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Conserved domains on  [gi|544063449|ref|NP_001269582|]
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stress-induced-phosphoprotein 1 isoform c [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-498 8.26e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 8.26e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 229 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrt 308
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE---- 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 309 pdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 388
Cdd:COG0457   71 ----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 389 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSScKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 468
Cdd:COG0457  129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAALGEAALALAAAEVLLALLLALEQAL 207

                        250       260       270
                 ....*....|....*....|....*....|
gi 544063449 469 PEVQQIMSDPAMRLILEQMQKDPQALSEHL 498
Cdd:COG0457  208 RKKLAILTLAALAELLLLALALLLALRLAA 237
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 106-160 5.32e-16

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


:

Pssm-ID: 436075  Cd Length: 55  Bit Score: 72.21  E-value: 5.32e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449  106 MPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLG 160
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
NlpI super family cl34822
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-70 2.05e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4785:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 2.05e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544063449   7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
TPR_1 pfam00515
Tetratricopeptide repeat;
207-234 2.99e-03

Tetratricopeptide repeat;


:

Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.99e-03
                          10        20
                  ....*....|....*....|....*...
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTN 234
Cdd:pfam00515   7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-498 8.26e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 8.26e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 229 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrt 308
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE---- 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 309 pdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 388
Cdd:COG0457   71 ----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 389 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSScKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 468
Cdd:COG0457  129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAALGEAALALAAAEVLLALLLALEQAL 207

                        250       260       270
                 ....*....|....*....|....*....|
gi 544063449 469 PEVQQIMSDPAMRLILEQMQKDPQALSEHL 498
Cdd:COG0457  208 RKKLAILTLAALAELLLLALALLLALRLAA 237
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 7-508 2.08e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.58  E-value: 2.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449    7 LKEKGNKALSVGNIDDALQCYSEAIKLDPhNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGLKHEAN-NPQLK 85
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANaYDGLG 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449   86 E---------------GLQNMEARLAERKFMNPFNMPNLYQKLESDPrtRTLLSDPTYRELIEQLRNKPSDLGtkLQDpr 150
Cdd:TIGR00990 209 KyadalldltasciidGFRNEQSAQAVERLLKKFAESKAKEILETKP--ENLPSVTFVGNYLQSFRPKPRPAG--LED-- 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  151 imttlSVLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENK---KQALKEKELGNDAYKKKDFDTALKHYDKA 227
Cdd:TIGR00990 283 -----SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKlgeKEAIALNLRGTFKCLKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  228 KELDP-TNMTYItNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYrqiakaYARiGNSYFKEEKYKDAIHFYNKSLAeh 306
Cdd:TIGR00990 358 IELDPrVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------YHR-AQLHFIKGEFAQAGKDYQKSID-- 427

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  307 rtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 386
Cdd:TIGR00990 428 ------------------------LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  387 QLALKDCEECIQLEPTF------IKGYTRKAAAL-EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPE 459
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETkpmymnVLPLINKALALfQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 544063449  460 DVKRRAmadpEVQQIMSDPAMRLILEQMQKDPQALSEhlKNPVIAQKIQ 508
Cdd:TIGR00990 564 LFERAA----ELARTEGELVQAISYAEATRTQIQVQE--DYPVLASKLQ 606
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 458-512 2.06e-17

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 76.06  E-value: 2.06e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449  458 PEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMD 512
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 106-160 5.32e-16

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 72.21  E-value: 5.32e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449  106 MPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLG 160
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 342-436 4.15e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 61.34  E-value: 4.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 342 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 421
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                         90
                 ....*....|....*
gi 544063449 422 KAMDVYQKALDLDSS 436
Cdd:PLN03088  88 TAKAALEKGASLAPG 102
STI1 smart00727
Heat shock chaperonin-binding motif;
468-507 3.03e-08

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 49.57  E-value: 3.03e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 544063449   468 DPEVQQIMSDPAMRLILEQMQKDPQALSEHLK-NPVIAQKI 507
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-70 2.05e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 2.05e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544063449   7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 5-73 1.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 1.24e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544063449   5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71
lysogeny_AimR NF038310
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ...
 241-366 3.16e-04

AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.


Pssm-ID: 468467  Cd Length: 363  Bit Score: 42.90  E-value: 3.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 241 QAAVYFEKGDYNKCRELCEKAIEvgrENREDYRQIAKAYARIGNSYFKEEkYKDAIHFYNKSLaehrtpDVLKKCQQAEK 320
Cdd:NF038310 193 LAYAYLRRNELEEAREYCNEIIN---SANNFPLLKATAYYCLGESYIFED-YEKALKYLEKSL------ELLKKIKNKKI 262

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 544063449 321 ILKEQE---RLAYI----NPDLALEEKNKGNE----CFQKGDYPQAMKHYTEAIKRN 366
Cdd:NF038310 263 ERKYKAflnTLAFLkiywNKDLDKIDILDPAEkaflEIKKGNKEKAIKILEELEKEN 319
TPR_11 pfam13414
TPR repeat;
11-52 3.19e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 3.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 544063449   11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG 52
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 341-451 3.33e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 3.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 341 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTfiKGYTRK------AAAL 414
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGYEKYlylgqlSGGE 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 544063449 415 EAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQ 451
Cdd:cd24142   83 EALQYYEKGIEILEEELQalqAASAEAEEEAEELKRKLSS 122
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 5-70 3.91e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 3.91e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063449   5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_1 pfam00515
Tetratricopeptide repeat;
207-234 2.99e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.99e-03
                          10        20
                  ....*....|....*....|....*...
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTN 234
Cdd:pfam00515   7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 7-37 4.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.53e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 544063449     7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 205-234 9.12e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 9.12e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 544063449   205 KELGNDAYKKKDFDTALKHYDKAKELDPTN 234
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-498 8.26e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 8.26e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 229 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrt 308
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE---- 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 309 pdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 388
Cdd:COG0457   71 ----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 389 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSScKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 468
Cdd:COG0457  129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAALGEAALALAAAEVLLALLLALEQAL 207

                        250       260       270
                 ....*....|....*....|....*....|
gi 544063449 469 PEVQQIMSDPAMRLILEQMQKDPQALSEHL 498
Cdd:COG0457  208 RKKLAILTLAALAELLLLALALLLALRLAA 237
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 206-490 6.83e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.48  E-value: 6.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAYARIGNS 285
Cdd:COG2956   47 ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-------ALRLLAEI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 286 YFKEEKYKDAIhfynkslaehrtpdvlkkcQQAEKILKEQERLAYINPDLALEEknkgnecFQKGDYPQAMKHYTEAIKR 365
Cdd:COG2956  120 YEQEGDWEKAI-------------------EVLERLLKLGPENAHAYCELAELY-------LEQGDYDEAIEALEKALKL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 366 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDssckeaadgyq 445
Cdd:COG2956  174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD----------- 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 544063449 446 rcmmaqynrhdsPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKD 490
Cdd:COG2956  243 ------------PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
207-446 8.36e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 8.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 207 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 286
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLGLAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 287 FKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 366
Cdd:COG0457   87 QALGRYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 367 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 446
Cdd:COG0457  141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 265-451 1.64e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 91.98  E-value: 1.64e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 265 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGN 344
Cdd:COG3914   41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 345 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM 424
Cdd:COG3914  121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200

                        170       180
                 ....*....|....*....|....*..
gi 544063449 425 DVYQKALDLDSSCKEAADGYQRCMMAQ 451
Cdd:COG3914  201 AAYRRALELDPDNADAHSNLLFALRQA 227
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 7-508 2.08e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 91.58  E-value: 2.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449    7 LKEKGNKALSVGNIDDALQCYSEAIKLDPhNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGLKHEAN-NPQLK 85
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANaYDGLG 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449   86 E---------------GLQNMEARLAERKFMNPFNMPNLYQKLESDPrtRTLLSDPTYRELIEQLRNKPSDLGtkLQDpr 150
Cdd:TIGR00990 209 KyadalldltasciidGFRNEQSAQAVERLLKKFAESKAKEILETKP--ENLPSVTFVGNYLQSFRPKPRPAG--LED-- 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  151 imttlSVLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENK---KQALKEKELGNDAYKKKDFDTALKHYDKA 227
Cdd:TIGR00990 283 -----SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKlgeKEAIALNLRGTFKCLKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  228 KELDP-TNMTYItNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYrqiakaYARiGNSYFKEEKYKDAIHFYNKSLAeh 306
Cdd:TIGR00990 358 IELDPrVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------YHR-AQLHFIKGEFAQAGKDYQKSID-- 427

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  307 rtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 386
Cdd:TIGR00990 428 ------------------------LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  387 QLALKDCEECIQLEPTF------IKGYTRKAAAL-EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPE 459
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETkpmymnVLPLINKALALfQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 544063449  460 DVKRRAmadpEVQQIMSDPAMRLILEQMQKDPQALSEhlKNPVIAQKIQ 508
Cdd:TIGR00990 564 LFERAA----ELARTEGELVQAISYAEATRTQIQVQE--DYPVLASKLQ 606
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 458-512 2.06e-17

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 76.06  E-value: 2.06e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449  458 PEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMD 512
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
271-441 1.61e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.80  E-value: 1.61e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 271 DYRQIAKAYARIGNSYFKEEKY-------KDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKG 343
Cdd:COG4785    1 LYALALALLLALALAAAAASKAaillaalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 344 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 423
Cdd:COG4785   81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                        170
                 ....*....|....*...
gi 544063449 424 MDVYQKALDLDSSCKEAA 441
Cdd:COG4785  161 IADLEKALELDPNDPERA 178
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 106-160 5.32e-16

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 72.21  E-value: 5.32e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449  106 MPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLG 160
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 241-465 3.50e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.03  E-value: 3.50e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 241 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 320
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALA---------------- 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 321 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 400
Cdd:COG3914  141 ----------LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544063449 401 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAdgyqrCMMAQYNRHDSPEDVKRRA 465
Cdd:COG3914  211 PDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS-----PFALLYLPDDDPAELLALA 270
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 190-400 8.26e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.87  E-value: 8.26e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 190 MEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENr 269
Cdd:COG3914   67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 270 edyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQK 349
Cdd:COG3914  146 ------AEAYLNLGEALRRLGRLEEAIAALRRALE--------------------------LDPDNAEALNNLGNALQDL 193

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 544063449 350 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 400
Cdd:COG3914  194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 196-435 9.75e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.40  E-value: 9.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  196 ENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPtNMTYITNQAAVYFEKGDYNKCRELCEKAIEVgrenREDYrqi 275
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL----DPDY--- 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  276 AKAYARIGNSYFKEEKYKDA---------IHFYNKSLAEHRTPDVLKKcqQAEKILKE-----QERLAYIN--------- 332
Cdd:TIGR00990 194 SKALNRRANAYDGLGKYADAlldltasciIDGFRNEQSAQAVERLLKK--FAESKAKEiletkPENLPSVTfvgnylqsf 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  333 ---PDLA-LEEKNKGNECFQKGDYPQAMKH--------YTEAI----------KRNPKDAKLYSNRAACYTKLLEFQLAL 390
Cdd:TIGR00990 272 rpkPRPAgLEDSNELDEETGNGQLQLGLKSpeskadesYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEAL 351

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 544063449  391 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 435
Cdd:TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 336-470 3.29e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.98  E-value: 3.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 336 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 415
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449 416 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPE 470
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-431 1.12e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 1.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449   9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEdgcktvdlkpdwgkglkheannpqlkegl 88
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIR----------------------------- 63

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  89 qnmearlaerkfmnpfnmpnLYQKLesdprtrtllsdptyrelieqlrnkpsdlgtklqdprimttlsvllgvdlgsmde 168
Cdd:COG2956   64 --------------------IHQKL------------------------------------------------------- 68

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 169 eeeiatpppppppkketkpepmeEDLPENKKQALkeKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK 248
Cdd:COG2956   69 -----------------------LERDPDRAEAL--LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 249 GDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerl 328
Cdd:COG2956  124 GDWEKAIEVLERLLKLGPEN-------AHAYCELAELYLEQGDYDEAIEALEKALK------------------------ 172

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 329 ayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTfIKGYT 408
Cdd:COG2956  173 --LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLL 249

                        410       420
                 ....*....|....*....|...
gi 544063449 409 RKAAALEAMKDYTKAMDVYQKAL 431
Cdd:COG2956  250 ALADLLERKEGLEAALALLERQL 272
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 312-434 1.47e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.59  E-value: 1.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 312 LKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 391
Cdd:COG5010   30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 544063449 392 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 434
Cdd:COG5010  110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 200-369 1.53e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 1.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 200 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAY 279
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-------AR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 280 ARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHY 359
Cdd:COG4783   76 LNLGLALLKAGDYDEALALLEKALK--------------------------LDPEHPEAYLRLARAYRALGRPDEAIAAL 129

                        170
                 ....*....|
gi 544063449 360 TEAIKRNPKD 369
Cdd:COG4783  130 EKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 347-434 2.61e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 2.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 347 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 426
Cdd:COG4235   28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107


                 ....*...
gi 544063449 427 YQKALDLD 434
Cdd:COG4235  108 WQKLLALL 115
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
347-436 3.15e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.10  E-value: 3.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 347 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKdCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 426
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                         90
                 ....*....|
gi 544063449 427 YQKALDLDSS 436
Cdd:COG3063   82 LERALELDPS 91
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 342-436 4.15e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 61.34  E-value: 4.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 342 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 421
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                         90
                 ....*....|....*
gi 544063449 422 KAMDVYQKALDLDSS 436
Cdd:PLN03088  88 TAKAALEKGASLAPG 102
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 241-401 6.95e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 6.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 241 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 320
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDN-------PEAFALLGEILLQLGDLDEAIVLLHEALE---------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 321 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 400
Cdd:COG4783   67 ----------LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136


                 .
gi 544063449 401 P 401
Cdd:COG4783  137 P 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
207-377 1.77e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 1.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 207 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 286
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-------ADALYNLGIAL 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 287 FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 366
Cdd:COG0457  155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234

                        170
                 ....*....|.
gi 544063449 367 PKDAKLYSNRA 377
Cdd:COG0457  235 LAALALYQYRA 245
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 206-304 2.19e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.78  E-value: 2.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 285
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLGLA 94

                         90
                 ....*....|....*....
gi 544063449 286 YFKEEKYKDAIHFYNKSLA 304
Cdd:COG4235   95 AFQQGDYAEAIAAWQKLLA 113
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
363-440 5.38e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.94  E-value: 5.38e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544063449 363 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 440
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 354-440 3.01e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 3.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 354 QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 433
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                 ....*..
gi 544063449 434 DSSCKEA 440
Cdd:COG4235   81 DPDNPEA 87
STI1 smart00727
Heat shock chaperonin-binding motif;
468-507 3.03e-08

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 49.57  E-value: 3.03e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 544063449   468 DPEVQQIMSDPAMRLILEQMQKDPQALSEHLK-NPVIAQKI 507
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 191-306 2.97e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 2.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 191 EEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 270
Cdd:COG5010   44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 544063449 271 DYRQIAKAYARIGNsyfkeekYKDAIHFYNKSLAEH 306
Cdd:COG5010  124 AYSNLAALLLSLGQ-------DDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
240-304 3.67e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 3.67e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063449  240 NQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 304
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
211-304 4.04e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.24  E-value: 4.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 211 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELcEKAIEVGRENredyrqiAKAYARIGNSYFKEE 290
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNN-------AEALLNLAELLLELG 73

                         90
                 ....*....|....
gi 544063449 291 KYKDAIHFYNKSLA 304
Cdd:COG3063   74 DYDEALAYLERALE 87
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-70 2.05e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 2.05e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544063449   7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 342-440 6.38e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 6.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 342 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 421
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90
                 ....*....|....*....
gi 544063449 422 KAMDVYQKALDLDSSCKEA 440
Cdd:COG2956   94 RAEELLEKLLELDPDDAEA 112
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 207-463 7.03e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 7.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSy 286
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE- 549

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  287 fkeekyKDAIHFYNKSLAEHRTPdvlkkcqqaekilkeqerlayINPDLALEEKNKGnecfqKGDYPQAMKHYTEAIKRN 366
Cdd:TIGR02917 550 ------EEAVAWLEKAAELNPQE---------------------IEPALALAQYYLG-----KGQLKKALAILNEAADAA 597

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  367 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAadgyQR 446
Cdd:TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA----QI 673

                         250
                  ....*....|....*..
gi 544063449  447 CMMAQYNRHDSPEDVKR 463
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKK 690
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 5-73 1.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 1.24e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544063449   5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 220-378 1.68e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 1.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 220 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSyfkeekykdaihfy 299
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT-------------- 67

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544063449 300 nkslaehrtpdvlkkcQQAEKILKEQERLAYINPDLALeekNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA 378
Cdd:COG4235   68 ----------------EEAEELLERALALDPDNPEALY---LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 207-440 1.70e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 1.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR----ELCEKA------------IEVGRENRE 270
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadALLKKApnsplahylkalVDFQKKNYE 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  271 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRtpdvlkkcQQAEKILKEQERLAYINPDLALEEKNKGNecfqkg 350
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY--------QYLNQILKYAPNSHQARRLLASIQLRLGR------ 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  351 dYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 430
Cdd:TIGR02917 345 -VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423

                         250
                  ....*....|
gi 544063449  431 LDLDSSCKEA 440
Cdd:TIGR02917 424 AQLDPELGRA 433
TPR_11 pfam13414
TPR repeat;
343-383 1.76e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 1.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 544063449  343 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 383
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
206-364 1.84e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 1.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 285
Cdd:COG4785   78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AYAYLNRGIA 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 286 YFKEEKYKDAIHFYNKSLAEHRTPDvlkkcqqaEKILKEQERLAYINPDLALEEKNK--GNECFQKGDYPQAMKHYTEAI 363
Cdd:COG4785  151 LYYLGRYELAIADLEKALELDPNDP--------ERALWLYLAERKLDPEKALALLLEdwATAYLLQGDTEEARELFKLAL 222


                 .
gi 544063449 364 K 364
Cdd:COG4785  223 A 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-71 1.88e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 1.88e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544063449   1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71
Cdd:COG3914   75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF 145
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 276-401 2.62e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 2.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 276 AKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQA 355
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALR--------------------------LDPDNADALLDLAEALLAAGDTEEA 70

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 544063449 356 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 401
Cdd:COG4235   71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 241-401 2.73e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 2.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 241 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 320
Cdd:COG5010   19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ---------------- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 321 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 400
Cdd:COG5010   83 ----------LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152


                 .
gi 544063449 401 P 401
Cdd:COG5010  153 P 153
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 206-334 3.07e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGrenredyRQIAKAYARIGNS 285
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------PSLAKAYLRKGTA 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 544063449 286 YFKEEKYKDAIHFYNK--SLA--EHRTPDVLKKCQqaEKILKEQERLAYINPD 334
Cdd:PLN03088  80 CMKLEEYQTAKAALEKgaSLApgDSRFTKLIKECD--EKIAEEEKDLVQPVPS 130
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
18-80 3.20e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 3.20e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGLKHEAN 80
Cdd:COG0457   90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
10-70 3.74e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 3.74e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544063449  10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 11-71 7.48e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 7.48e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544063449  11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71
Cdd:COG3914  153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 206-436 1.07e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 285
Cdd:TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  286 yfkeekyKDAIHFYNKSLAEHRTP----DVLKKCQQA----EKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMK 357
Cdd:TIGR02917 584 -------KKALAILNEAADAAPDSpeawLMLGRAQLAagdlNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  358 HYTEAIKRNPKDAKLysnraacytKLLEFQLAL--KDCEECIQLEPTFIKGYTRKAAALE-------AMKDYTKAMDVYQ 428
Cdd:TIGR02917 657 SLKRALELKPDNTEA---------QIGLAQLLLaaKRTESAKKIAKSLQKQHPKAALGFElegdlylRQKDYPAAIQAYR 727


                  ....*...
gi 544063449  429 KALDLDSS 436
Cdd:TIGR02917 728 KALKRAPS 735
TPR_1 pfam00515
Tetratricopeptide repeat;
370-403 1.83e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 1.83e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 544063449  370 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 403
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
18-70 2.02e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.02e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 207-440 2.30e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG--- 283
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGqfd 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  284 --NSYFK--EEKYKD---------AIHFYNKSLAEHRtpdvlkkcQQAEKILKeqerlayINPDLALEEKNKGNECFQKG 350
Cdd:TIGR02917 449 kaLAAAKklEKKQPDnaslhnllgAIYLGKGDLAKAR--------EAFEKALS-------IEPDFFPAAANLARIDIQEG 513

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  351 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 430
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593

                         250
                  ....*....|
gi 544063449  431 LDLDSSCKEA 440
Cdd:TIGR02917 594 ADAAPDSPEA 603
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
210-383 2.47e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.59  E-value: 2.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 210 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKE 289
Cdd:COG4785   48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL-------AEAYNNRGLAYLLL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 290 EKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 369
Cdd:COG4785  121 GDYDAALEDFDRALE--------------------------LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174

                        170
                 ....*....|....
gi 544063449 370 AKLYSNRAACYTKL 383
Cdd:COG4785  175 PERALWLYLAERKL 188
lysogeny_AimR NF038310
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ...
 241-366 3.16e-04

AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.


Pssm-ID: 468467  Cd Length: 363  Bit Score: 42.90  E-value: 3.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 241 QAAVYFEKGDYNKCRELCEKAIEvgrENREDYRQIAKAYARIGNSYFKEEkYKDAIHFYNKSLaehrtpDVLKKCQQAEK 320
Cdd:NF038310 193 LAYAYLRRNELEEAREYCNEIIN---SANNFPLLKATAYYCLGESYIFED-YEKALKYLEKSL------ELLKKIKNKKI 262

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 544063449 321 ILKEQE---RLAYI----NPDLALEEKNKGNE----CFQKGDYPQAMKHYTEAIKRN 366
Cdd:NF038310 263 ERKYKAflnTLAFLkiywNKDLDKIDILDPAEkaflEIKKGNKEKAIKILEELEKEN 319
TPR_11 pfam13414
TPR repeat;
11-52 3.19e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 3.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 544063449   11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG 52
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 341-451 3.33e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 3.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 341 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTfiKGYTRK------AAAL 414
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGYEKYlylgqlSGGE 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 544063449 415 EAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQ 451
Cdd:cd24142   83 EALQYYEKGIEILEEELQalqAASAEAEEEAEELKRKLSS 122
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 18-71 3.38e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 3.38e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71
Cdd:COG5010   68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 11-57 3.62e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 3.62e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 544063449  11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 5-70 3.91e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 3.91e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063449   5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 206-278 4.10e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 4.10e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY---RQIAKA 278
Cdd:COG4235   56 DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARlleASIAEA 131
TPR_1 pfam00515
Tetratricopeptide repeat;
340-369 5.00e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 5.00e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 544063449  340 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 369
Cdd:pfam00515   5 YNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 276-304 6.99e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 6.99e-04
                           10        20
                   ....*....|....*....|....*....
gi 544063449   276 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 304
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 340-369 7.71e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 7.71e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 544063449   340 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 369
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 216-436 8.78e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 8.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  216 DFDTALKHYDKAKELDptnmtYITNQAAVYFEK-----GDYNKCRELCEKAIEVGRENRedyrqiAKAYARIGNSYFKEE 290
Cdd:TIGR02917  71 DYAAAEKELRKALSLG-----YPKNQVLPLLARayllqGKFQQVLDELPGKTLLDDEGA------AELLALRGLAYLGLG 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  291 KYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKN------KGNECFQKGDYPQAMKHYTEA 362
Cdd:TIGR02917 140 QLELAQKSYEQALAidPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNvdalllKGDLLLSLGNIELALAAYRKA 219

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544063449  363 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 436
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
244-368 1.00e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 244 VYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFynkslaehrtpdvlkkcqqaekilk 323
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAIAL------------------------- 48

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 544063449 324 eqERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 368
Cdd:COG3063   49 --EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 347-432 1.05e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 347 FQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---GYTRKAAALEAMKDY 420
Cdd:COG1729    4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDY 83

                         90
                 ....*....|..
gi 544063449 421 TKAMDVYQKALD 432
Cdd:COG1729   84 DKARATLEELIK 95
TPR_1 pfam00515
Tetratricopeptide repeat;
276-303 1.08e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.08e-03
                          10        20
                  ....*....|....*....|....*...
gi 544063449  276 AKAYARIGNSYFKEEKYKDAIHFYNKSL 303
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 214-436 1.26e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  214 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYnkcrelcEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 293
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT-------ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  294 DAIHFYNKSLAEHRTPD-------VLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 366
Cdd:TIGR02917 721 AAIQAYRKALKRAPSSQnaiklhrALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  367 PKDAKLYSNRAACYTKLLEFQlALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 436
Cdd:TIGR02917 801 PDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 369-499 1.45e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 369 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 448
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 544063449 449 MAQyNRHDSPEDVKRRAMA----DPEVQQIMSDpamrlILEQMQKDPQALSEHLK 499
Cdd:COG4783   83 LKA-GDYDEALALLEKALKldpeHPEAYLRLAR-----AYRALGRPDEAIAALEK 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
14-59 1.47e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 1.47e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 544063449  14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA 47
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 11-59 1.57e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 544063449  11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 18-99 1.59e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEdgcktvdlkpDWGKGLKHEANNPQLKEGLQNMEARLAE 97
Cdd:COG4783   52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA----------LLEKALKLDPEHPEAYLRLARAYRALGR 121


                 ..
gi 544063449  98 RK 99
Cdd:COG4783  122 PD 123
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
343-430 2.15e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.87  E-value: 2.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 343 GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG-----YTRkaaALEA 416
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSdahllYAR---ALEA 172

                         90
                 ....*....|....
gi 544063449 417 MKDYTKAMDVYQKA 430
Cdd:COG4700  173 LGDLEAAEAELEAL 186
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 370-403 2.69e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 2.69e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 544063449   370 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 403
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-60 2.72e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 2.72e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 544063449   2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVL 60
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 361-469 2.92e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 361 EAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 440
Cdd:COG5010   45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124

                         90       100
                 ....*....|....*....|....*....
gi 544063449 441 ADGYQRCMMAQYNRHDSPEDVKRRAMADP 469
Cdd:COG5010  125 YSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
207-234 2.99e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.99e-03
                          10        20
                  ....*....|....*....|....*...
gi 544063449  207 LGNDAYKKKDFDTALKHYDKAKELDPTN 234
Cdd:pfam00515   7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 206-264 3.27e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.53  E-value: 3.27e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 544063449 206 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 264
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL 63
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
18-60 3.47e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 3.47e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Cdd:COG0457  124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 211-435 4.49e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 4.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 211 AYKKKDFDTALKHYDKAKELDPTN--MTYITnQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN---- 284
Cdd:COG3071   60 AQALGDYERRDEYLAQALELAPEAelAVLLT-RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDweel 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 285 ----------SYFKEEKYK------------------DAIHFYNKSL--AEHRTPDV----------LKKCQQAEKILKE 324
Cdd:COG3071  139 lellpalrkhKALSAEEAQalerraylgllrqaardaEALKALWKALprAERRDPELaaayaraliaLGDHDEAERLLRE 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 325 ------QERLAYINPDLALeeknkgnecfqkGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 398
Cdd:COG3071  219 alkrqwDPRLVRLYGRLQG------------GDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALA 286

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 544063449 399 LEPTfIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 435
Cdd:COG3071  287 LRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 7-37 4.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.53e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 544063449     7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 18-69 4.78e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 4.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 544063449  18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Cdd:COG5010  102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 210-306 5.43e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 5.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 210 DAYKKKDFDTALKHYDKAKELDPTNmTYITN----QAAVYFEKGDYNKCRELCEKAIevgrENREDYRQIAKAYARIGNS 285
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNS-PLAPDalywLGEAYYALGDYDEAAEAFEKLL----KRYPDSPKAPDALLKLGLS 76

                         90       100
                 ....*....|....*....|.
gi 544063449 286 YFKEEKYKDAIHFYNKSLAEH 306
Cdd:COG1729   77 YLELGDYDKARATLEELIKKY 97
TPR_1 pfam00515
Tetratricopeptide repeat;
7-37 5.73e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 5.73e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 544063449    7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 245-368 6.16e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 245 YFEKGDYNKCRELCEKAIEvgreNREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKcqqaek 320
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLK----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYpdspKAPDALLK------ 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 544063449 321 ilkeqerLAYINpdlaleeknkgnecFQKGDYPQAMKHYTEAIKRNPK 368
Cdd:COG1729   73 -------LGLSY--------------LELGDYDKARATLEELIKKYPD 99
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
379-473 6.16e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063449 379 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDvYQKALDLDSSCKEAADGYQRCMMAQYNRHDSP 458
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 544063449 459 EDVKRRAMADPEVQQ 473
Cdd:COG3063   80 AYLERALELDPSALR 94
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 205-234 9.12e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 9.12e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 544063449   205 KELGNDAYKKKDFDTALKHYDKAKELDPTN 234
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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