|
Name |
Accession |
Description |
Interval |
E-value |
| KRAB super family |
cl42959 |
krueppel associated box; |
1-32 |
7.44e-11 |
|
krueppel associated box; The actual alignment was detected with superfamily member smart00349:
Pssm-ID: 214630 [Multi-domain] Cd Length: 61 Bit Score: 57.60 E-value: 7.44e-11
10 20 30
....*....|....*....|....*....|..
gi 584277082 1 MLENYRNLVSLGVSISNPDLVTSLEQRKEPYN 32
Cdd:smart00349 30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
193-354 |
2.27e-07 |
|
FOG: Zn-finger [General function prediction only]; :
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 52.78 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 193 KFYKCEECGKGFTRSSHLTKHKR--IHTGE--KPYIC--EKCGKAFNQSSTLNLHKRIHSAQKYYKCEEC-------GKA 259
Cdd:COG5048 288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSISPAKEKLLnssskfsPLL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 260 FKWSSSLNEHKRIHAGEKPFSCE--ECGNVFTTSSDFAKHKRIHTGEKPY--KCEECGKSFNRSTTLTTHKRIHTGEKPY 335
Cdd:COG5048 368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
|
170
....*....|....*....
gi 584277082 336 TCEECGKAFNWSSTLNVHK 354
Cdd:COG5048 448 LCSILKSFRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
290-442 |
7.62e-07 |
|
FOG: Zn-finger [General function prediction only]; :
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 51.24 E-value: 7.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 290 TSSDFAKHKRIHTgekPYKCEECGKSFNRSTTLTTHKR--IHTGE--KPYTCEE--CGKAFNWSSTLNVHKRIHSGKNPY 363
Cdd:COG5048 276 NESDSSSEKGFSL---PIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPA 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 364 KC--EDCGKAFKVFAN-----LHNHKKIHTGEKPYIC--KQCGKAFKQSSHLNKHKKIHTVDKPY--KCKECGKAFKQYS 432
Cdd:COG5048 353 KEklLNSSSKFSPLLNneppqSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHY 432
|
170
....*....|
gi 584277082 433 NLPQHKRTHT 442
Cdd:COG5048 433 NLIPHKKIHT 442
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
153-177 |
3.74e-03 |
|
Zinc-finger double domain; :
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 34.65 E-value: 3.74e-03
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| KRAB |
smart00349 |
krueppel associated box; |
1-32 |
7.44e-11 |
|
krueppel associated box;
Pssm-ID: 214630 [Multi-domain] Cd Length: 61 Bit Score: 57.60 E-value: 7.44e-11
10 20 30
....*....|....*....|....*....|..
gi 584277082 1 MLENYRNLVSLGVSISNPDLVTSLEQRKEPYN 32
Cdd:smart00349 30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
193-354 |
2.27e-07 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 52.78 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 193 KFYKCEECGKGFTRSSHLTKHKR--IHTGE--KPYIC--EKCGKAFNQSSTLNLHKRIHSAQKYYKCEEC-------GKA 259
Cdd:COG5048 288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSISPAKEKLLnssskfsPLL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 260 FKWSSSLNEHKRIHAGEKPFSCE--ECGNVFTTSSDFAKHKRIHTGEKPY--KCEECGKSFNRSTTLTTHKRIHTGEKPY 335
Cdd:COG5048 368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
|
170
....*....|....*....
gi 584277082 336 TCEECGKAFNWSSTLNVHK 354
Cdd:COG5048 448 LCSILKSFRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
290-442 |
7.62e-07 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 51.24 E-value: 7.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 290 TSSDFAKHKRIHTgekPYKCEECGKSFNRSTTLTTHKR--IHTGE--KPYTCEE--CGKAFNWSSTLNVHKRIHSGKNPY 363
Cdd:COG5048 276 NESDSSSEKGFSL---PIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPA 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 364 KC--EDCGKAFKVFAN-----LHNHKKIHTGEKPYIC--KQCGKAFKQSSHLNKHKKIHTVDKPY--KCKECGKAFKQYS 432
Cdd:COG5048 353 KEklLNSSSKFSPLLNneppqSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHY 432
|
170
....*....|
gi 584277082 433 NLPQHKRTHT 442
Cdd:COG5048 433 NLIPHKKIHT 442
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
405-430 |
2.35e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.12 E-value: 2.35e-04
10 20
....*....|....*....|....*.
gi 584277082 405 HLNKHKKIHTVDKPYKCKECGKAFKQ 430
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
293-318 |
5.05e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.35 E-value: 5.05e-04
10 20
....*....|....*....|....*.
gi 584277082 293 DFAKHKRIHTGEKPYKCEECGKSFNR 318
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
153-177 |
3.74e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 34.65 E-value: 3.74e-03
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| KRAB |
smart00349 |
krueppel associated box; |
1-32 |
7.44e-11 |
|
krueppel associated box;
Pssm-ID: 214630 [Multi-domain] Cd Length: 61 Bit Score: 57.60 E-value: 7.44e-11
10 20 30
....*....|....*....|....*....|..
gi 584277082 1 MLENYRNLVSLGVSISNPDLVTSLEQRKEPYN 32
Cdd:smart00349 30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
193-354 |
2.27e-07 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 52.78 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 193 KFYKCEECGKGFTRSSHLTKHKR--IHTGE--KPYIC--EKCGKAFNQSSTLNLHKRIHSAQKYYKCEEC-------GKA 259
Cdd:COG5048 288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSISPAKEKLLnssskfsPLL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 260 FKWSSSLNEHKRIHAGEKPFSCE--ECGNVFTTSSDFAKHKRIHTGEKPY--KCEECGKSFNRSTTLTTHKRIHTGEKPY 335
Cdd:COG5048 368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
|
170
....*....|....*....
gi 584277082 336 TCEECGKAFNWSSTLNVHK 354
Cdd:COG5048 448 LCSILKSFRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
290-442 |
7.62e-07 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 51.24 E-value: 7.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 290 TSSDFAKHKRIHTgekPYKCEECGKSFNRSTTLTTHKR--IHTGE--KPYTCEE--CGKAFNWSSTLNVHKRIHSGKNPY 363
Cdd:COG5048 276 NESDSSSEKGFSL---PIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPA 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 364 KC--EDCGKAFKVFAN-----LHNHKKIHTGEKPYIC--KQCGKAFKQSSHLNKHKKIHTVDKPY--KCKECGKAFKQYS 432
Cdd:COG5048 353 KEklLNSSSKFSPLLNneppqSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSKSFNRHY 432
|
170
....*....|
gi 584277082 433 NLPQHKRTHT 442
Cdd:COG5048 433 NLIPHKKIHT 442
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
136-443 |
5.10e-06 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 48.54 E-value: 5.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 136 DKTFKCKECGKSFHVLSRLTQHKRIHTGENPYTCEECGKAFNWSSILTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKR 215
Cdd:COG5048 31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 216 IHTGEKPYICEKC-GKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEEcgnvFTTSSDF 294
Cdd:COG5048 111 SSSSSNSNDNNLLsSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKD----PSSNLSL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 295 AKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKV 374
Cdd:COG5048 187 LISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLP 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 375 FANLHNHKKIHTGE-------KPYICKQCGKAFKQSSHLNKHK--KIHT--VDKPYKCKE--CGKAFKQYSNLPQHKRTH 441
Cdd:COG5048 267 TASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLrsVNHSgeSLKPFSCPYslCGKLFSRNDALKRHILLH 346
|
..
gi 584277082 442 TG 443
Cdd:COG5048 347 TS 348
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
405-430 |
2.35e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.12 E-value: 2.35e-04
10 20
....*....|....*....|....*.
gi 584277082 405 HLNKHKKIHTVDKPYKCKECGKAFKQ 430
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
293-318 |
5.05e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.35 E-value: 5.05e-04
10 20
....*....|....*....|....*.
gi 584277082 293 DFAKHKRIHTGEKPYKCEECGKSFNR 318
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
251-411 |
5.08e-04 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 42.38 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 251 YKCEECGKAFKWSSSLNEHKR--IHAGE--KPFSCEE--CGNVFTTSSDFAKHKRIHTGEKPYKCEEC-------GKSFN 317
Cdd:COG5048 290 IKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKLLnssskfsPLLNN 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 318 RSTTLTTHKRIHTGEKPYTCE--ECGKAFNWSSTLNVHKRIHSGKNPYKCED--CGKAFKVFANLHNHKKIHTgEKPYIC 393
Cdd:COG5048 370 EPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKNppCSKSFNRHYNLIPHKKIHT-NHAPLL 448
|
170
....*....|....*...
gi 584277082 394 KQCGKAFKQSSHLNKHKK 411
Cdd:COG5048 449 CSILKSFRRDLDLSNHGK 466
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
359-442 |
1.15e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 41.24 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 359 GKNPYKCE--DCGKAFKVFANLHNHKKiHtgekpyicKQCGKAFKQSSHLNKHKKIHTVDKPYKCKECGKAFKQYSNLPQ 436
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHML-H--------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
|
....*.
gi 584277082 437 HkRTHT 442
Cdd:COG5189 417 H-RKHS 421
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
322-345 |
1.83e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.81 E-value: 1.83e-03
|
| zf-C2H2 |
pfam00096 |
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
195-217 |
3.41e-03 |
|
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.
Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.97 E-value: 3.41e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
153-177 |
3.74e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 34.65 E-value: 3.74e-03
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
139-298 |
3.90e-03 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 39.29 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 139 FKCKECGKSFHVLSRLTQHKR--IHTGENPYTCEE----CGKAFNWSSILTKHKRIHAREKFYKC--EECGKGFTRSSH- 209
Cdd:COG5048 290 IKSKQCNISFSRSSPLTRHLRsvNHSGESLKPFSCpyslCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNn 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 210 ----LTKHKRIHTGEKPYICE--KCGKAFNQSSTLNLHKRIHSAQKY--YKCEECGKAFKWSSSLNEHKRIHAGEKPFSC 281
Cdd:COG5048 370 eppqSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC 449
|
170
....*....|....*..
gi 584277082 282 EECGNVFTTSSDFAKHK 298
Cdd:COG5048 450 SILKSFRRDLDLSNHGK 466
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
209-234 |
5.49e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 34.27 E-value: 5.49e-03
10 20
....*....|....*....|....*.
gi 584277082 209 HLTKHKRIHTGEKPYICEKCGKAFNQ 234
Cdd:pfam13465 1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
248-326 |
6.37e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 38.93 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 584277082 248 QKYYKCE--ECGKAFKWSSSLNEHkRIHAgekpfsceECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTH 325
Cdd:COG5189 347 GKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
|
.
gi 584277082 326 K 326
Cdd:COG5189 418 R 418
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
350-373 |
9.06e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 33.50 E-value: 9.06e-03
|
|