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ankyrin repeat and LEM domain-containing protein 1 isoform 3 [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
GIY-YIG_SF super family | cl15257 | GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large ... |
424-507 | 5.08e-31 | |||
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions. The actual alignment was detected with superfamily member cd10454: Pssm-ID: 472790 Cd Length: 114 Bit Score: 116.63 E-value: 5.08e-31
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
22-128 | 4.18e-19 | |||
Ankyrin repeat [Signal transduction mechanisms]; : Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 88.09 E-value: 4.18e-19
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Name | Accession | Description | Interval | E-value | |||
GIY-YIG_COG3680_Meta | cd10454 | GIY-YIG domain of hypothetical proteins from Metazoa; Members of this family are functionally ... |
424-507 | 5.08e-31 | |||
GIY-YIG domain of hypothetical proteins from Metazoa; Members of this family are functionally uncharacterized hypothetical proteins from Metazoa. They have bacterial homologs that display sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. However, unlike their bacterial relatives, these Metazoan proteins contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of them do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domains composition suggests members in this subfamily might participate in interactions with multiple partners and imply some important cellular functions. Pssm-ID: 198401 Cd Length: 114 Bit Score: 116.63 E-value: 5.08e-31
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
22-128 | 4.18e-19 | |||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 88.09 E-value: 4.18e-19
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PTZ00322 | PTZ00322 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
62-128 | 2.23e-08 | |||
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 57.22 E-value: 2.23e-08
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
56-128 | 2.38e-08 | |||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 51.66 E-value: 2.38e-08
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Name | Accession | Description | Interval | E-value | |||
GIY-YIG_COG3680_Meta | cd10454 | GIY-YIG domain of hypothetical proteins from Metazoa; Members of this family are functionally ... |
424-507 | 5.08e-31 | |||
GIY-YIG domain of hypothetical proteins from Metazoa; Members of this family are functionally uncharacterized hypothetical proteins from Metazoa. They have bacterial homologs that display sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. However, unlike their bacterial relatives, these Metazoan proteins contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of them do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domains composition suggests members in this subfamily might participate in interactions with multiple partners and imply some important cellular functions. Pssm-ID: 198401 Cd Length: 114 Bit Score: 116.63 E-value: 5.08e-31
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
22-128 | 4.18e-19 | |||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 88.09 E-value: 4.18e-19
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
22-130 | 2.25e-16 | |||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 80.00 E-value: 2.25e-16
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
22-145 | 2.77e-10 | |||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 61.51 E-value: 2.77e-10
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
61-128 | 2.12e-09 | |||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 58.81 E-value: 2.12e-09
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PTZ00322 | PTZ00322 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
62-128 | 2.23e-08 | |||
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 57.22 E-value: 2.23e-08
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
56-128 | 2.38e-08 | |||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 51.66 E-value: 2.38e-08
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Ank_4 | pfam13637 | Ankyrin repeats (many copies); |
77-128 | 7.37e-08 | |||
Ankyrin repeats (many copies); Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 49.20 E-value: 7.37e-08
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PHA02875 | PHA02875 | ankyrin repeat protein; Provisional |
11-130 | 7.67e-07 | |||
ankyrin repeat protein; Provisional Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 51.92 E-value: 7.67e-07
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
80-128 | 9.43e-07 | |||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 47.03 E-value: 9.43e-07
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PHA02876 | PHA02876 | ankyrin repeat protein; Provisional |
56-130 | 2.49e-06 | |||
ankyrin repeat protein; Provisional Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 50.45 E-value: 2.49e-06
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
23-121 | 8.98e-06 | |||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 48.48 E-value: 8.98e-06
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GIY-YIG_COG3680 | cd10440 | GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs; This ... |
427-491 | 1.57e-05 | |||
GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs; This family includes a group of functionally uncharacterized proteins from bacteria and their eukaryotic homologs which are present only in metazoa. These proteins might have nuclease activities and possibly be engaged in DNA repair or recombination, since they share sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. Distinct from their prokaryotic relatives, the eukaryotic homologs contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of eukaryotic homologs do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domain composition of the eukaryotic homologs suggests that they might participate in interactions with multiple partners and implies important cellular function. Pssm-ID: 198387 [Multi-domain] Cd Length: 94 Bit Score: 43.91 E-value: 1.57e-05
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Ank_5 | pfam13857 | Ankyrin repeats (many copies); |
62-116 | 1.94e-05 | |||
Ankyrin repeats (many copies); Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 42.33 E-value: 1.94e-05
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
11-106 | 2.39e-05 | |||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 43.18 E-value: 2.39e-05
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PTZ00322 | PTZ00322 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
84-128 | 2.18e-04 | |||
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 44.12 E-value: 2.18e-04
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Ank | pfam00023 | Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
78-106 | 3.18e-03 | |||
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 35.34 E-value: 3.18e-03
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PHA02878 | PHA02878 | ankyrin repeat protein; Provisional |
59-128 | 4.22e-03 | |||
ankyrin repeat protein; Provisional Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 39.86 E-value: 4.22e-03
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PHA02884 | PHA02884 | ankyrin repeat protein; Provisional |
62-118 | 5.40e-03 | |||
ankyrin repeat protein; Provisional Pssm-ID: 165212 [Multi-domain] Cd Length: 300 Bit Score: 39.20 E-value: 5.40e-03
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Blast search parameters | ||||
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