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Conserved domains on  [gi|558757319|ref|NP_001273934|]
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sushi domain-containing protein 3 isoform b [Homo sapiens]

Protein Classification

CCP domain-containing protein( domain architecture ID 10034019)

complement control protein (CCP) domain-containing proteins are important as cytokine receptors and in neurotransmission, cell adhesion, blood clotting, extracellular matrix formation, hemoglobin metabolism and development, and in the vertebrate complement system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 19-79 1.45e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 44.38  E-value: 1.45e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558757319  19 CAKLRLPPQATFQVLRGNgASVGTVLMFRCPSNHQMVGSGLLTCTWKGsiaEWSSGSPVCK 79
Cdd:cd00033    1 CPPPPVPENGTVTGSKGS-YSYGSTVTYSCNEGYTLVGSSTITCTENG---GWSPPPPTCE 57
 
Name Accession Description Interval E-value
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 19-79 1.45e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 44.38  E-value: 1.45e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558757319  19 CAKLRLPPQATFQVLRGNgASVGTVLMFRCPSNHQMVGSGLLTCTWKGsiaEWSSGSPVCK 79
Cdd:cd00033    1 CPPPPVPENGTVTGSKGS-YSYGSTVTYSCNEGYTLVGSSTITCTENG---GWSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
19-78 2.20e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 2.20e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319   19 CAKLRLPPQATFQVLRgNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSiaeWSSGSPVC 78
Cdd:pfam00084   1 CPPPPDIPNGKVSATK-NEYNYGASVSYECDPGYRLVGSPTITCQEDGT---WSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 19-78 6.12e-05

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 39.82  E-value: 6.12e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319    19 CAKLRLPPQATFQVLRGNgASVGTVLMFRCPSNHQMVGSGLLTCTWKGSiaeWSSGSPVC 78
Cdd:smart00032   1 CPPPPDIENGTVTSSSGT-YSYGDTVTYSCDPGYTLIGSSTITCLENGT---WSPPPPTC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 8-90 1.23e-03

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 39.25  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319   8 MEWEIPEIICTCAKLRLPPQATFQvlRGNGA----SVGTVLMFRCPSNHQMVGSGLLTCtwkgSIAEWSSgSPVCKLVP- 82
Cdd:PHA02927 134 MVWNPEAPICESVKCQSPPSISNG--RHNGYedfyTDGSVVTYSCNSGYSLIGNSGVLC----SGGEWSD-PPTCQIVKc 206

                         90
                 ....*....|....*
gi 558757319  83 PHETF-------GFK 90
Cdd:PHA02927 207 PHPTIsngylssGFK 221
 
Name Accession Description Interval E-value
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 19-79 1.45e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 44.38  E-value: 1.45e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558757319  19 CAKLRLPPQATFQVLRGNgASVGTVLMFRCPSNHQMVGSGLLTCTWKGsiaEWSSGSPVCK 79
Cdd:cd00033    1 CPPPPVPENGTVTGSKGS-YSYGSTVTYSCNEGYTLVGSSTITCTENG---GWSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
19-78 2.20e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 2.20e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319   19 CAKLRLPPQATFQVLRgNGASVGTVLMFRCPSNHQMVGSGLLTCTWKGSiaeWSSGSPVC 78
Cdd:pfam00084   1 CPPPPDIPNGKVSATK-NEYNYGASVSYECDPGYRLVGSPTITCQEDGT---WSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 19-78 6.12e-05

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 39.82  E-value: 6.12e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319    19 CAKLRLPPQATFQVLRGNgASVGTVLMFRCPSNHQMVGSGLLTCTWKGSiaeWSSGSPVC 78
Cdd:smart00032   1 CPPPPDIENGTVTSSSGT-YSYGDTVTYSCDPGYTLIGSSTITCLENGT---WSPPPPTC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 8-90 1.23e-03

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 39.25  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558757319   8 MEWEIPEIICTCAKLRLPPQATFQvlRGNGA----SVGTVLMFRCPSNHQMVGSGLLTCtwkgSIAEWSSgSPVCKLVP- 82
Cdd:PHA02927 134 MVWNPEAPICESVKCQSPPSISNG--RHNGYedfyTDGSVVTYSCNSGYSLIGNSGVLC----SGGEWSD-PPTCQIVKc 206

                         90
                 ....*....|....*
gi 558757319  83 PHETF-------GFK 90
Cdd:PHA02927 207 PHPTIsngylssGFK 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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