSE----QELERLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVREL 1230
Cdd:pfam15921 688 EEMEtttNKLKMQLKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 402478633 1231 KAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI--VKAAGDTTVIENSDVSPETESSEKETMSVSLNQTV 1304
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
797-983 |
1.70e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 797 EELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ-QLSITSKVQELQNLLKG--KE 873
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyRL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 874 EQMNTMKAVL-----EEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlKEASSASQFEELEIVLKEKENELKRLEAM 948
Cdd:COG4942 117 GRQPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAA---LRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190
....*....|....*....|....*....|....*
gi 402478633 949 LKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQ 983
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
442-1038 |
2.22e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 442 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSK 521
Cdd:pfam05483 172 KKYEYEREETRQVYMDLNNNIEKMILAFEELRVQ---AENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 522 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDIleqnealKAQIQQ-FHSQIAAQTSASV 600
Cdd:pfam05483 249 ITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI-------KMSLQRsMSTQKALEEDLQI 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 601 LAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNmnfLLKAEVQKLQALANEQAAAAHELEKmQQSVYVKDD 680
Cdd:pfam05483 322 ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE---LLRTEQQRLEKNEDQLKIITMELQK-KSSELEEMT 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 681 KIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTlvSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVAT 760
Cdd:pfam05483 398 KFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKG--KEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 761 KEEELNAIRTENSSLTKEVQDLKAKQNDQVSFAS-LVEELKKviHEKDgkIKSVEELLEAELLKVANKEKTVQDLKQEIK 839
Cdd:pfam05483 476 LKTELEKEKLKNIELTAHCDKLLLENKELTQEASdMTLELKK--HQED--IINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 840 ALKEEIGNVQLEKAQQLSITSK-VQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK---------- 908
Cdd:pfam05483 552 SVREEFIQKGDEVKCKLDKSEEnARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKkkgsaenkql 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 909 -AHVQEVAQHNLKEASSASQFEELeIVLKEKENELKRL-----------------EAMLKERESDLSSKTQLLQDVQDEN 970
Cdd:pfam05483 632 nAYEIKVNKLELELASAKQKFEEI-IDNYQKEIEDKKIseeklleevekakaiadEAVKLQKEIDKRCQHKIAEMVALME 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 402478633 971 KLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWE 1038
Cdd:pfam05483 711 KHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
305-1315 |
2.40e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.36 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 305 VDLLK--EKSGVIQDALKKSSKGELTtliHQLQEKDKLLAAVKEDAAAT-KDRCKQLTQEMMTEKERSNVVITRMKDRIG 381
Cdd:TIGR01612 623 IDLKKiiENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyEDDIDALYNELSSIVKENAIDNTEDKAKLD 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 382 TLekehnvfQNKIHVSYQETQQMQMkfqqvrEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNE 461
Cdd:TIGR01612 700 DL-------KSKIDKEYDKIQNMET------ATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 462 LTEKTGKLQQEEVQKKNAEQAATQLKVQL-----------QEAERRWEEVQSYIR----------KRTAEHEAAQQDLQS 520
Cdd:TIGR01612 767 LSNKINDYAKEKDELNKYKSKISEIKNHYndqinidnikdEDAKQNYDKSKEYIKtisikedeifKIINEMKFMKDDFLN 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 521 K---FVAKEN----EVQSLHSKLTDtLVSKQQLEQRLMQLMESEqKRVNKEESLqmqvqdILEQNEALKAQIQQFHSQia 593
Cdd:TIGR01612 847 KvdkFINFENnckeKIDSEHEQFAE-LTNKIKAEISDDKLNDYE-KKFNDSKSL------INEINKSIEEEYQNINTL-- 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 594 aqtsasvlaeelhKVIAEKDKQIKQTEDSLASERDRLTSKEEEL----KDIQNMNFLLKAEVQKLQALANEQAAaahELE 669
Cdd:TIGR01612 917 -------------KKVDEYIKICENTKESIEKFHNKQNILKEILnkniDTIKESNLIEKSYKDKFDNTLIDKIN---ELD 980
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 670 KMqqsvyvkddkirLLEEQLQHEISNKMEEFKILNDQNKALKSevQKLQTLVSE-QPNKDVVEQMEKCIQEKDEKLKTVE 748
Cdd:TIGR01612 981 KA------------FKDASLNDYEAKNNELIKYFNDLKANLGK--NKENMLYHQfDEKEKATNDIEQKIEDANKNIPNIE 1046
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 749 ELLETGLIQVAtkEEELNAIRTENSSLTKEVqdLKAKQNDQVSFASLVEELKkvIHEKDGKIKSVEELLEAELLKVANKE 828
Cdd:TIGR01612 1047 IAIHTSIYNII--DEIEKEIGKNIELLNKEI--LEEAEINITNFNEIKEKLK--HYNFDDFGKEENIKYADEINKIKDDI 1120
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 KTV-QDLKQEIKALKE---EIGNVQLEKAQQLSITSKVQE---LQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQ 901
Cdd:TIGR01612 1121 KNLdQKIDHHIKALEEikkKSENYIDEIKAQINDLEDVADkaiSNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIA 1200
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 902 EEnESLKAHVQEVAQHNLKEASSASQF--EELEIVLKEKENELKRLEAML------KERESDLSSKTQLLQDVQDENKLF 973
Cdd:TIGR01612 1201 EI-EKDKTSLEEVKGINLSYGKNLGKLflEKIDEEKKKSEHMIKAMEAYIedldeiKEKSPEIENEMGIEMDIKAEMETF 1279
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 974 ------------------------KSQIEQLKQQNYQQASSFPPHEELLKVISEREK----------EISGLWN--ELDS 1017
Cdd:TIGR01612 1280 nishdddkdhhiiskkhdenisdiREKSLKIIEDFSEESDINDIKKELQKNLLDAQKhnsdinlylnEIANIYNilKLNK 1359
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1018 LKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQD-KVNKTSKERQQQVEAVeLEAKEVlKKLFPKVSVPSN--LSYGEW 1094
Cdd:TIGR01612 1360 IKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKiKDDINLEECKSKIEST-LDDKDI-DECIKKIKELKNhiLSEESN 1437
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1095 LHGFEKKAKEcmagtsGSEEVKVLEHKLKEADEmHTLLQLECEKYKSVlAETEGILQKLQRSVEQEeNKWKVKVDESHKT 1174
Cdd:TIGR01612 1438 IDTYFKNADE------NNENVLLLFKNIEMADN-KSQHILKIKKDNAT-NDHDFNINELKEHIDKS-KGCKDEADKNAKA 1508
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1175 IKQMQSSFTSSEQELERLRSENKDIEnlrrerehLEMELEKAEMERSTYVTEVRELKAQL----NETLTKLRTEQNERQK 1250
Cdd:TIGR01612 1509 IEKNKELFEQYKKDVTELLNKYSALA--------IKNKFAKTKKDSEIIIKEIKDAHKKFileaEKSEQKIKEIKKEKFR 1580
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 402478633 1251 VAGDLHK----------AQQSLELIQSKIVKAAGDTTVIenSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVN 1315
Cdd:TIGR01612 1581 IEDDAAKndksnkaaidIQLSLENFENKFLKISDIKKKI--NDCLKETESIEKKISSFSIDSQDTELKENGDNLN 1653
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1114-1324 |
2.40e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1114 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1193
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1194 SENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAA 1273
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 402478633 1274 GDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1324
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
430-1069 |
5.60e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 5.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 430 RDAVSNTTNQLESKQSAE----LNKLRQdyarlvnELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQsyir 505
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLES-------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE---- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 506 krtaEHEAAQQDLQSKFVAKENEVQSLHSKLTDtlvskqqLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQI 585
Cdd:PRK02224 255 ----TLEAEIEDLRETIAETEREREELAEEVRD-------LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 586 qqfhsqiaaqtsasvlaEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQAlaneqaaaa 665
Cdd:PRK02224 324 -----------------EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE--------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 666 hELEKMQQSVYVKDDKIRLLEEQLqheiSNKMEEFKILNDQNKALKSEVQKLQTLVSEqpnkdvveqMEKCIQEKDEKLK 745
Cdd:PRK02224 378 -AVEDRREEIEELEEEIEELRERF----GDAPVDLGNAEDFLEELREERDELREREAE---------LEATLRTARERVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 746 TVEELLETGL-------IQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDgkiksveelle 818
Cdd:PRK02224 444 EAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE----------- 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 819 aellKVANKEKTVQDLKQEikalKEEIGNVQLEKAQQLSitSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Cdd:PRK02224 513 ----RLEERREDLEELIAE----RRETIEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 899 DLQEENESLKAHVQEVAqhnlKEASSASQFEELeivlKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIE 978
Cdd:PRK02224 583 ELKERIESLERIRTLLA----AIADAEDEIERL----REKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARED 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 979 QLKQQNYQQASSfpphEELLKVISER---EKEISGLWNELDSLkdavEHQRKKNNDLREKNwEAMEALASTEKMLQDKVN 1055
Cdd:PRK02224 655 KERAEEYLEQVE----EKLDELREERddlQAEIGAVENELEEL----EELRERREALENRV-EALEALYDEAEELESMYG 725
|
650
....*....|....*
gi 402478633 1056 KTSKE-RQQQVEAVE 1069
Cdd:PRK02224 726 DLRAElRQRNVETLE 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
920-1275 |
7.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 7.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 920 KEASSASQFEELEIVLKEKENEL-----KRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQnyqqassfppH 994
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----------L 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 995 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEkmlqdkvnktskERQQQVEAVELEAKE 1074
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE------------EELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1075 VLKKLfpkvsvpsnlsygewlhgfekkakecmagtsgSEEVKVLEHKLKEADEmhtLLQLECEKYKSVLAETEGILQKLQ 1154
Cdd:COG1196 345 ELEEA--------------------------------EEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1155 RSVEQEENKwkvkvdesHKTIKQMQSSFTSSEQELERLRSE----NKDIENLRREREHLEMELEKAEMERSTYVTEVREL 1230
Cdd:COG1196 390 EALRAAAEL--------AAQLEELEEAEEALLERLERLEEEleelEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 402478633 1231 KAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGD 1275
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
829-1048 |
8.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 KTVQDLKQEIKALKEEIGNVQLEKAQQlsiTSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAL---KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 909 AHV---QEVAQHNLKEASSASQFEELEIVLKEKENE--------LKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQI 977
Cdd:COG4942 97 AELeaqKEELAELLRALYRLGRQPPLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402478633 978 EQLKQQNYQQassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEK 1048
Cdd:COG4942 177 EALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
897-1267 |
1.37e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 897 LQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAML---------KERESDLSSKTQLLQDVQ 967
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqllplyqelEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 968 DENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISER-EKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALAST 1046
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLAtEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1047 EKML--QDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVP------SNLSYGEWLHGFEKKAKECMAGTSGSEEVKVL 1118
Cdd:COG4717 233 ENELeaAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlfLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1119 EHKLKEADEMHTLLQL---ECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQ-MQSSFTSSEQELERLRS 1194
Cdd:COG4717 313 LEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAlLAEAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 402478633 1195 ENKDIENLRREREHLEMELEKA--EMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQS 1267
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
730-1073 |
1.57e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 730 VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKeVQDLKAKQND--QVSFASLVEELKKVIHEKD 807
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKREyeGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 808 GKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGnvQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKE 887
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK--DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 888 KDLANTGKWLQDLQEENESLKahvQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQ 967
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELE---REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 968 DENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTe 1047
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE- 477
|
330 340
....*....|....*....|....*.
gi 402478633 1048 kmlQDKVNKTSKERQQQVEAVELEAK 1073
Cdd:TIGR02169 478 ---YDRVEKELSKLQRELAEAEAQAR 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
832-1264 |
1.94e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 832 QDLKQEIKALKEEIGNVQLEKAQQ--LSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDL--------ANTGKWLQDLQ 901
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirGNGGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 902 EENESLKAHVQEVAQhnlKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKlfkSQIEQLK 981
Cdd:COG4913 345 REIERLERELEERER---RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 982 QQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQ-RKKNNDLR-----------EKNWE-AMEALAST-- 1046
Cdd:COG4913 419 RE----------LRELEAEIASLERRKSNIPARLLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERVLGGfa 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1047 ---------EKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLS-----YGEWLHGF-------------- 1098
Cdd:COG4913 489 ltllvppehYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDfkphpFRAWLEAElgrrfdyvcvdspe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1099 ----EKKA--KECMAGTSGSEEVK----------VL----EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsvE 1158
Cdd:COG4913 569 elrrHPRAitRAGQVKGNGTRHEKddrrrirsryVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE--R 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1159 QEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETL 1238
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
490 500
....*....|....*....|....*.
gi 402478633 1239 TKLRTEQnERQKVAGDLHKAQQSLEL 1264
Cdd:COG4913 727 EELDELQ-DRLEAAEDLARLELRALL 751
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
509-1210 |
2.58e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 509 AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALkAQIQQF 588
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR-ARIEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 589 HSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH 666
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHS 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 667 ELEKMQQSVYVKDDKIRLLEEQ--LQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKciQEKDEKL 744
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQhtLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ--GQLAHAK 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 745 KTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDqvsfaslvEELKKVIHEKDGKIKSVEELLeaellkv 824
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQ--------LQTKEQIHLQETRKKAVVLAR------- 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 825 ankektvqdlKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:TIGR00618 496 ----------LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 905 ESLKAHVQEVAQhnLKEASSasqfEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDE-NKLFKSQIEQLKQQ 983
Cdd:TIGR00618 566 QEIQQSFSILTQ--CDNRSK----EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEqDLQDVRLHLQQCSQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 984 NYQQASSfPPHEELLKVISEREKEISGLWNELDSLK--------DAVEHQRKKNNDLREKNWEAMEALASTEKMLQD--- 1052
Cdd:TIGR00618 640 ELALKLT-ALHALQLTLTQERVREHALSIRVLPKELlasrqlalQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydr 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1053 ---KVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMH 1129
Cdd:TIGR00618 719 efnEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1130 TLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHL 1209
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
.
gi 402478633 1210 E 1210
Cdd:TIGR00618 879 N 879
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
399-781 |
2.65e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.90 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 399 QETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNttnqLESKQSAelNKLRQDYARLVNELTEKTGKLQQEEVQKKN 478
Cdd:PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRARE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 479 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQqdlQSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLMESeq 558
Cdd:PRK10929 135 ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLA---QAQLTALQAESAALKALV-------DELE--LAQLSAN-- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 559 krvNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQ---------TSASVLAE---ELHKVIAEKDKQIKQTEDSL--- 623
Cdd:PRK10929 201 ---NRQELARLRSELAKKRSQQLDAYLQALRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAQFKINRELSQALnqq 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 624 ASERDRLTSKE-----EELKDIQNMNFL----------------LKAEVQKLQalaneqaaaahELEKMQQsvyVKDDKI 682
Cdd:PRK10929 278 AQRMDLIASQQrqaasQTLQVRQALNTLreqsqwlgvsnalgeaLRAQVARLP-----------EMPKPQQ---LDTEMA 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 683 RLLEEQLQHEisnkmeefKILNDQNKALKSEVQKLQTLVSEQpnkdvveqmeKCIQekDEKLKTVEELLETGLIQVATKE 762
Cdd:PRK10929 344 QLRVQRLRYE--------DLLNKQPQLRQIRQADGQPLTAEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLI 403
|
410 420
....*....|....*....|..
gi 402478633 763 EELNAIRTENSSLT---KEVQD 781
Cdd:PRK10929 404 LELTKLKVANSQLEdalKEVNE 425
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
825-953 |
3.20e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKaqqlsiTSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEKELRER------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 402478633 905 ESLKAHVQE-VAQHN--LKEASSASQFEELEIVLKEKENELKR-LEAMLKERE 953
Cdd:PRK12704 127 EKKEEELEElIEEQLqeLERISGLTAEEAKEILLEKVEEEARHeAAVLIKEIE 179
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
612-1028 |
3.64e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 612 KDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIrlleEQLQH 691
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQEL----EEILH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 692 EISNKMEEFKilnDQNKALKSEVQKLQTLVseqpnKDVVEQMEkciQEKDEKLKTVEELLeTGLIQVATKEEELNAIRTE 771
Cdd:pfam01576 79 ELESRLEEEE---ERSQQLQNEKKKMQQHI-----QDLEEQLD---EEEAARQKLQLEKV-TTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 772 NSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKvanKEKTVQDLKQEIKALKEEIGNVQle 851
Cdd:pfam01576 147 NSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK---EEKGRQELEKAKRKLEGESTDLQ-- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 852 kAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHV-QEVAQHNLKEASSASQFEE 930
Cdd:pfam01576 222 -EQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLeSERAARNKAEKQRRDLGEE 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 931 LEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEE--------LLKVIS 1002
Cdd:pfam01576 301 LEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEqakrnkanLEKAKQ 380
|
410 420
....*....|....*....|....*....
gi 402478633 1003 EREKEISGLWNELDSL---KDAVEHQRKK 1028
Cdd:pfam01576 381 ALESENAELQAELRTLqqaKQDSEHKRKK 409
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
824-1233 |
4.37e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 824 VANKEKTVQDLKQEIKALKEEIGNVQL---EKAQQLSITS----KVQELQNLLKGKEEQMNTMKAV-LEEKEKDLANTGK 895
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLiidEKRQQLERLRrereKAERYQALLKEKREYEGYELLKeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 896 WLQDLQEENESLKAHVQEVAQhnlkeassasQFEELEIVLKEKENELKRL----EAMLKERESDLSSKTQLLQDVQDENK 971
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEK----------RLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 972 lfksqiEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweaMEALASTEKMLQ 1051
Cdd:TIGR02169 315 ------RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1052 DKVnktsKERQQQVEAVELEAKEVLKKLFPKVsvpsnlsygewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTL 1131
Cdd:TIGR02169 385 DEL----KDYREKLEKLKREINELKRELDRLQ---------------EELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1132 LQLECEKyksvlaetegilqklqrsveQEENkwkvkvdeshktIKQMQSSFTSSEQELERLRSENKDIEnlrREREHLEM 1211
Cdd:TIGR02169 446 KALEIKK--------------------QEWK------------LEQLAADLSKYEQELYDLKEEYDRVE---KELSKLQR 490
|
410 420
....*....|....*....|..
gi 402478633 1212 ELEKAEMERSTYVTEVRELKAQ 1233
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAV 512
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-641 |
4.96e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 411 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDyarlvNELTEKTGKLQQEEVQKKNAEQAATQLKVQL 490
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 491 QEAERRWEEVQSYIRKRTAEHEAAQQDlqskfvakeNEVQSLHSKLtdtlvskQQLEQRLMQLmeseQKRVNKEESlqmQ 570
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQS---------PVIQQLRAQL-------AELEAELAEL----SARYTPNHP---D 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402478633 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVlaeelhKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQ 641
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAEL------EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-532 |
8.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 316 QDALKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEmmtekersnvvITRMKDRIGTLEKEHNVFQNKIH 395
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-----------IAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 396 VSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAV---------SNTTNQLESKQSAELNKLRQDYARLVNELTEKT 466
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 402478633 467 GKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 532
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
691-1322 |
1.04e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 691 HEISNKMEEFKILNDQNKALKSEVQKLQTLVSeqpnKDVVEQMEKC---IQEKDE---KLKTVEELL-ETGLIQVATKEE 763
Cdd:COG5022 803 LSLLGSRKEYRSYLACIIKLQKTIKREKKLRE----TEEVEFSLKAevlIQKFGRslkAKKRFSLLKkETIYLQSAQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASlveELKKVIhEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:COG5022 879 LAERQLQELKIDVKSISSLKLVNLELESEII---ELKKSL-SSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 844 EIGNVQLEKAqqlSITSKVQELQNLLKGKEE---QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHN-- 918
Cdd:COG5022 955 ELNKLHEVES---KLKETSEEYEDLLKKSTIlvrEGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQsa 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 919 ---LKEASSASQ----FEELEIVLKEKENEL-KRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASs 990
Cdd:COG5022 1032 skiISSESTELSilkpLQKLKGLLLLENNQLqARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVK- 1110
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 991 fpPHEELLKVISE-----REKEISGLWNE-LDSLKDAVEHQRKKNNDLREKNWEA-MEALASTekmlqDKVNKTSKERQQ 1063
Cdd:COG5022 1111 --PANVLQFIVAQmiklnLLQEISKFLSQlVNTLEPVFQKLSVLQLELDGLFWEAnLEALPSP-----PPFAALSEKRLY 1183
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1064 QVEAVELEAK---EVLKKLFPKVSVPSNLSYGEWLHGFEKK--AKECMAGTSGSEevkvlehKLKEADEMHTLLQLECEK 1138
Cdd:COG5022 1184 QSALYDEKSKlssSEVNDLKNELIALFSKIFSGWPRGDKLKklISEGWVPTEYST-------SLKGFNNLNKKFDTPASM 1256
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1139 YKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTS---SEQELERLRSENKDIENL-----RREREHLE 1210
Cdd:COG5022 1257 SNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRtkaSSLRWKSATEVNYNSEELddwcrEFEISDVD 1336
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1211 MELEkaEMERSTYVTEVRELKAQLNETLTKLRTEQN--ERQKVAGDLHKAQQSLEL---IQSKIV------KAAGDTTVI 1279
Cdd:COG5022 1337 EELE--ELIQAVKVLQLLKDDLNKLDELLDACYSLNpaEIQNLKSRYDPADKENNLpkeILKKIEallikqELQLSLEGK 1414
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 402478633 1280 ENSDVSPETESSEKETMsVSLNQTVTQLQQLLQAVNQQLTKEK 1322
Cdd:COG5022 1415 DETEVHLSEIFSEEKSL-ISLDRNSIYKEEVLSSLSALLTKEK 1456
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
333-891 |
1.12e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 333 QLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVR 412
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 413 EQMEAEIAHLKQENGilrdAVSNTTNQLESKQSAELNKlrqDYARLVNEL-TEKTGKLQQEEVQKKNAEQAATQLKVQLQ 491
Cdd:pfam12128 357 ENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQNNR---DIAGIKDKLaKIREARDRQLAVAEDDLQALESELREQLE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 492 EAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRVNKEE 565
Cdd:pfam12128 430 AGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRDQASE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 566 SLQMQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEK-----DKQIKQTEDSLASERD----RLT 631
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISPEllhrtDLDPEVWDGSVGGELNlygvKLD 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 632 SKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALK 711
Cdd:pfam12128 587 LKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 712 seVQKLQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLEtgliqvATKEEELNAiRTENSSLTKEVQDLKAKQndqvs 791
Cdd:pfam12128 667 --DKKNKALAERK--DSANERLNSLEAQLKQLDKKHQAWLE------EQKEQKREA-RTEKQAYWQVVEGALDAQ----- 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 792 FASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKG 871
Cdd:pfam12128 731 LALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRP 810
|
570 580
....*....|....*....|.
gi 402478633 872 K-EEQMNTMKAVLEEKEKDLA 891
Cdd:pfam12128 811 RlATQLSNIERAISELQQQLA 831
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-1065 |
1.44e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 561 VNKEESLQMQVQDILEQNEALKAQIQQF-HSQIAAQTSASvlAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKD 639
Cdd:COG4717 15 RDRTIEFSPGLNVIYGPNEAGKSTLLAFiRAMLLERLEKE--ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 640 IQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsVYVKDDKIRLLEEQLQH------EISNKMEEFKILNDQNKALKSE 713
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAElperleELEERLEELRELEEELEELEAE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 714 VQKLQTLVSEQPNkDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQ---- 789
Cdd:COG4717 172 LAELQEELEELLE-QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 790 --------VSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSK 861
Cdd:COG4717 251 llliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 862 VQELQNLLkgkeeqmntmkavLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLK----- 936
Cdd:COG4717 331 PPDLSPEE-------------LLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaeey 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 937 -EKENELKRLEAMLKERESDLSSKTQLLQDVQDENKL--FKSQIEQLKQQnyqqassfppHEELLKVISEREKEISGLWN 1013
Cdd:COG4717 398 qELKEELEELEEQLEELLGELEELLEALDEEELEEELeeLEEELEELEEE----------LEELREELAELEAELEQLEE 467
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 402478633 1014 --ELDSLKDAVEHQRKKNNDLREKNweamEALASTEKMLQDKVNKTSKERQQQV 1065
Cdd:COG4717 468 dgELAELLQELEELKAELRELAEEW----AALKLALELLEEAREEYREERLPPV 517
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
826-1049 |
1.45e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 826 NKEKTVQDLKQ----EIKALKEEIGNVQLEKAQQLSIT-----SKVQELQNLLKGKEEQMNTMK-----AVLEEKEKDLA 891
Cdd:PRK05771 17 YKDEVLEALHElgvvHIEDLKEELSNERLRKLRSLLTKlsealDKLRSYLPKLNPLREEKKKVSvksleELIKDVEEELE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 892 NTGKWLQDLQEENESLKAHVQEVaQHNLKEASSASQFEELEIVLKEKEN---ELKRLEAMLKERESDLSSKTQLLQDVQD 968
Cdd:PRK05771 97 KIEKEIKELEEEISELENEIKEL-EQEIERLEPWGNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 969 ENKLF----------KSQIEQLKQQNYQQASsFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL------ 1032
Cdd:PRK05771 176 KGYVYvvvvvlkelsDEVEEELKKLGFERLE-LEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEllalye 254
|
250 260
....*....|....*....|..
gi 402478633 1033 -----REKNwEAMEALASTEKM 1049
Cdd:PRK05771 255 yleieLERA-EALSKFLKTDKT 275
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
929-1026 |
1.55e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 929 EELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQassfppHEELLKVISEREKE- 1007
Cdd:PRK12704 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK------EEELEELIEEQLQEl 144
|
90 100
....*....|....*....|....*..
gi 402478633 1008 --ISGLWNE------LDSLKDAVEHQR 1026
Cdd:PRK12704 145 erISGLTAEeakeilLEKVEEEARHEA 171
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
861-1269 |
1.78e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 861 KVQELQNLLKGKEEQmntmKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHnLKEASSASQFEELEIVLKEKEN 940
Cdd:COG4717 72 ELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 941 ELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFP-PHEELLKVISEREKEISGLWNELDSLK 1019
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAeELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1020 DAVEH--QRKKNNDLREKNWEAME------------------------------------ALASTEKMLQDKVNKTSKER 1061
Cdd:COG4717 227 EELEQleNELEAAALEERLKEARLllliaaallallglggsllsliltiagvlflvlgllALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1062 QQQVEAVELEAKEVLKKLFPKVSVPSNLSYGEWLHGFEKkakecmagtsgSEEVKVLEHKLKEADEMHTLLQLEcEKYKS 1141
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR-----------IEELQELLREAEELEEELQLEELE-QEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1142 VLAET-----EGILQKLQRSVEQEENKWKVKVDEShktikQMQSSFTSSEQELERLrsenkDIENLRREREHLEMELEKA 1216
Cdd:COG4717 375 LLAEAgvedeEELRAALEQAEEYQELKEELEELEE-----QLEELLGELEELLEAL-----DEEELEEELEELEEELEEL 444
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 402478633 1217 EMERSTYVTEVRELKAQLN-----ETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI 1269
Cdd:COG4717 445 EEELEELREELAELEAELEqleedGELAELLQELEELKAELRELAEEWAALKLALELL 502
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
731-1023 |
1.84e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 731 EQMEKC--IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN-SSLTKEVQDLKAKQNDQVSFASLVEELKKVIhekd 807
Cdd:PRK05771 4 VRMKKVliVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 808 gKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKaQQLSITSKVQ-ELQNLLKGKeeqmnTMKAVLEEK 886
Cdd:PRK05771 80 -SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI-ERLEPWGNFDlDLSLLLGFK-----YVSVFVGTV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 887 EKDLANTGKwlqdlqeeneslkahvQEVAQHNLKEASSASQFEELEIV-----LKEKENELKRLEAmLKERESDLSSKTQ 961
Cdd:PRK05771 153 PEDKLEELK----------------LESDVENVEYISTDKGYVYVVVVvlkelSDEVEEELKKLGF-ERLELEEEGTPSE 215
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 402478633 962 LLQDVQDENKLFKSQIEQLKqqnyqqassfpphEELLKVISEREKEISGLWNELDSLKDAVE 1023
Cdd:PRK05771 216 LIREIKEELEEIEKERESLL-------------EELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
389-1011 |
1.92e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 389 VFQNKIHVSYQETQQMQMKFQQVREQMEA--EIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNELtekt 466
Cdd:pfam10174 57 VLKEQYRVTQEENQHLQLTIQALQDELRAqrDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKEL---- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 467 gklqqeEVQKKNAEQAATQLKVQLQEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKEN 527
Cdd:pfam10174 133 ------FLLRKTLEEMELRIETQKQTLGARDESIKKLLemlqskglpkksgeedwerTRRIAEAEMQLGHLEVLLDQKEK 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 528 EVQSLHSKL----------TDTLVSKQQLEQRLMQLMESEQKRVNKEESLQM----------QVQDILEQNEA------- 580
Cdd:pfam10174 207 ENIHLREELhrrnqlqpdpAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMlktngllhteDREEEIKQMEVykshskf 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 581 -------LKAQIQQFHSQIAA-QTSASVLAEELH------KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqnmnfL 646
Cdd:pfam10174 287 mknkidqLKQELSKKESELLAlQTKLETLTNQNSdckqhiEVLKESLTAKEQRAAILQTEVDALRLRLEEKES------F 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 647 LKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLleeqLQHEISNKMEEFKILNDQNKALKSEVQKLQTlvsEQPN 726
Cdd:pfam10174 361 LNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINV----LQKKIENLQEQLRDKDKQLAGLKERVKSLQT---DSSN 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 727 KD-VVEQMEKCIQEKDeklKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEE----LKK 801
Cdd:pfam10174 434 TDtALTTLEEALSEKE---RIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEhassLAS 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 802 VIHEKDGKIKSVE----------ELLEAELLKVANKEKT----------VQDLKQEIKALKEEIGNVQLEKAQQLSITSK 861
Cdd:pfam10174 511 SGLKKDSKLKSLEiaveqkkeecSKLENQLKKAHNAEEAvrtnpeindrIRLLEQEVARYKEESGKAQAEVERLLGILRE 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 862 VQELQNLlkgKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVA---QHNLKEASSASQFEELEIVLKEK 938
Cdd:pfam10174 591 VENEKND---KDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEArrrEDNLADNSQQLQLEELMGALEKT 667
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 402478633 939 ENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQqnyqqassfpphEELLKVISEREKEISGL 1011
Cdd:pfam10174 668 RQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ------------EALLAAISEKDANIALL 728
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
412-621 |
2.24e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.98 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDY-------ARLVN-ELTEKTGKLQQEEVQKKNAEQAA 483
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQrdaileeSRAVTkELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 484 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRVNK 563
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 402478633 564 EESLQMQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQIKQTED 621
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDES 1777
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
727-1020 |
3.30e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 727 KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLkakqNDQVSFASLVEELKKVIHEK 806
Cdd:TIGR01612 557 KKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNI----SDKNEYIKKAIDLKKIIENN 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 807 DGKIKSVEELLEAELLK-VANKEKTVQDLKQEikalkeeignvqLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEE 885
Cdd:TIGR01612 633 NAYIDELAKISPYQVPEhLKNKDKIYSTIKSE------------LSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDD 700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 886 KEKDLANTGKWLQDLqeENESLKAHVQEVaqHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQD 965
Cdd:TIGR01612 701 LKSKIDKEYDKIQNM--ETATVELHLSNI--ENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAK 776
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 402478633 966 VQDENKLFKSQIEQLKQQNYQQAS-----------SFPPHEELLKVISEREKEISGLWNELDSLKD 1020
Cdd:TIGR01612 777 EKDELNKYKSKISEIKNHYNDQINidnikdedakqNYDKSKEYIKTISIKEDEIFKIINEMKFMKD 842
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
898-1074 |
4.15e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 898 QDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQI 977
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 978 EQLKQQNYQQASSFPP------------------HEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEA 1039
Cdd:COG4942 107 AELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190
....*....|....*....|....*....|....*.
gi 402478633 1040 MEALASTEKMLQDKVNKTSKER-QQQVEAVELEAKE 1074
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELaELAAELAELQQEA 222
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
468-637 |
5.05e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 468 KLQQEEVQKKNAEQAAtQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHskltdtlvskQQLE 547
Cdd:PRK04863 501 LLRRLREQRHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----EDELEQLQ----------EELE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 548 QRLMQLmeSEQKRVNKEEslQMQVQDILEQneaLKAQIQQFHSQ----IAAQTSASVLAE-------------ELHKVIA 610
Cdd:PRK04863 565 ARLESL--SESVSEARER--RMALRQQLEQ---LQARIQRLAARapawLAAQDALARLREqsgeefedsqdvtEYMQQLL 637
|
170 180
....*....|....*....|....*..
gi 402478633 611 EKDKQIKQTEDSLASERDRLTSKEEEL 637
Cdd:PRK04863 638 ERERELTVERDELAARKQALDEEIERL 664
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
554-895 |
5.33e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.46 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 554 MESEQKR-VNKEESLQMQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASErDRLTS 632
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQ-ERLEN 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 633 KEEELKDI----QNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR---LLE-----EQLQHEISNKMEEF 700
Cdd:PLN03229 491 LREEFSKAnsqdQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRakaLSEkkskaEKLKAEINKKFKEV 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 701 KI---LNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELnAIRTENSSLTK 777
Cdd:PLN03229 571 MDrpeIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 778 EVQDLKAKQNDQVSFASLVEELKKVIHEkdgkiksveelleaELLKVANKEKTVQ-DLKQEIKALKEEIGNVQLEKAQQL 856
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIEL--------------LKLEVAKASKTPDvTEKEKIEALEQQIKQKIAEALNSS 715
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 402478633 857 SITSKVQELQNLLKGKEEQMNTMKAVLEE---KEKDLANTGK 895
Cdd:PLN03229 716 ELKEKFEELEAELAAARETAAESNGSLKNdddKEEDSKEDGS 757
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
468-801 |
7.37e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 468 KLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 547
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 548 QRLMQLmesEQKRVNKEEslqmQVQDILEQNEALKAQIQQFHSQIAAQTSASVLA--EELHKVIAEK--DKQIKQTEDSL 623
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaqEKIHVEILEEqlEKLRNELLIRG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 624 ASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLqheISNKMEEFKIL 703
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 704 NDQNKALKSEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLET--------------GLIQVATK--EEELNA 767
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEASlkeanvskfssykvELLQQKLKllEERLQA 369
|
330 340 350
....*....|....*....|....*....|....
gi 402478633 768 IRTENSSLTKEVQDLKAKQNDQVSfaSLVEELKK 801
Cdd:PLN02939 370 SDHEIHSYIQLYQESIKEFQDTLS--KLKEESKK 401
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
603-1283 |
8.80e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 8.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 603 EELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANeqaaaahelekmqqsvyVKDDKI 682
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK-----------------KNKDKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 683 rlleEQLQHEISNKMEEFKILNDQNKALKSEVQKLqtlvseqpnkdvveqmEKCIQEKDEKLKTVeelletgLIQVATKE 762
Cdd:TIGR04523 99 ----NKLNSDLSKINSEIKNDKEQKNKLEVELNKL----------------EKQKKENKKNIDKF-------LTEIKKKE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 763 EELNAIRTENSSLTKEVQDLKAKQN-------------DQVSFASLVEELK-KVIHEKDGKIKSVEELLEAELLKVANKE 828
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENELNllekeklniqkniDKIKNKLLKLELLlSNLKKKIQKNKSLESQISELKKQNNQLK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 KTVQDLKQEIKALKEEIGNVQlekAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDL--QEENES 906
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQ---TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnQKEQDW 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 907 LKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQ 986
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 987 QASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTE---KMLQDKVNKTSKERQQ 1063
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkELIIKNLDNTRESLET 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1064 QVEAVELEAKEVLKKLFPKVSvpsnlsygewlhGFEKKAKECMAGTsgsEEVKVLEHKLKEADEMHTLLQLECEKYKSVL 1143
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQK------------ELKSKEKELKKLN---EEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1144 AETEGILQKLQRsveqeenkwKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAEM----E 1219
Cdd:TIGR04523 534 KEKESKISDLED---------ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKdlikE 604
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402478633 1220 RSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSD 1283
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
377-556 |
9.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 377 KDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEA-------------------EIAHLKQEngilRDAVSNTT 437
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswdeidvasaerEIAELEAE----LERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 438 NQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYI---RKRTAEHEAA 514
Cdd:COG4913 685 DDLAALE-EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAV 763
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 402478633 515 QQDLQSKFvakENEVQSLHSKLtdtlvskQQLEQRLMQLMES 556
Cdd:COG4913 764 ERELRENL---EERIDALRARL-------NRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1003-1329 |
1.14e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1003 EREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQdkvnktskERQQQVEAVELEAKEVLKKLFpk 1082
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--------ELRLELEELELELEEAQAEEY-- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1083 vsvpsnlsygewlhgfekkakecmagtSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLqrsvEQEEN 1162
Cdd:COG1196 292 ---------------------------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1163 KWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLR 1242
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1243 TEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTtviensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEK 1322
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAEL----------EEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
....*..
gi 402478633 1323 EHYQVLE 1329
Cdd:COG1196 491 ARLLLLL 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
757-959 |
1.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 757 QVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQ 836
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKAL---LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 837 EIKALKEEIGNvQLEKAQQLSITSKV-------------------QELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL 897
Cdd:COG4942 98 ELEAQKEELAE-LLRALYRLGRQPPLalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 898 QDLQEENESLKAHVQE--------VAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSK 959
Cdd:COG4942 177 EALLAELEEERAALEAlkaerqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
737-915 |
1.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 737 IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEel 816
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVR-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 817 leaellkvanKEKTVQDLKQEIKALKEEIGnvQLEKaQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTgkw 896
Cdd:COG1579 87 ----------NNKEYEALQKEIESLKRRIS--DLED-EILELMERIEELEEELAELEAELAELEAELEEKKAELDEE--- 150
|
170
....*....|....*....
gi 402478633 897 LQDLQEENESLKAHVQEVA 915
Cdd:COG1579 151 LAELEAELEELEAEREELA 169
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
596-1209 |
2.18e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 596 TSASVLAEELHKVIAEKDKQIKQTEDSLAsERDRLTSKEEELKDIQNMnflLKAEVQKLQALANEQAAAAHELEKMQQSV 675
Cdd:PRK01156 131 NSIFVGQGEMDSLISGDPAQRKKILDEIL-EINSLERNYDKLKDVIDM---LRAEISNIDYLEEKLKSSNLELENIKKQI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 676 YVKDDKIRLLEEqlqhEISNKMEEFKILNDQNKALKSEVQKLQTLvseqpnKDVVEQMEKCIQEKDEKLKTVEElletGL 755
Cdd:PRK01156 207 ADDEKSHSITLK----EIERLSIEYNNAMDDYNNLKSALNELSSL------EDMKNRYESEIKTAESDLSMELE----KN 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 756 IQVATKEEELNAIrtENSSLTK---EVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVaNKEKTVQ 832
Cdd:PRK01156 273 NYYKELEERHMKI--INDPVYKnrnYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYI-KKKSRYD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 833 DLKQEIKALKEEIGNVQLEKAQQLSITSKVQE-----------LQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQ 901
Cdd:PRK01156 350 DLNNQILELEGYEMDYNSYLKSIESLKKKIEEyskniermsafISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLN 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 902 EENESLKAHVQEVAQH-NLKEASSASQF-------EELEIVLKEKENELKRLEAMLKERESDLSS-KTQLLQDVQDENKL 972
Cdd:PRK01156 430 QRIRALRENLDELSRNmEMLNGQSVCPVcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDiDEKIVDLKKRKEYL 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 973 FKSQIEQLKQQnYQQASSFPPHEELLKVISEREKEISGLWNELDSlkdavEHQRKKNNDLREKNWEAMEALASTEKMLQD 1052
Cdd:PRK01156 510 ESEEINKSINE-YNKIESARADLEDIKIKINELKDKHDKYEEIKN-----RYKSLKLEDLDSKRTSWLNALAVISLIDIE 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1053 KVNKTSKERQQQVEAVELEAKEVlkklfpKVSVPSNLSYgewlhgFEKKAKECmagtsgSEEVKVLEHKLKEADEMHTL- 1131
Cdd:PRK01156 584 TNRSRSNEIKKQLNDLESRLQEI------EIGFPDDKSY------IDKSIREI------ENEANNLNNKYNEIQENKILi 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1132 --LQLECEKYKSVLAETEGILQKLQ----RSVEQEEN----------------KWKVKVDESHKTIKQMQSSFTSSEQEL 1189
Cdd:PRK01156 646 ekLRGKIDNYKKQIAEIDSIIPDLKeitsRINDIEDNlkksrkalddakanraRLESTIEILRTRINELSDRINDINETL 725
|
650 660
....*....|....*....|
gi 402478633 1190 ERLRSENKDIENLRREREHL 1209
Cdd:PRK01156 726 ESMKKIKKAIGDLKRLREAF 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
409-790 |
2.22e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 409 QQVREQMEAEIAHLKQENGILRDAVSNTTNQLEskqsaeLNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKV 488
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKLLQ------LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 489 QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmESEQKRVNKEESLQ 568
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-ENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 569 MQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLAS-ERDRLTSKEEELKDIQNMNFLL 647
Cdd:COG4717 247 EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEaEELQALPALEELEEEELEELLA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 648 KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISN------------------KMEEFKILNDQNKA 709
Cdd:COG4717 327 ALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvedeeelraaleQAEEYQELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN--SSLTKEVQDLKAKQN 787
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGelAELLQELEELKAELR 486
|
...
gi 402478633 788 DQV 790
Cdd:COG4717 487 ELA 489
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1001-1255 |
2.43e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1001 ISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALAS--TEKMLQDKVNKTSKER-QQQVEAVELEAKEV-- 1075
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNkyDELVEEAKTIKAEIEElTDELLNLVMDIEDPsa 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1076 -LKKLFPK-VSVPSNLSYGEWLHGFEKKAKECMAGTSGseevkvlehkLKEADEMhtllqleCEKYKSVLAETEGILQKL 1153
Cdd:PHA02562 256 aLNKLNTAaAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ----------ISEGPDR-------ITKIKDKLKELQHSLEKL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1154 QRSVEQEENKwKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENlrrerehlemELEKAEMERSTYVTEVRELKAQ 1233
Cdd:PHA02562 319 DTAIDELEEI-MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA----------AIEELQAEFVDNAEELAKLQDE 387
|
250 260
....*....|....*....|....*
gi 402478633 1234 LNE---TLTKLRTEQNERQKVAGDL 1255
Cdd:PHA02562 388 LDKivkTKSELVKEKYHRGIVTDLL 412
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
856-970 |
2.50e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 856 LSITSKVQELQNLLKgKEEQMNTMKAVLEeKEKDLANTGKwLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVL 935
Cdd:COG0542 404 MEIDSKPEELDELER-RLEQLEIEKEALK-KEQDEASFER-LAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
|
90 100 110
....*....|....*....|....*....|....*
gi 402478633 936 KEKENELKRLEAMLKERESDLSSKTQLLQDVQDEN 970
Cdd:COG0542 481 EQRYGKIPELEKELAELEEELAELAPLLREEVTEE 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
412-532 |
2.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAA-------T 484
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpasaeefA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 402478633 485 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 532
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-845 |
2.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 593 AAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQAlaneqaaaahELEKMQ 672
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----------ELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 673 QSVYVKDDKIRLLEEQLQheisnkmEEFKILNDQNKAL--KSEVQKLQTLVSEQPNKDVVEQMekciqekdEKLKTVEEL 750
Cdd:COG4942 83 AELAELEKEIAELRAELE-------AQKEELAELLRALyrLGRQPPLALLLSPEDFLDAVRRL--------QYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 751 LETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfaslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT 830
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|....*
gi 402478633 831 VQDLKQEIKALKEEI 845
Cdd:COG4942 222 AEELEALIARLEAEA 236
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
825-967 |
2.89e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 41.78 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQL-SITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEE 903
Cdd:PRK00106 68 ALKKELLLEAKEEARKYREEIEQEFKSERQELkQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 402478633 904 NESLkahvQEVAQHNLKEASSASQFEELEIVLKEKENEL--------KRLEAMLKEReSDLSSKTQLLQDVQ 967
Cdd:PRK00106 148 VEKL----EEQKKAELERVAALSQAEAREIILAETENKLtheiatriREAEREVKDR-SDKMAKDLLAQAMQ 214
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
437-781 |
3.09e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 437 TNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 516
Cdd:COG4372 22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 517 DLQSkfvaKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQT 596
Cdd:COG4372 102 ELES----LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 597 SA---SVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQ 673
Cdd:COG4372 178 EAeaeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVIL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 674 SVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLET 753
Cdd:COG4372 258 KEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLA 337
|
330 340
....*....|....*....|....*...
gi 402478633 754 GLIQVATKEEELNAIRTENSSLTKEVQD 781
Cdd:COG4372 338 ELADLLQLLLVGLLDNDVLELLSKGAEA 365
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
431-641 |
3.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 431 DAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRtae 510
Cdd:COG3883 16 PQIQAKQKELSELQ-AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 511 heAAQQDLQSKFVAKENEVqsLHSKLTDTLVSKQQLeqrLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQfhs 590
Cdd:COG3883 92 --ARALYRSGGSVSYLDVL--LGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEAKKAELEAKLAELEA--- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 402478633 591 qiaAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQ 641
Cdd:COG3883 162 ---LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
900-1228 |
3.29e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 900 LQEENESLKAHVQEvaQHNLKEASSASQFE---------ELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDEN 970
Cdd:pfam17380 301 LRQEKEEKAREVER--RRKLEEAEKARQAEmdrqaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 971 KLFKSQIE-QLKQQNYQQASSFPPHEELLKviSEREKEISGLWNELDSLKDAVEHQRKknndlreknwEAMEALASTEKM 1049
Cdd:pfam17380 379 ELERLQMErQQKNERVRQELEAARKVKILE--EERQRKIQQQKVEMEQIRAEQEEARQ----------REVRRLEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1050 LQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSnlsygewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMH 1129
Cdd:pfam17380 447 EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKR-----------DRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1130 TLLQLECEKYKSVLAETEgilqklQRSVEQEENKWKVKVDEShktiKQMQSSFTSSEQELERLRSENKDIENLrreREHL 1209
Cdd:pfam17380 516 KLLEKEMEERQKAIYEEE------RRREAEEERRKQQEMEER----RRIQEQMRKATEERSRLEAMEREREMM---RQIV 582
|
330
....*....|....*....
gi 402478633 1210 EMELEKAEMERSTYVTEVR 1228
Cdd:pfam17380 583 ESEKARAEYEATTPITTIK 601
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
934-1250 |
3.29e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 934 VLKEKENELKRLEAMLKERESD-----LSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEI 1008
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1009 SGL-------WNELDSLKDAVEHQRKKNNDLREknwEAMEALASTEkmLQDKVNKTSKERQQQVEAVELEAKEVLKKLFP 1081
Cdd:PRK02224 261 EDLretiaetEREREELAEEVRDLRERLEELEE---ERDDLLAEAG--LDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1082 KVSVpsnlsygewlhgFEKKAKecmagtSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ---RSVE 1158
Cdd:PRK02224 336 AAQA------------HNEEAE------SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEeeiEELR 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1159 QEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHL-------EMELEKAEMERSTYVTEVRELK 1231
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALleagkcpECGQPVEGSPHVETIEEDRERV 477
|
330
....*....|....*....
gi 402478633 1232 AQLNETLTKLRTEQNERQK 1250
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEE 496
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
723-1269 |
3.73e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 723 EQPNKDVVEQMEKCIQEKDEKLKTVEELLETgliqVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKV 802
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRDEADEV----LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRER 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 803 IHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLE----KAQQLSITSKVQELQNLLKGKEEQMNT 878
Cdd:PRK02224 288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAaqahNEEAESLREDADDLEERAEELREEAAE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 879 MKAVLEEKEKDLANTGKWLQDLQEENESLKAHVqevaqhnlkeASSASQFEELEIVLKEKENELKRLEAMLKERESDLSS 958
Cdd:PRK02224 368 LESELEEAREAVEDRREEIEELEEEIEELRERF----------GDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 959 ktqlLQDVQDENKLFksqIEQLKQQNYQQASSFPPHEEllkVISEREKEISGLWNELDSLKDAVEHqrkknndlREKNWE 1038
Cdd:PRK02224 438 ----ARERVEEAEAL---LEAGKCPECGQPVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEE--------VEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1039 AMEALASTEKMLQdkvnkTSKERQQQVEAVELEAKEvlkklfpkvsvpsnlsygewlhGFEKKAKECmagTSGSEEVKVL 1118
Cdd:PRK02224 500 RAEDLVEAEDRIE-----RLEERREDLEELIAERRE----------------------TIEEKRERA---EELRERAAEL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1119 EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQeenkwkvkvdeshktikqmqssftsseqeLERLRSENKD 1198
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES-----------------------------LERIRTLLAA 600
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402478633 1199 IENLRREREHLEMELE-KAEM--ERSTYVTEVRELKAQLNETLTKLRTEQNERQKvagdlHKAQQSLELIQSKI 1269
Cdd:PRK02224 601 IADAEDEIERLREKREaLAELndERRERLAEKRERKRELEAEFDEARIEEAREDK-----ERAEEYLEQVEEKL 669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
320-509 |
4.09e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQ 399
Cdd:COG4942 50 EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 400 ETQQ---MQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQS--AELNKLRQDYARLVNELTEKTGKLQQEEV 474
Cdd:COG4942 130 DFLDavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAllAELEEERAALEALKAERQKLLARLEKELA 209
|
170 180 190
....*....|....*....|....*....|....*
gi 402478633 475 QKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTA 509
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
478-701 |
4.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 478 NAEQAATqLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-----SKFVAKENEVQSLHSKLtdtlvskQQLEQRLMQ 552
Cdd:COG4913 608 NRAKLAA-LEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREI-------AELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 553 LMESeqkrvnkeeslQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQIKQTEDSLASERDRLTS 632
Cdd:COG4913 680 LDAS-----------SDDLAALEEQLEELEAELEELEEEL----------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 402478633 633 KEEELKDIQnmNFLLKAEVQKLQALANEQAAAahelEKMQQSVYVKDDKIRLLEEQLQheisNKMEEFK 701
Cdd:COG4913 739 AEDLARLEL--RALLEERFAAALGDAVERELR----ENLEERIDALRARLNRAEEELE----RAMRAFN 797
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
635-860 |
4.49e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 635 EELKDIQ---NMNFLLKAEVQKLQALANEQAaaaHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALK 711
Cdd:PHA02562 157 EDLLDISvlsEMDKLNKDKIRELNQQIQTLD---MKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 712 SEVQKLQTLVSE--QPNKDVVEQMEKC------IQEKDEKLKTVEELLETGLI------QVATKEEELNAIRTENSSLTK 777
Cdd:PHA02562 234 AEIEELTDELLNlvMDIEDPSAALNKLntaaakIKSKIEQFQKVIKMYEKGGVcptctqQISEGPDRITKIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 778 EVQDLKAKQNDQVSFASLVEELKKVIHE--------------KDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLLElknkistnkqslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393
|
250
....*....|....*..
gi 402478633 844 EIGNVQLEKAQQLSITS 860
Cdd:PHA02562 394 TKSELVKEKYHRGIVTD 410
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1183-1269 |
6.09e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1183 TSSEQELERLRSEnkdIENLRREREHLEMELEKAEMERstyVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSL 1262
Cdd:COG0542 407 DSKPEELDELERR---LEQLEIEKEALKKEQDEASFER---LAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
|
....*..
gi 402478633 1263 ELIQSKI 1269
Cdd:COG0542 481 EQRYGKI 487
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
830-1078 |
7.15e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 830 TVQDLKQEIKALKEEignvQLEKAQQLSITSKVQELQNLLKGKEEQmntmKAVLEEKEKDLANTGKWLQDLQEENESLKA 909
Cdd:PRK11281 37 TEADVQAQLDALNKQ----KLLEAEDKLVQQDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 910 HVQEVAQHNLKEASSAsqfeELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQdeNKLFKSQiEQLKQQNYQQAS 989
Cdd:PRK11281 109 DNDEETRETLSTLSLR----QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ--AALYANS-QRLQQIRNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 990 SFPPHEELlkviseREKEISGLWNELDSLKDAVEHQRK--KNND-----LREKNWEAMEALASTEKM---LQDKVN---- 1055
Cdd:PRK11281 182 GKVGGKAL------RPSQRVLLQAEQALLNAQNDLQRKslEGNTqlqdlLQKQRDYLTARIQRLEHQlqlLQEAINskrl 255
|
250 260
....*....|....*....|....*..
gi 402478633 1056 ----KTSKERQQQVEAVELEAKEVLKK 1078
Cdd:PRK11281 256 tlseKTVQEAQSQDEAARIQANPLVAQ 282
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
687-1329 |
8.08e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 687 EQLQHEISNKMEEFKILND-------QNKALKSEVQKLQTLVSEQPNKDVVEQmeKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKnlnkdeeKINNSNNKIKILEQQIKDLNDKLKKNK--DKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 760 TKEEELNAIRTE----NSSLTKEVQDLKAKQNDQVSFASLVEELKKvihekdgKIKSVEELLEAELLKVANKEKTVQDLK 835
Cdd:TIGR04523 121 KLEVELNKLEKQkkenKKNIDKFLTEIKKKEKELEKLNNKYNDLKK-------QKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 836 QEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEva 915
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE-- 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 916 qhnlkeasSASQFEELEIVLKEKENELKRLEAMLKERESdlssktqllQDVQDENKLFKSQIEQLKQQNyqqassfpphE 995
Cdd:TIGR04523 272 --------KQKELEQNNKKIKELEKQLNQLKSEISDLNN---------QKEQDWNKELKSELKNQEKKL----------E 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 996 ELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKvNKTSKERQQQVEAVELEAKEV 1075
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY-KQEIKNLESQINDLESKIQNQ 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1076 LKKlfpkvsvpsNLSYGEWLHGFEKkakecmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQR 1155
Cdd:TIGR04523 404 EKL---------NQQKDEQIKKLQQ-------------EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1156 SVEQEENKWKV---KVDESHKTIKQMQSSFTSSEQELERLRSENKDIEN----LRREREHLEMELEKAEMERSTYVTEVR 1228
Cdd:TIGR04523 462 TRESLETQLKVlsrSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEkvkdLTKKISSLKEKIEKLESEKKEKESKIS 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1229 ELKAQLNETLTKLRTEQNERQKvagdlhkaqqslELIQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQ 1308
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEI------------DEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE 609
|
650 660
....*....|....*....|.
gi 402478633 1309 QLLQAVNQQLTKEKEHYQVLE 1329
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLS 630
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1118-1271 |
9.85e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 1118 LEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSEnk 1197
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEK--EIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE-- 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402478633 1198 dIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVK 1271
Cdd:COG1579 98 -IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
829-1009 |
9.85e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 829 KTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKekDLANTGKwlQDLQEENESLK 908
Cdd:PHA02562 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG--GVCPTCT--QQISEGPDRIT 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 909 AHVQEVA--QHNLKEASSASQfeeleiVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKqqnyq 986
Cdd:PHA02562 303 KIKDKLKelQHSLEKLDTAID------ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ----- 371
|
170 180
....*....|....*....|...
gi 402478633 987 qaSSFPPHEELLKVISEREKEIS 1009
Cdd:PHA02562 372 --AEFVDNAEELAKLQDELDKIV 392
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
278-904 |
9.95e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 9.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 278 ENAEVKFKDFLLSLKTMMFSEDEALCVVDLLKEKSGVIQDALKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQ 357
Cdd:TIGR00606 443 ELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 358 LTQEMMTEKERSNVVITRMKD------RIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVRE---QMEAEIAHLKQENGI 428
Cdd:TIGR00606 523 EMEQLNHHTTTRTQMEMLTKDkmdkdeQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKeinQTRDRLAKLNKELAS 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 429 LRDAVSNTTNQLESKQSAELNKLR--------QDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEV 500
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSYEDklfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPV 682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 501 QSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLT------DTLVSKQQLEQRLMQLMESEQKRVnkEESLQMQVQDI 574
Cdd:TIGR00606 683 CQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKkkekrrDEMLGLAPGRQSIIDLKEKEIPEL--RNKLQKVNRDI 760
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 575 LEQNEALKAQIQQFHSQIAAQTSASVLAEELhKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQnmnflLKAEVQKL 654
Cdd:TIGR00606 761 QRLKNDIEEQETLLGTIMPEEESAKVCLTDV-TIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ-----VNQEKQEK 834
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 655 QALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHE---ISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVE 731
Cdd:TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 732 Q--MEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQD-----LKAKQNDQVSFASLVEELKKVIH 804
Cdd:TIGR00606 915 EtfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgkddyLKQKETELNTVNAQLEECEKHQE 994
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402478633 805 --EKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNV--QLEKAQQLSITSKVQELQNLLKGKEEQMNTMK 880
Cdd:TIGR00606 995 kiNEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHlkEMGQMQVLQMKQEHQKLEENIDLIKRNHVLAL 1074
|
650 660
....*....|....*....|....
gi 402478633 881 AVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:TIGR00606 1075 GRQKGYEKEIKHFKKELREPQFRD 1098
|
|
| |
