|
Name |
Accession |
Description |
Interval |
E-value |
| ATF7IP_BD |
pfam16788 |
ATF-interacting protein binding domain; ATF7IP-BD is a short conserved region of activating ... |
563-774 |
5.01e-76 |
|
ATF-interacting protein binding domain; ATF7IP-BD is a short conserved region of activating transcription factor 7-interacting protein 1 found in higher eukaryotes. This domain appears to bind several key proteins such as TFIIE-alpha and TFIIE-beta as well the transcriptional regulator Sp1 which are part of the transcriptional machinery.
Pssm-ID: 465271 [Multi-domain] Cd Length: 214 Bit Score: 249.59 E-value: 5.01e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 563 NVQSKRRRYMEEeyeaeFQVKITAKGDINQKLQKVIQWLLEEKLCALQCAVFDKTLAELKTRVEKIECNKRHKTVLTELQ 642
Cdd:pfam16788 1 KENVKRMKTSEQ-----INENICVALEKQTALLEQVKHLIEQEICSINYKLFDKKLKELNERVEKTECRKKHEAIATELQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 643 AKIARLTKRFEAAKEDLKKrhehpPNPPVSPGKTVND--VNSNNNMSYRNAGTVRQMLESKRNVSESAPpsFQTPVNTVS 720
Cdd:pfam16788 76 AKIARLTKRFKAALEDLKK-----CLPPNSPSSNAASkvANSNTINLYRNAGSVRSMLESKRSVGESSP--FQPPEKASK 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 557357729 721 STNLVTPPAVVSSQPKLQTPVTSGSLT----ATSVLPAPNTATVV---ATTQVPSGNPQPT 774
Cdd:pfam16788 149 KINLTSPQNEVVSESNNQDDVMLISVEspnlTTPVTSNPTDTRKVtsgNSSNSPSAETEVM 209
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
319-549 |
1.69e-08 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 59.03 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 319 KNGADEKLEQIQSKDSLDEKNKADNNIDAN-EETLEtddtticsdrppEN-EKKVEEDIitelalgEDAISSSMEIDQGE 396
Cdd:PTZ00341 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDaEENVE------------ENvEENVEENV-------EENVEENVEENVEE 989
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 397 KNEDETSADLVETINENViEDNKSENILENTDSMETDEIIPILEKLAPSEDEltcfsktsllPIDETNPDLEEKMESSFG 476
Cdd:PTZ00341 990 NVEENVEENVEENIEENV-EENVEENIEENVEEYDEENVEEVEENVEEYDEE----------NVEEIEENAEENVEENIE 1058
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 557357729 477 SPSKQESSESLPKEAFLVLSDEEDISGEKDESEVISQNETCSPEVESNEKDNKPEE-EEQVIHEDDERPSEKNE 549
Cdd:PTZ00341 1059 ENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENaEENAEEYDDENPEEHNE 1132
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
665-1093 |
5.30e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.17 E-value: 5.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 665 HPPNPPVSPGKTvndvnsnnNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVVSSQPKLQTPVTSG 744
Cdd:PHA03247 2622 HAPDPPPPSPSP--------AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 745 SLTATSVLPAPNtatvvattQVPSGNPQPTISLQPLPvilhvPVAVSSQpqllQSHPGTLVTNQPsgnvefisvqsPPTV 824
Cdd:PHA03247 2694 SLTSLADPPPPP--------PTPEPAPHALVSATPLP-----PGPAAAR----QASPALPAAPAP-----------PAVP 2745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 825 SGltknPVSlpslpnPTKPNNVPSVPSPSIQRNPTASAAPLGTTLAVQAVPTAHSIVQATRTSLPTVGPSGLYSPSTNRG 904
Cdd:PHA03247 2746 AG----PAT------PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 905 PI--QMKIPISAFSTSSAAEQNSNTTPRIENQTNKTIDASVskkaadstsqcgkATGSdssgviDLTMDDEESGASQDPK 982
Cdd:PHA03247 2816 AAlpPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV-------------APGG------DVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 983 KLNHTPVSTMSSSqPVSRPLQPiQPAPPLQPSGVPTSGPSQTtihllPTAPTTVNVTHRPVTQVTTR-LPVPRAPANHQV 1061
Cdd:PHA03247 2877 APARPPVRRLARP-AVSRSTES-FALPPDQPERPPQPQAPPP-----PQPQPQPPPPPQPQPPPPPPpRPQPPLAPTTDP 2949
|
410 420 430
....*....|....*....|....*....|....
gi 557357729 1062 VYTTLPAPPAQAPLRGTVM--QAPAVRQVNPQNS 1093
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVpgRVAVPRFRVPQPA 2983
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
110-287 |
2.39e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 110 EPLSPHNITPEPVSKLPAEPVSGDPAPGDLDAGD------PASGVLASGDSTSGdPTSSEPSSSDAASGDATSGDAPSGD 183
Cdd:PHA03307 78 EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPsspdppPPTPPPASPPPSPA-PDLSEMLRPVGSPGPPPAASPPAAG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 184 VSPGDATSGDAT---ADDLSSGDPTSSDPI--PGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGD 258
Cdd:PHA03307 157 ASPAAVASDAASsrqAALPLSSPEETARAPssPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
|
170 180
....*....|....*....|....*....
gi 557357729 259 LSSSELASDDLATGELASDELTSESTFDR 287
Cdd:PHA03307 237 SDSSSSESSGCGWGPENECPLPRPAPITL 265
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
707-1025 |
5.80e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 707 SAPPSFQTPVNTVSSTNLVTP------PAVVSSQPKLQTPVTSGSLTATSVL--PAPNTATVVATTQVPSGNPQ------ 772
Cdd:pfam05109 422 SKAPESTTTSPTLNTTGFAAPntttglPSSTHVPTNLTAPASTGPTVSTADVtsPTPAGTTSGASPVTPSPSPRdngtes 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 773 --PTISLQPLPVILHVPVAVSSQPQLLQSHPGTlvTNQPSGNVEFISVQSPPTVSGLTKNPVSLPSLPNPTKPNNVPSVP 850
Cdd:pfam05109 502 kaPDMTSPTSAVTTPTPNATSPTPAVTTPTPNA--TSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSP 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 851 SPSIQR-NPTASAAPLGTTlAVQAVPTAHSIVQATRTSLPTVGPSGLYSPSTNRgpiQMKIPISAFSTSSAAEQNSNTTP 929
Cdd:pfam05109 580 TSAVTTpTPNATSPTVGET-SPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTG---QHNITSSSTSSMSLRPSSISETL 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 930 RIENQTNKT----IDASVSKKAADSTSQCGKAtgSDSSGVIDLTMDDEESGASQDPKKLNHTPVSTMSSSQPVSRPLQPI 1005
Cdd:pfam05109 656 SPSTSDNSTshmpLLTSAHPTGGENITQVTPA--STSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPK 733
|
330 340
....*....|....*....|
gi 557357729 1006 QPAPPLQPSGVPTSGPSQTT 1025
Cdd:pfam05109 734 NATSPQAPSGQKTAVPTVTS 753
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
122-433 |
8.44e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.83 E-value: 8.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 122 VSKLPAEPVSGDPAPGDLDA------GDPASGVLASGDSTSGDPTSSEP-SSSDAASGDATSGDAPSGDVSPGDATSGDA 194
Cdd:NF033609 544 VPEQPDEPGEIEPIPEDSDSdpgsdsGSDSSNSDSGSDSGSDSTSDSGSdSASDSDSASDSDSASDSDSASDSDSASDSD 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 195 TADDLSSGDPTSSDPIPGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATGEL 274
Cdd:NF033609 624 SASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 275 ASDELTSESTFDRTFEPKSVPVCEPVPEIDNiEPSSNKDDDFLEKNGADEKLEQIQSKDSlDEKNKADNNIDANEETLET 354
Cdd:NF033609 704 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSD 781
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 557357729 355 DDTTICSDRPPENEKKVEEDIITELALGEDAISSSmEIDQGEKNEDETSADLVETINENVIEDNKSENILENTDSMETD 433
Cdd:NF033609 782 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESD 859
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
347-605 |
8.01e-03 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 40.49 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 347 ANEETLETDDTTICSDRPPENEKKVEEDI-ITELALGEDAISSSMEIDQGE--------KNEDETSADLVETINENVIED 417
Cdd:COG5192 395 VDRESSEIDNVGRKTRRQPTGKAIAEETSrEDELSFDDSDVSTSDENEDVDftgkkgaiNNEDESDNEEVAFDSDSQFDE 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 418 NKSE--------NILENTDSMETDEIIPIL---EKLAPSE--------------------DELTCFSKTSLLPIDETNPD 466
Cdd:COG5192 475 SEGNlrwkeglaSKLAYSQSGKRGRNIQKIfydESLSPEEcieeykgesakssesdlvvqDEPEDFFDVSKVANESISSN 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 467 LEEKMESSFGSPSKQESSESLPKEAFLVLSDEEDISGEKdesEVISQNEtcspevESNEKDNKPEEEEQvihEDDERPSE 546
Cdd:COG5192 555 HEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEE---ELIQDDE------KGNFEDLEDEENSS---DNEMEESR 622
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 557357729 547 KNEFSRRKRSKSEDMDNVQSKRRRYMEEEyEAEFQVKITAKGDINqklQKVIQWLLEEK 605
Cdd:COG5192 623 GSSVTAENEESADEVDYETEREENARKKE-ELRGNFELEERGDPE---KKDVDWYTEEK 677
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ATF7IP_BD |
pfam16788 |
ATF-interacting protein binding domain; ATF7IP-BD is a short conserved region of activating ... |
563-774 |
5.01e-76 |
|
ATF-interacting protein binding domain; ATF7IP-BD is a short conserved region of activating transcription factor 7-interacting protein 1 found in higher eukaryotes. This domain appears to bind several key proteins such as TFIIE-alpha and TFIIE-beta as well the transcriptional regulator Sp1 which are part of the transcriptional machinery.
Pssm-ID: 465271 [Multi-domain] Cd Length: 214 Bit Score: 249.59 E-value: 5.01e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 563 NVQSKRRRYMEEeyeaeFQVKITAKGDINQKLQKVIQWLLEEKLCALQCAVFDKTLAELKTRVEKIECNKRHKTVLTELQ 642
Cdd:pfam16788 1 KENVKRMKTSEQ-----INENICVALEKQTALLEQVKHLIEQEICSINYKLFDKKLKELNERVEKTECRKKHEAIATELQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 643 AKIARLTKRFEAAKEDLKKrhehpPNPPVSPGKTVND--VNSNNNMSYRNAGTVRQMLESKRNVSESAPpsFQTPVNTVS 720
Cdd:pfam16788 76 AKIARLTKRFKAALEDLKK-----CLPPNSPSSNAASkvANSNTINLYRNAGSVRSMLESKRSVGESSP--FQPPEKASK 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 557357729 721 STNLVTPPAVVSSQPKLQTPVTSGSLT----ATSVLPAPNTATVV---ATTQVPSGNPQPT 774
Cdd:pfam16788 149 KINLTSPQNEVVSESNNQDDVMLISVEspnlTTPVTSNPTDTRKVtsgNSSNSPSAETEVM 209
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
319-549 |
1.69e-08 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 59.03 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 319 KNGADEKLEQIQSKDSLDEKNKADNNIDAN-EETLEtddtticsdrppEN-EKKVEEDIitelalgEDAISSSMEIDQGE 396
Cdd:PTZ00341 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDaEENVE------------ENvEENVEENV-------EENVEENVEENVEE 989
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 397 KNEDETSADLVETINENViEDNKSENILENTDSMETDEIIPILEKLAPSEDEltcfsktsllPIDETNPDLEEKMESSFG 476
Cdd:PTZ00341 990 NVEENVEENVEENIEENV-EENVEENIEENVEEYDEENVEEVEENVEEYDEE----------NVEEIEENAEENVEENIE 1058
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 557357729 477 SPSKQESSESLPKEAFLVLSDEEDISGEKDESEVISQNETCSPEVESNEKDNKPEE-EEQVIHEDDERPSEKNE 549
Cdd:PTZ00341 1059 ENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENaEENAEEYDDENPEEHNE 1132
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
665-1093 |
5.30e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.17 E-value: 5.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 665 HPPNPPVSPGKTvndvnsnnNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVVSSQPKLQTPVTSG 744
Cdd:PHA03247 2622 HAPDPPPPSPSP--------AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 745 SLTATSVLPAPNtatvvattQVPSGNPQPTISLQPLPvilhvPVAVSSQpqllQSHPGTLVTNQPsgnvefisvqsPPTV 824
Cdd:PHA03247 2694 SLTSLADPPPPP--------PTPEPAPHALVSATPLP-----PGPAAAR----QASPALPAAPAP-----------PAVP 2745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 825 SGltknPVSlpslpnPTKPNNVPSVPSPSIQRNPTASAAPLGTTLAVQAVPTAHSIVQATRTSLPTVGPSGLYSPSTNRG 904
Cdd:PHA03247 2746 AG----PAT------PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 905 PI--QMKIPISAFSTSSAAEQNSNTTPRIENQTNKTIDASVskkaadstsqcgkATGSdssgviDLTMDDEESGASQDPK 982
Cdd:PHA03247 2816 AAlpPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV-------------APGG------DVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 983 KLNHTPVSTMSSSqPVSRPLQPiQPAPPLQPSGVPTSGPSQTtihllPTAPTTVNVTHRPVTQVTTR-LPVPRAPANHQV 1061
Cdd:PHA03247 2877 APARPPVRRLARP-AVSRSTES-FALPPDQPERPPQPQAPPP-----PQPQPQPPPPPQPQPPPPPPpRPQPPLAPTTDP 2949
|
410 420 430
....*....|....*....|....*....|....
gi 557357729 1062 VYTTLPAPPAQAPLRGTVM--QAPAVRQVNPQNS 1093
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVpgRVAVPRFRVPQPA 2983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-683 |
1.44e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 319 KNGADEKLEQIQSKDSLDEKNKADNNIDANEETLETDDTTICSD--RPPENEKKVEEDIITELALGEDAISSSMEIDQGE 396
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEeaKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 397 KNEDETSADLVETINE--------NVIEDNKSENILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLLPIDEtNPDLE 468
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEakkadeakKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE-EARIE 1595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 469 EKMEssFGSPSKQESSESLPKEAFLVLSDEEDISGEKDESEVISQNETCSPEVESNEKDNKPEEEEQVIHEDDERPSEKN 548
Cdd:PTZ00121 1596 EVMK--LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 549 EFSRRKRSKSEDMDNVQSKRRRYMEEEYEAEFQVKITAKGDInQKLQKVIQWLLEEKLCALQC---AVFDKTLAElKTRV 625
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-KKAEELKKAEEENKIKAEEAkkeAEEDKKKAE-EAKK 1751
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 557357729 626 EKIECNKRHKTVLTELQAKIARLTKRFEAAKEDLKKRHEhppNPPVSPGKTVNDVNSN 683
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE---KRRMEVDKKIKDIFDN 1806
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
110-287 |
2.39e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 110 EPLSPHNITPEPVSKLPAEPVSGDPAPGDLDAGD------PASGVLASGDSTSGdPTSSEPSSSDAASGDATSGDAPSGD 183
Cdd:PHA03307 78 EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPsspdppPPTPPPASPPPSPA-PDLSEMLRPVGSPGPPPAASPPAAG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 184 VSPGDATSGDAT---ADDLSSGDPTSSDPI--PGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGD 258
Cdd:PHA03307 157 ASPAAVASDAASsrqAALPLSSPEETARAPssPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
|
170 180
....*....|....*....|....*....
gi 557357729 259 LSSSELASDDLATGELASDELTSESTFDR 287
Cdd:PHA03307 237 SDSSSSESSGCGWGPENECPLPRPAPITL 265
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
142-291 |
5.12e-05 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 47.28 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 142 GDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDvsPGDATSGDATADDLSS-------------------- 201
Cdd:PRK13108 278 GREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVG--PGEPNQPDDVAEAVKAevaevtdevaaesvvqvadr 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 202 -GDPTSSDPIPGEPVPVEPISGDCAADDIASSEitsVDLASGAPASTDPAsdDLASGDLSSSELASDDLATGELAS---D 277
Cdd:PRK13108 356 dGESTPAVEETSEADIEREQPGDLAGQAPAAHQ---VDAEAASAAPEEPA--ALASEAHDETEPEVPEKAAPIPDPakpD 430
|
170
....*....|....
gi 557357729 278 ELTSESTFDRTFEP 291
Cdd:PRK13108 431 ELAVAGPGDDPAEP 444
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
707-1025 |
5.80e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 707 SAPPSFQTPVNTVSSTNLVTP------PAVVSSQPKLQTPVTSGSLTATSVL--PAPNTATVVATTQVPSGNPQ------ 772
Cdd:pfam05109 422 SKAPESTTTSPTLNTTGFAAPntttglPSSTHVPTNLTAPASTGPTVSTADVtsPTPAGTTSGASPVTPSPSPRdngtes 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 773 --PTISLQPLPVILHVPVAVSSQPQLLQSHPGTlvTNQPSGNVEFISVQSPPTVSGLTKNPVSLPSLPNPTKPNNVPSVP 850
Cdd:pfam05109 502 kaPDMTSPTSAVTTPTPNATSPTPAVTTPTPNA--TSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSP 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 851 SPSIQR-NPTASAAPLGTTlAVQAVPTAHSIVQATRTSLPTVGPSGLYSPSTNRgpiQMKIPISAFSTSSAAEQNSNTTP 929
Cdd:pfam05109 580 TSAVTTpTPNATSPTVGET-SPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTG---QHNITSSSTSSMSLRPSSISETL 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 930 RIENQTNKT----IDASVSKKAADSTSQCGKAtgSDSSGVIDLTMDDEESGASQDPKKLNHTPVSTMSSSQPVSRPLQPI 1005
Cdd:pfam05109 656 SPSTSDNSTshmpLLTSAHPTGGENITQVTPA--STSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPK 733
|
330 340
....*....|....*....|
gi 557357729 1006 QPAPPLQPSGVPTSGPSQTT 1025
Cdd:pfam05109 734 NATSPQAPSGQKTAVPTVTS 753
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
122-433 |
8.44e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.83 E-value: 8.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 122 VSKLPAEPVSGDPAPGDLDA------GDPASGVLASGDSTSGDPTSSEP-SSSDAASGDATSGDAPSGDVSPGDATSGDA 194
Cdd:NF033609 544 VPEQPDEPGEIEPIPEDSDSdpgsdsGSDSSNSDSGSDSGSDSTSDSGSdSASDSDSASDSDSASDSDSASDSDSASDSD 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 195 TADDLSSGDPTSSDPIPGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATGEL 274
Cdd:NF033609 624 SASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 275 ASDELTSESTFDRTFEPKSVPVCEPVPEIDNiEPSSNKDDDFLEKNGADEKLEQIQSKDSlDEKNKADNNIDANEETLET 354
Cdd:NF033609 704 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSD 781
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 557357729 355 DDTTICSDRPPENEKKVEEDIITELALGEDAISSSmEIDQGEKNEDETSADLVETINENVIEDNKSENILENTDSMETD 433
Cdd:NF033609 782 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESD 859
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
317-599 |
8.74e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 317 LEKNGADEKLEQIQSKDSLDEKNKADNNIDANEETLETDDTTicsdRPPENEKKVEEDIITELALGEDAISSSMEIDQGE 396
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL----KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 397 KN-------EDETSADLVETINENVIEDNKSENilENTDSMETDEIIPilEKLAPSEDELTCFSKTSLLPIDETNPDLEE 469
Cdd:PTZ00121 1756 KKkiahlkkEEEKKAEEIRKEKEAVIEEELDEE--DEKRRMEVDKKIK--DIFDNFANIIEGGKEGNLVINDSKEMEDSA 1831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 470 KMESSFGSPSKQESSESLPKEAFlvlsDEEDISGEKDESEVISqnetcspeveSNEKDNKPEEEEQVIHEDDERPSEKNE 549
Cdd:PTZ00121 1832 IKEVADSKNMQLEEADAFEKHKF----NKNNENGEDGNKEADF----------NKEKDLKEDDEEEIEEADEIEKIDKDD 1897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 557357729 550 FSRRKRSKSEDMDNVQSKRRRYMEEEYEaefqvkitaKGDINQKLQKVIQ 599
Cdd:PTZ00121 1898 IEREIPNNNMAGKNNDIIDDKLDKDEYI---------KRDAEETREEIIK 1938
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
684-1074 |
9.47e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 684 NNMSYRNAGTVRQMLESKRNVSES---APPSFQTPVNTVSSTNLVTPPAVVSSQPKLQTPVTSGSLTATSVLPAPNTATV 760
Cdd:pfam03154 153 DNESDSDSSAQQQILQTQPPVLQAqsgAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQ 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 761 VATTQVPSGNPQPTISLQPLPV---------------ILHVPvaVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPTVS 825
Cdd:pfam03154 233 QTPTLHPQRLPSPHPPLQPMTQppppsqvspqplpqpSLHGQ--MPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVP 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 826 GLTKNPVSLPSLPNPTKPNNVPSVPSPSIQRNPTASAAPLGT-------TLAVQAVPTAHSIVQATRTSlptvGPSGLYS 898
Cdd:pfam03154 311 PGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMphikpppTTPIPQLPNPQSHKHPPHLS----GPSPFQM 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 899 PSTNRGPIQMKiPISAFSTSSAAeqNSNTTPRIENQTNKTIDASVSKKAADSTSQCGKATGSDSSgvidlTMDDEESGAS 978
Cdd:pfam03154 387 NSNLPPPPALK-PLSSLSTHHPP--SAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHP-----PTSGLHQVPS 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 979 QDPkklnHTPVSTMSSSQPVSRPlqPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPAN 1058
Cdd:pfam03154 459 QSP----FPQHPFVPGGPPPITP--PSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPES 532
|
410
....*....|....*.
gi 557357729 1059 hqvvyttlPAPPAQAP 1074
Cdd:pfam03154 533 --------PPPPPRSP 540
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
366-662 |
1.01e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 366 ENEKKVEEDIITELALGEDAISSSMEIDQGEKNEDETSADLVETINENVIEDNKSENILENTDS--METDEIIPILEKLA 443
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKevKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 444 PSEDELTCFSKTSLLPIDETNPDLEEKMESSFGSPSKQESSESLPKEA--------FLVLSDEEDISGEKDESEVISQNE 515
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAeeyiklseFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 516 TCSPEVESNEKD----NKPEEEEQVIHEDDERPSEKNEFSRRKRSKSEDMDNVQSKRRRYMEEEYEAEFQVKITAKGDIN 591
Cdd:PRK03918 325 GIEERIKELEEKeerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 557357729 592 QKLQKVIQWL--LEEKLCALQCAVFDKTLAELKTRVEKIECNKRH-KTVLTELQAKIARLTKR---FEAAKEDLKKR 662
Cdd:PRK03918 405 EEISKITARIgeLKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrKELLEEYTAELKRIEKElkeIEEKERKLRKE 481
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
126-252 |
1.19e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 126 PAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDVSPGDATSGDATADDLS---SG 202
Cdd:PRK07764 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQaaqGA 728
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 557357729 203 DPTSSDPIPGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASD 252
Cdd:PRK07764 729 SAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSP 778
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
707-1016 |
1.87e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.62 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 707 SAPPSFQTPVNTVSSTNLVTPPAVVSSQPKLQTPVTSGSLTATSVLPAPNTATVVATTQVPSGNPQPTISLQPLPVILHV 786
Cdd:PHA03247 2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 787 PVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSP--PTVSGLTKNPVSLPSLPNPTKPNNVPSVPSPSIQRNPTASA-- 862
Cdd:PHA03247 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAParPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPqp 2923
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 863 -----------------APLGTTLAVQAVPTAHSI-------------VQATRTSLPTVGPSGLYSPSTNRGPIQMKIP- 911
Cdd:PHA03247 2924 ppppqpqppppppprpqPPLAPTTDPAGAGEPSGAvpqpwlgalvpgrVAVPRFRVPQPAPSREAPASSTPPLTGHSLSr 3003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 912 ISAFSTSSAAEQNSNTTPRIENQtnkTIDASVSKKAADSTSqcgkATGSDsSGVIDLTMDDEESGASQDPkkLNHTPVST 991
Cdd:PHA03247 3004 VSSWASSLALHEETDPPPVSLKQ---TLWPPDDTEDSDADS----LFDSD-SERSDLEALDPLPPEPHDP--FAHEPDPA 3073
|
330 340
....*....|....*....|....*
gi 557357729 992 MSSSQPVSRPLQPIQPaPPLQPSGV 1016
Cdd:PHA03247 3074 TPEAGARESPSSQFGP-PPLSANAA 3097
|
|
| PHA02664 |
PHA02664 |
hypothetical protein; Provisional |
126-282 |
2.85e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 177447 Cd Length: 534 Bit Score: 41.52 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 126 PAEP----VSGDPApgdLDAGDPASGVLASGDSTSGdptssePSSSDAASGDATSgdapsgdvSPGDATSGDATADDLSS 201
Cdd:PHA02664 368 PAEPaalfVDGNEV---IAAGAAAAMIAAAERAANG------ARGSPMAAPEEGR--------AAAAAAAANAPADQDVE 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 202 GDPtSSDPIPGEPVPVEPISGDCAADDIASSEIT-----------SVDLASGAPASTDPASDDLASGDLSSSELASDDLA 270
Cdd:PHA02664 431 AEA-HDEFDQDPGAPAHADRADSDEDDMDEQESGderadgeddsdSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDGG 509
|
170
....*....|..
gi 557357729 271 TGELASDELTSE 282
Cdd:PHA02664 510 VGQAIEEEEEEE 521
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
121-313 |
3.30e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.76 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 121 PVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPtSSEPSSSDAASGDATSGDAPSGDVSPgdATSGDATADDLS 200
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAA-GAALAPKAAAAAAATRAEAPPAAPAP--PATADRGDDAAD 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 201 SGDPTSSDpipgEPVPVEPisgDCAADDIASSEITSVDLASGAPASTDPASddlASGDLSSSELASDDLATGELASDELT 280
Cdd:PRK07003 445 GDAPVPAK----ANARASA---DSRCDERDAQPPADSGSASAPASDAPPDA---AFEPAPRAAAPSAATPAAVPDARAPA 514
|
170 180 190
....*....|....*....|....*....|...
gi 557357729 281 SESTFDRtfepkSVPVCEPVPEIDNIEPSSNKD 313
Cdd:PRK07003 515 AASREDA-----PAAAAPPAPEARPPTPAAAAP 542
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
654-1075 |
3.54e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 654 AAKEDLKKRHEHPPNPPVSPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTvSSTNLVTPPAVVSS 733
Cdd:PHA03307 56 VAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT-PPPASPPPSPAPDL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 734 QPKLQTPVTSGSLTATSVLPAPNTATVVATTQVPSGNPQPTISLQPLPVilHVPVAVSSQPQLLQSHPGTLVTNQPSGNV 813
Cdd:PHA03307 135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA--RAPSSPPAEPPPSTPPAAASPRPPRRSSP 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 814 EFISVQSPPtvsgltknpvslPSLPNPTKPNNVPSVPSPSIQRNPTASAAPLGTTlavqAVPTAHSIVQATR--TSLPTV 891
Cdd:PHA03307 213 ISASASSPA------------PAPGRSAADDAGASSSDSSSSESSGCGWGPENEC----PLPRPAPITLPTRiwEASGWN 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 892 GPSGLYSPSTNRGPIQMKIPISAFSTSSAAEqnSNTTPRIENQTNKTIDASVSKKAADSTSQCGKATGSDSSgvidltmd 971
Cdd:PHA03307 277 GPSSRPGPASSSSSPRERSPSPSPSSPGSGP--APSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPS-------- 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 972 DEESGASQDPkklnhtPVSTMSSSQPVSRPLQPIQPAPPlQPSGVPTSgpsqttihllPTAPTTVNVTHRPvTQVTTRLP 1051
Cdd:PHA03307 347 PSRSPSPSRP------PPPADPSSPRKRPRPSRAPSSPA-ASAGRPTR----------RRARAAVAGRARR-RDATGRFP 408
|
410 420
....*....|....*....|....
gi 557357729 1052 VPRAPANHQVVYTTLPAPPAQAPL 1075
Cdd:PHA03307 409 AGRPRPSPLDAGAASGAFYARYPL 432
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
991-1090 |
4.24e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 41.30 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 991 TMSSSQPVSRPLQPI--QPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRApanhqvvyttLPA 1068
Cdd:PRK14971 368 DASGGRGPKQHIKPVftQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA----------VPV 437
|
90 100
....*....|....*....|..
gi 557357729 1069 PPAQAPLRGTVMQAPAVRQVNP 1090
Cdd:PRK14971 438 NPPSTAPQAVRPAQFKEEKKIP 459
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
707-1083 |
5.64e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 40.71 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 707 SAPPSFQTPVNTVSSTNLVTPPAVVSSQPK---LQTPVTSGSLTATSVLPAPNTATvvattqvpsgnpqptiSLQPLPVI 783
Cdd:pfam17823 64 TAAPAPVTLTKGTSAAHLNSTEVTAEHTPHgtdLSEPATREGAADGAASRALAAAA----------------SSSPSSAA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 784 LHVPVAVSSQPQLLQSHPGTLVTNQPsgnvefiSVQSPPTVSGLTKNPVSLPSLPNPTKPNNVPSVPSPSIQRNPTASAA 863
Cdd:pfam17823 128 QSLPAAIAALPSEAFSAPRAAACRAN-------ASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAAS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 864 PLGTTLavqaVPTAHSIVQATRTSLPtvgpsglyspstnrgpiqmkipisAFSTSSAAEQNSNTTPRienqtnkTIDASV 943
Cdd:pfam17823 201 SAPATL----TPARGISTAATATGHP------------------------AAGTALAAVGNSSPAAG-------TVTAAV 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 944 SKKAADSTSQCGKATGSDSSGVIDLTMDDEesgASQDPKKLNHTPVSTMSSSQ-PVSRP------LQPIQPAPPLQPSGV 1016
Cdd:pfam17823 246 GTVTPAALATLAAAAGTVASAAGTINMGDP---HARRLSPAKHMPSDTMARNPaAPMGAqaqgpiIQVSTDQPVHNTAGE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 1017 PTSGPSQTTihLLPTAPTTVNVTHRPV---TQVTTR---------LPVPRAPANHQVVYTTLPAP--PAQAPLRGTVMQA 1082
Cdd:pfam17823 323 PTPSPSNTT--LEPNTPKSVASTNLAVvttTKAQAKepsaspvpvLHTSMIPEVEATSPTTQPSPllPTQGAAGPGILLA 400
|
.
gi 557357729 1083 P 1083
Cdd:pfam17823 401 P 401
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
347-605 |
8.01e-03 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 40.49 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 347 ANEETLETDDTTICSDRPPENEKKVEEDI-ITELALGEDAISSSMEIDQGE--------KNEDETSADLVETINENVIED 417
Cdd:COG5192 395 VDRESSEIDNVGRKTRRQPTGKAIAEETSrEDELSFDDSDVSTSDENEDVDftgkkgaiNNEDESDNEEVAFDSDSQFDE 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 418 NKSE--------NILENTDSMETDEIIPIL---EKLAPSE--------------------DELTCFSKTSLLPIDETNPD 466
Cdd:COG5192 475 SEGNlrwkeglaSKLAYSQSGKRGRNIQKIfydESLSPEEcieeykgesakssesdlvvqDEPEDFFDVSKVANESISSN 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 467 LEEKMESSFGSPSKQESSESLPKEAFLVLSDEEDISGEKdesEVISQNEtcspevESNEKDNKPEEEEQvihEDDERPSE 546
Cdd:COG5192 555 HEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEE---ELIQDDE------KGNFEDLEDEENSS---DNEMEESR 622
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 557357729 547 KNEFSRRKRSKSEDMDNVQSKRRRYMEEEyEAEFQVKITAKGDINqklQKVIQWLLEEK 605
Cdd:COG5192 623 GSSVTAENEESADEVDYETEREENARKKE-ELRGNFELEERGDPE---KKDVDWYTEEK 677
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
119-268 |
8.76e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.15 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557357729 119 PEPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSgdvSPGDATSGDATADD 198
Cdd:PHA03307 205 RPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT---RIWEASGWNGPSSR 281
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 557357729 199 LSSGDPTSSDPIP-GEPVPVEPISGDCAADDIASSEITSVDlaSGAPASTDPASDdlASGDLSSSELASDD 268
Cdd:PHA03307 282 PGPASSSSSPRERsPSPSPSSPGSGPAPSSPRASSSSSSSR--ESSSSSTSSSSE--SSRGAAVSPGPSPS 348
|
|
|