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Conserved domains on  [gi|556695497|ref|NP_001273332|]
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MHC class II transactivator isoform 3 [Homo sapiens]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 10061432)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
299-530 4.53e-65

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


:

Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 214.53  E-value: 4.53e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 299 SLHRAALS-DTVALWESLQQ---HGETKLLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTRS--SSEDTAGELPAVR 371
Cdd:cd00116   87 DLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRLEgaSCEALAKALRANR 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 372 DLKKLEFALGPVsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKL 451
Cdd:cd00116  166 DLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556695497 452 AEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRRCPHVETLAMWTPTIPF 530
Cdd:cd00116  242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELESLWVKDDSF 319
 
Name Accession Description Interval E-value
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
299-530 4.53e-65

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 214.53  E-value: 4.53e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 299 SLHRAALS-DTVALWESLQQ---HGETKLLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTRS--SSEDTAGELPAVR 371
Cdd:cd00116   87 DLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRLEgaSCEALAKALRANR 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 372 DLKKLEFALGPVsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKL 451
Cdd:cd00116  166 DLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556695497 452 AEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRRCPHVETLAMWTPTIPF 530
Cdd:cd00116  242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELESLWVKDDSF 319
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
400-521 1.28e-13

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 72.90  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 400 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNcICDVGAES 479
Cdd:COG5238  264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 556695497 480 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETL 521
Cdd:COG5238  340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
430-455 9.66e-05

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 39.31  E-value: 9.66e-05
                           10        20
                   ....*....|....*....|....*.
gi 556695497   430 LKSLETLNLSQNNITDLGAYKLAEAL 455
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEAL 26
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
401-450 7.71e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 37.22  E-value: 7.71e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 556695497  401 SLQHLDLdalSENKIGDEGVsqlsatFPQLKSLETLNLSQNN-ITDLGAYK 450
Cdd:pfam12799   2 NLEVLDL---SNNQITDIPP------LAKLPNLETLDLSGNNkITDLSDLA 43
 
Name Accession Description Interval E-value
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
299-530 4.53e-65

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 214.53  E-value: 4.53e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 299 SLHRAALS-DTVALWESLQQ---HGETKLLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTRS--SSEDTAGELPAVR 371
Cdd:cd00116   87 DLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRLEgaSCEALAKALRANR 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 372 DLKKLEFALGPVsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKL 451
Cdd:cd00116  166 DLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556695497 452 AEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRRCPHVETLAMWTPTIPF 530
Cdd:cd00116  242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELESLWVKDDSF 319
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
400-521 1.28e-13

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 72.90  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 400 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNcICDVGAES 479
Cdd:COG5238  264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 556695497 480 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETL 521
Cdd:COG5238  340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
403-538 2.90e-13

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 71.74  E-value: 2.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 403 QHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALpSLAASLLRLSLYNNCICDVGAESLAR 482
Cdd:COG5238  180 NSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEAL-KGNKSLTTLDLSNNQIGDEGVIALAE 258
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 483 VLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPF----SVQEHLQQ 538
Cdd:COG5238  259 ALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDegaiALAEGLQG 318
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
392-543 3.31e-13

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 71.74  E-value: 3.31e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 392 LVRILTAFSSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALpSLAASLLRLSLYNNC 471
Cdd:COG5238  284 LAKALQGNTTLTSLDL---SVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKAL-QENTTLHSLDLSDNQ 359
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556695497 472 ICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRcPHVETLAMWTPTIPFSVQEHLQQQDSRI 543
Cdd:COG5238  360 IGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQT-NRLHTLILDGNLIGAEAQQRLEQLLERI 430
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
396-521 2.73e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.93  E-value: 2.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 396 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNNITDLGAY-----KLaEALpslaasllrlSLYNN 470
Cdd:COG4886  109 LSNLTNLESLDL---SGNQLTD-----LPEELANLTNLKELDLSNNQLTDLPEPlgnltNL-KSL----------DLSNN 169
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 556695497 471 CICDVGAEslarvLPDMVSLRVMDVQYNKFTaagaqQLAASLRRCPHVETL 521
Cdd:COG4886  170 QLTDLPEE-----LGNLTNLKELDLSNNQIT-----DLPEPLGNLTNLEEL 210
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
410-521 3.68e-06

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 49.40  E-value: 3.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695497 410 LSENKIGDEGVSQLS-ATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLyNNCICDVGAESLARVLPDMV 488
Cdd:COG5238  158 LLGLAARLGLLAAISmAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLK-RNPIGDEGAEILAEALKGNK 236
                         90       100       110
                 ....*....|....*....|....*....|...
gi 556695497 489 SLRVMDVQYNKFTAAGAQQLAASLRRCPHVETL 521
Cdd:COG5238  237 SLTTLDLSNNQIGDEGVIALAEALKNNTTVETL 269
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
396-446 4.82e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.16  E-value: 4.82e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 556695497 396 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNNITDL 446
Cdd:COG4886  201 LGNLTNLEELDL---SGNQLTD-----LPEPLANLTNLETLDLSNNQLTDL 243
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
396-448 4.17e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 46.08  E-value: 4.17e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 556695497 396 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNNITDLGA 448
Cdd:COG4886  178 LGNLTNLKELDL---SNNQITD-----LPEPLGNLTNLEELDLSGNQLTDLPE 222
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
430-455 9.66e-05

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 39.31  E-value: 9.66e-05
                           10        20
                   ....*....|....*....|....*.
gi 556695497   430 LKSLETLNLSQNNITDLGAYKLAEAL 455
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEAL 26
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
489-513 1.53e-04

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 38.93  E-value: 1.53e-04
                           10        20
                   ....*....|....*....|....*
gi 556695497   489 SLRVMDVQYNKFTAAGAQQLAASLR 513
Cdd:smart00368   3 SLRELDLSNNKLGDEGARALAEALK 27
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
394-446 4.80e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 41.70  E-value: 4.80e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 556695497 394 RILTAFS-SLQHLDLdalSENKIGDegVSQLSAtfpqLKSLETLNLSQNNITDL 446
Cdd:cd21340  113 RSLAALSnSLRVLNI---SGNNIDS--LEPLAP----LRNLEQLDASNNQISDL 157
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
401-450 7.71e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 37.22  E-value: 7.71e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 556695497  401 SLQHLDLdalSENKIGDEGVsqlsatFPQLKSLETLNLSQNN-ITDLGAYK 450
Cdd:pfam12799   2 NLEVLDL---SNNQITDIPP------LAKLPNLETLDLSGNNkITDLSDLA 43
LRR_8 pfam13855
Leucine rich repeat;
400-446 1.14e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 556695497  400 SSLQHLDLDAlseNKIgdEGVSQlsATFPQLKSLETLNLSQNNITDL 446
Cdd:pfam13855   1 PNLRSLDLSN---NRL--TSLDD--GAFKGLSNLKVLDLSNNLLTTL 40
LRR_8 pfam13855
Leucine rich repeat;
397-443 1.59e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.12  E-value: 1.59e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556695497  397 TAFSSLQHL-DLDaLSENKIgdegvSQLSA-TFPQLKSLETLNLSQNNI 443
Cdd:pfam13855  19 GAFKGLSNLkVLD-LSNNLL-----TTLSPgAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
396-470 4.29e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.53  E-value: 4.29e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556695497 396 LTAFSSLQHLDLdalSENKIGDegvsqLSATFpQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNN 470
Cdd:COG4886  246 LGNLTNLEELDL---SNNQLTD-----LPPLA-NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLL 311
LRR_6 pfam13516
Leucine Rich repeat;
432-452 7.33e-03

Leucine Rich repeat;


Pssm-ID: 463907 [Multi-domain]  Cd Length: 24  Bit Score: 34.13  E-value: 7.33e-03
                          10        20
                  ....*....|....*....|.
gi 556695497  432 SLETLNLSQNNITDLGAYKLA 452
Cdd:pfam13516   4 HLTTLDLSDNDIGDEGAEALA 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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