|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-1216 |
7.95e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 7.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 483 EQAA--TQLKVQLQEAERRWEEVQSYI---------RKRTAEHEAAQQDLQSKFVAKENEVQSLHskLTDTLVSKQQLEQ 551
Cdd:TIGR02168 162 EEAAgiSKYKERRKETERKLERTRENLdrledilneLERQLKSLERQAEKAERYKELKAELRELE--LALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 552 RLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQD 631
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 632 HLASKEEELKDVQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVA 697
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 698 SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEEL---LETGLIQVATREEELSAIRTE 774
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeLERLEEALEELREELEEAEQA 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 775 NSTLTREVQELKAK----QSDQVSFVSLIEDLKRVIHEKDGqiKSVEELLEVELLKVANK-----------------EKT 833
Cdd:TIGR02168 477 LDAAERELAQLQARldslERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGyeaaieaalggrlqavvVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 834 VQALKQEIEVLKEE------------IGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ----------------VNSMKAA 885
Cdd:TIGR02168 555 LNAAKKAIAFLKQNelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 886 LEDRdRDLRGRGTC---------AQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQ 956
Cdd:TIGR02168 635 LELA-KKLRPGYRIvtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 957 LSH-QKHQQASFPSQEELQTVISEKEKEI---TDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSV 1032
Cdd:TIGR02168 714 LEQlRKELEELSRQISALRKDLARLEAEVeqlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1033 PSNLNYS--EWLRGFEKKAKAC-VAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEES 1109
Cdd:TIGR02168 794 LKEELKAlrEALDELRAELTLLnEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1110 KWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKTQLNETHS-KL 1188
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTL 953
|
810 820
....*....|....*....|....*...
gi 651161708 1189 QNEQTERKKVADDLHKAQQSLNSIHSKI 1216
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
449-994 |
1.46e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 449 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 608
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 609 HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLL 688
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 689 EEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEkLRTVEELLETgLIQVATREEEL 768
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 769 SAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEVLK 845
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAlarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 846 EEIGNAQ-LEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKR 924
Cdd:COG1196 630 ARLEAALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 925 IEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESL 994
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
410-957 |
2.05e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 2.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 410 KFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSA--ELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT 487
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKE 567
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 568 ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNmn 647
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA-- 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 648 fLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:COG1196 474 -LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 728 PNKDVVEQMEKCIQ---------------EKDEKLRTVEELLETGLIQVAT------REEELSAIRTENSTLTREVQELK 786
Cdd:COG1196 551 IVVEDDEVAAAAIEylkaakagratflplDKIRARAALAAALARGAIGAAVdlvasdLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 787 AKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQ 866
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 867 ELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMS------ 940
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEE----LLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGpvnlla 786
|
570
....*....|....*...
gi 651161708 941 -ELLKEVQEENKFLKCQL 957
Cdd:COG1196 787 iEEYEELEERYDFLSEQR 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-1026 |
5.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 5.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSvviarmKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 415
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 416 eqmeAEIAHLKQENGILRDAVSNTTNQLESKqSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 495
Cdd:TIGR02168 295 ----NEISRLEQQKQILRERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 496 AERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEesLQIQVQ 575
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 576 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQ 655
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 656 KLQALAN-----EQAATAHEVEKMQKSIHVKEDKIRLLEEQL------------------QHEVASKMEEL--------- 703
Cdd:TIGR02168 524 VLSELISvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLkqnelgrvtflpldsikgTEIQGNDREILkniegflgv 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 704 -----KILSEQNKALQSE------VQKLQTAVSQQPNKDV---------------------VEQMEKCIQEKDEKLRTVE 751
Cdd:TIGR02168 604 akdlvKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 752 ELLETGLIQVATREEELSAIRTENSTLTREVQELKAkqsdqvsfvsLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKE 831
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRK----------ELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 832 KTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEEL 911
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE----RLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 912 ESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQL-SHQKHQQASFPSQEELQTVISEKEKEITDLCNE 990
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeALLNERASLEEALALLRSELEELSEELRELESK 909
|
730 740 750
....*....|....*....|....*....|....*.
gi 651161708 991 LESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRL 1026
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
461-792 |
1.14e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 461 LVSELNEKTGKLQQEgvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLT 540
Cdd:COG1196 194 ILGELERQLEPLERQ------AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELE----ELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 541 DTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLK 620
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---LAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 621 QTEDSLANEQDHLASKEEELKDVQNmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 701 EELKILSEQNKALQSEVQKLQTAVSQQpnkdvveqmekciQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR 780
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEAL-------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330
....*....|..
gi 651161708 781 EVQELKAKQSDQ 792
Cdd:COG1196 485 ELAEAAARLLLL 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
611-1216 |
1.97e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 611 VIAEKDKQLKQTEDSLANEQDHLA-SKEEELKDVQnmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLE 689
Cdd:COG1196 194 ILGELERQLEPLERQAEKAERYRElKEELKELEAE----LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 690 EQLQHEVASKMEELKILSEQNKALQSEVQKLQtavsqqpnKDVVEQMEKCIQEKDEKLRTVEELLETgLIQVATREEELS 769
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLE--------QDIARLEERRRELEERLEELEEELAEL-EEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 770 AIRTENSTLTREVQELKAKQSDQvsfVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIG 849
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 850 NAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEELESVLKEKDNEIKRIEVKL 929
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE----EAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 930 KDTESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNER 1008
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1009 -------RQHVEAIELESKDLLKRLFPTVSVPSNLnysEWLRGFEKKAKACVAGTSDAEAvkVLEHRLKEASEMHTLLQL 1081
Cdd:COG1196 574 atflpldKIRARAALAAALARGAIGAAVDLVASDL---READARYYVLGDTLLGRTLVAA--RLEAALRRAVTLAGRLRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1082 ECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELE 1161
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 651161708 1162 KAEMERstyvmevRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKI 1216
Cdd:COG1196 729 QLEAER-------EELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-151 |
1.97e-10 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 60.14 E-value: 1.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 29 MKETLYDEVLAKQKREQKLISTKTDKKKAEKKKNKKK------EIQNGTLRESD----SEHVPRDFKLSDASPAEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 651161708 99 PAPLNVAETSSSVRERKKKEKKQKPSLEEQVIKESDASKIPGKKVEPVLVTKQ 151
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKP 131
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1195 |
3.40e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 3.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 606 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVqnmnfllKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKI 685
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 686 RLLEEQLQhEVASKMEELKilseqnkalqsevqklqtavsqqpnkDVVEQMEKcIQEKDEKLRTVEELLETGLIQVATRE 765
Cdd:PRK03918 262 RELEERIE-ELKKEIEELE--------------------------EKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 766 EELSAIRTENSTLTREVQELKAKQSDqvsfVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALK-QEIEVL 844
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 845 KEEIGNAQLEKahqLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRdlrGRGTCAqVCSTPQFEELESVLKEK-DNEIK 923
Cdd:PRK03918 390 EKELEELEKAK---EEIEEEISKITARIGELKKEIKELKKAIEELKK---AKGKCP-VCGRELTEEHRKELLEEyTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 924 RIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRK 1003
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1004 KNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGF------EKKAKACVAGTSDAEAVKVLEHRLKEASEMHT 1077
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFesveelEERLKELEPFYNEYLELKDAEKELEREEKELK 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1078 LLQLECEKYKSVLAETEGILQKLQRSVEQEESKWkikadeSQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLE 1157
Cdd:PRK03918 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 651161708 1158 MELEKAEMERSTYVMEVRELK------TQLNETHSKLQNEQTER 1195
Cdd:PRK03918 697 EKLKEELEEREKAKKELEKLEkalervEELREKVKKYKALLKER 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
311-967 |
5.56e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 5.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 311 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKER---SSVVIARMKDRIGTLE 387
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 388 KEHNIFQNKMHASYQETQQMQMKfqqvQEQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 467
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskq 547
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL---- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 548 qleQRLMQLMESEQK-RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:TIGR02168 523 ---GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 626 LANEQDHLASKEEELKDVqnMNFLLK--AEVQKLQALANEQAATAH---------EVEKMQKSIHVKEDKIRLLEEQLQH 694
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKA--LSYLLGgvLVVDDLDNALELAKKLRPgyrivtldgDLVRPGGVITGGSAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 695 EVASKMEELKILSEQNKALQSEVQKLQTAVSQQpnKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 774
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 775 NSTLTREVQELKAKqsdqvsfvslIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE 854
Cdd:TIGR02168 756 LTELEAEIEELEER----------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 855 KAHQL----SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLK 930
Cdd:TIGR02168 826 LESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELI---------------EELESELEALLNERASLEEALA 890
|
650 660 670
....*....|....*....|....*....|....*..
gi 651161708 931 DTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASF 967
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-873 |
1.24e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 329 ELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKDRIGTLEKEHnifqnkmhasyQETQQMQ 408
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 409 MKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAATQ 488
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 489 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEE 568
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 569 SLQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE-LKDVQN 645
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAaLQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 646 MNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmeELKILSEQNKALQSEVqkLQTAVS 725
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS---DLREADARYYVLGDTL--LGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 726 QQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRV 805
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 651161708 806 IHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqLSVTSQVQELQNLLR 873
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP--PDLEELERELERLER 774
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
419-1024 |
1.58e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 419 EAEIAHLKQENGILRDAVSNTTNQLeSKQSAELNKLRQDCGRLVSELNEKTGklqqegvQKKNAEQAATQLKVQLQEAER 498
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKL-KKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEKQKKENKK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 499 RWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ----------RLMQLMESEQKRASKEE 568
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELE----KLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidkiknkllKLELLLSNLKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 569 SLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNF 648
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEI----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 649 LLKAEVQKLQA----LANEQAATAHEVEKMQksIHVKEDKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQ 721
Cdd:TIGR04523 285 ELEKQLNQLKSeisdLNNQKEQDWNKELKSE--LKNQEKKLEEIQNQIsqnNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 722 TAVSQQPNkdvveQMEKCIQEKDEKLRTVEELLetglIQVATREEELSAIRTENSTLTrevQELKAKQSDQVSFVSLIED 801
Cdd:TIGR04523 363 RELEEKQN-----EIEKLKKENQSYKQEIKNLE----SQINDLESKIQNQEKLNQQKD---EQIKKLQQEKELLEKEIER 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 802 LKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-KAHQLSVTSQVQELQNLlrgkeeqvN 880
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNlEQKQKELKSKEKELKKL--------N 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 881 SMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKmSELLKEVQEENKflkcQLSHQ 960
Cdd:TIGR04523 503 EEKKELEEKVKDLTKK----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-ENLEKEIDEKNK----EIEEL 573
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 651161708 961 KHQQASF-PSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLK 1024
Cdd:TIGR04523 574 KQTQKSLkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
479-1021 |
1.79e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 479 KKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 558
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 559 SEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEE 638
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 639 ELKDVQNmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ 718
Cdd:PTZ00121 1389 EKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 719 KLQTAVSQQPNKDVVEQMEKCiqekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQEL-KAKQSDQVSFVS 797
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkKAEEAKKADEAK 1540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 798 LIEDLKRVIH-EKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELqnllrgKE 876
Cdd:PTZ00121 1541 KAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA------KK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 877 EQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQ 956
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK--AAE 1692
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 651161708 957 LSHQKHQQASfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKD 1021
Cdd:PTZ00121 1693 ALKKEAEEAK--KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-1194 |
1.06e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 461 LVSELNEKTGKLQQEgvqkKNAEQAATQLKVQLQEAErrweevQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLT 540
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 541 DTLVSKQQLEQRLMQLmESEQKRASKEESLQIQvqdilEQNEALKAQIQQFHSQIAA-QTSASVLAEELHKVIAEKDKQL 619
Cdd:TIGR02169 262 ELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEkERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 620 KQTEDSlaneqdhlaskEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASK 699
Cdd:TIGR02169 336 AEIEEL-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 700 MEELKILSEQNKALQSEV----QKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 774
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 775 NSTLTREVQELKAKQS-------DQVSFVSLIEDLKRVIHEKDGQ-IKSVEELLEVELLKVANKEKTV-----QALKQEI 841
Cdd:TIGR02169 485 LSKLQRELAEAEAQARaseervrGGRAVEEVLKASIQGVHGTVAQlGSVGERYATAIEVAAGNRLNNVvveddAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 842 EVLKEEignaQLEKAHQLSVTSQVQELQNLLRGKEEQVnsMKAALEDRDRDLRGRGTCAQVC-STPQFEELESV------ 914
Cdd:TIGR02169 565 ELLKRR----KAGRATFLPLNKMRDERRDLSILSEDGV--IGFAVDLVEFDPKYEPAFKYVFgDTLVVEDIEAArrlmgk 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 915 ---------LKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSH--------QKHQQASFPSQEELQTVI 977
Cdd:TIGR02169 639 yrmvtlegeLFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlqselrriENRLDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 978 SEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPtvsvpsnlnysewlrgFEKKAKACVAGTS 1057
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE----------------LEEDLHKLEEALN 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1058 DAEAvKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESK----------WKIKADESQRMIKQMQS 1127
Cdd:TIGR02169 783 DLEA-RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiqelqeqridLKEQIKSIEKEIENLNG 861
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 651161708 1128 SFTASERELERLRQENKDME----NLRREREHLEMELEKAEMERSTYVMEVRELKTQLNETHSKLQNEQTE 1194
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLEsrlgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
460-983 |
2.80e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 460 RLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAeRRWEEVQSYIRKRTAEHEAAQQDLQSKfvAKENEVQSLHSKL 539
Cdd:PTZ00121 1278 RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKAEEA--KKAAEAAKAEAEA 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 540 TDTLVSKQQLEQRLMQLMESEQKRasKEESLQIQVQDILEQNEALKA--QIQQFHSQIAAQTSASVLAEELHKVIAEKDK 617
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKK--KADAAKKKAEEKKKADEAKKKaeEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 618 --QLKQTEDSlANEQDHLASKEEELKDVQNMNflLKAEVQKLQALANEQAATAHEVEKMQKSihVKEDKIRLLEEQLQHE 695
Cdd:PTZ00121 1433 adEAKKKAEE-AKKADEAKKKAEEAKKAEEAK--KKAEEAKKADEAKKKAEEAKKADEAKKK--AEEAKKKADEAKKAAE 1507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 696 VASKMEELKILSEQNKAlqSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLEtglIQVATREEELSAIRTEN 775
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKA--DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK---AEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 776 STLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVAN--KEKTVQALKQEIEVLKEEIGNAQl 853
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEqlKKKEAEEKKKAEELKKAEEENKI- 1661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 854 eKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTE 933
Cdd:PTZ00121 1662 -KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 651161708 934 SDVSKMSELLKEVQEENKFLKCQLSHQKHQQasfPSQEELQTVISEKEKE 983
Cdd:PTZ00121 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE---EIRKEKEAVIEEELDE 1787
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1252 |
4.64e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 4.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 478 QKKNAEQAATQLKVQLQEAERRWEEvqsyiRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 557
Cdd:PTZ00121 1096 AFGKAEEAKKTETGKAEEARKAEEA-----KKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 558 ESEQKRASKEESLQIQVQDILEQNEALKAQiqqfHSQIAAQTSASVLAEELHKVIAEKD-KQLKQTEDSLANEQDhlASK 636
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDAR----KAEAARKAEEERKAEEARKAEDAKKaEAVKKAEEAKKDAEE--AKK 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 637 EEElkdVQNMNFLLKAEVQKLQALANEQAATAHEVEKmqksihvKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSE 716
Cdd:PTZ00121 1245 AEE---ERNNEEIRKFEEARMAHFARRQAAIKAEEAR-------KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 717 VQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDqvsfv 796
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE----- 1389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 797 sliedlKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQlsvtsqVQELQNLLRGKE 876
Cdd:PTZ00121 1390 ------KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK------ADEAKKKAEEAK 1457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 877 EQVNSMKAALEDRDRDlrgrgtcaqvcstpqfeelesVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQ 956
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKAD---------------------EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 957 LSHQKHQQASFPSQEELQTVISEKEKEITDLCNEL---ESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVP 1033
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELkkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1034 SNLNYSEwlrgfEKKAKACVAGTSDAEAVKVLEHRLKEasemhtllqlECEKYKSVLAETEGILQKLQRSVEQEESKWKI 1113
Cdd:PTZ00121 1597 VMKLYEE-----EKKMKAEEAKKAEEAKIKAEELKKAE----------EEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1114 KADESQRMIKQmqssftaSERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVR---ELKTQLNETHSK--- 1187
Cdd:PTZ00121 1662 KAAEEAKKAEE-------DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeELKKAEEENKIKaee 1734
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 651161708 1188 LQNEQTERKKVADDLHKAQQSLNSI-HSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTV 1252
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKKDEEEKKKIaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
576-1207 |
6.61e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 6.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 576 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK--QLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAE 653
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 654 VQKlQALANEQAATAHEVEKMQKSIHV-KEDKIRLLEEQLQHEVASKMEELKILSEQNKAlqsEVQKLQTAVSQqpnkdv 732
Cdd:PTZ00121 1162 DAR-KAEEARKAEDAKKAEAARKAEEVrKAEELRKAEDARKAEAARKAEEERKAEEARKA---EDAKKAEAVKK------ 1231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 733 VEQMEKCIQE--KDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQEL----KAKQSDQVSFVSLIEDLKRVI 806
Cdd:PTZ00121 1232 AEEAKKDAEEakKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAeekkKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 807 HEK------DGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVn 880
Cdd:PTZ00121 1312 EEAkkadeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK- 1390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 881 smKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEvKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQ 960
Cdd:PTZ00121 1391 --KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 961 KHQQASFPSQ--------EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSV 1032
Cdd:PTZ00121 1468 EAKKADEAKKkaeeakkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1033 PSNLNYSEWLRGFEKKAKAcvagtsdAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQ-KLQRSVEQEESKW 1111
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKA-------EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1112 KI----KADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKTQLNETHSK 1187
Cdd:PTZ00121 1621 KAeelkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
650 660
....*....|....*....|
gi 651161708 1188 LQNEQTERKKVADDLHKAQQ 1207
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAEE 1720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
312-1026 |
7.78e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 7.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 312 KEKSGVIKEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLT---QEMMTEKERSSVVIARMKDRIGTL-E 387
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLgE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 388 KEHNIFQNKM---HASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGRLVSE 464
Cdd:TIGR02169 287 EEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 465 LNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKrtaeheaaqqdLQSKFVAKENEVQSLHSKLTDTLV 544
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-----------LQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 545 SKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTED 624
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL----------SKLQRELAEAEAQARASEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 625 slanEQDHLASKEEELKDVQNMNFLLKAE---VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ-------- 693
Cdd:TIGR02169 505 ----RVRGGRAVEEVLKASIQGVHGTVAQlgsVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflpl 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 694 HEVASKMEELKILSEqNKALQSEV------QKLQTAVSQQ-PNKDVVEQMEKCIQEKDE-KLRTVE-ELLE--------- 755
Cdd:TIGR02169 581 NKMRDERRDLSILSE-DGVIGFAVdlvefdPKYEPAFKYVfGDTLVVEDIEAARRLMGKyRMVTLEgELFEksgamtggs 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 756 ---TGLIQVATRE-EELSAIRTENSTLTREVQELKAKQSDQVSFV----SLIEDLKRVIHEKDGQIKSVEELLEVELLKV 827
Cdd:TIGR02169 660 rapRGGILFSRSEpAELQRLRERLEGLKRELSSLQSELRRIENRLdelsQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 828 ANKEKTVQALKQEIEVLKEEIgnaqlekahqlsvtsqvQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpQ 907
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSEL-----------------KELEARIEELEEDLHKLEEALNDLEARLSHS----------R 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 908 FEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ--------EELQTVISE 979
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienlngkkEELEEELEE 872
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 651161708 980 KEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRL 1026
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
507-785 |
7.87e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 7.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 507 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 587 QIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-----------VQNMNFLLKAEVQ 655
Cdd:TIGR02168 762 EIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanlrerLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 656 KLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQH-----------------EVASKMEELKILSEQNKALQSEVQ 718
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleealallrsELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 651161708 719 KLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEEL-LETGLIQVATREEELSAIRTENSTLTREVQEL 785
Cdd:TIGR02168 919 ELREKLAQLELR--LEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
378-995 |
1.71e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 378 RMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------- 447
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELEAAKclkedml 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 448 ---SAELNKLR----------QDCGRLVSELNEKTGKLQQEgvQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH 514
Cdd:pfam15921 166 edsNTQIEQLRkmmlshegvlQEIRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 515 EAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEqrLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQ 594
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE--ITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 595 IaaQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKM 674
Cdd:pfam15921 322 L--ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 675 QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ---KLQTAVSQQPNKDV-------------VEQMEK 738
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgqmERQMAAIQGKNESLekvssltaqlestKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 739 CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR----------EVQELKAKQSDQVSFVSLIEDLKRVIHE 808
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrvdlklqELQHLKNEGDHLRNVQTECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 809 KDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE----KAHQLSVTSQVQELQ-----------NLLR 873
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLElqefKILKDKKDAKIRELEarvsdlelekvKLVN 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 874 GKEEQVNSMKAALEDRDRDLRGRGTCAQVCS--TPQFEELESVLKEKDNEIK----RIEVKLKDTESDVSKMSELLKEVQ 947
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNslSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSME 719
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 651161708 948 -EENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLK 995
Cdd:pfam15921 720 gSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
387-1266 |
1.79e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.82 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 387 EKEHNIFQNKMHASYQET-QQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 456
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 457 DCGRlVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 602
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 603 VLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHvKE 682
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 683 DKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKlqtavsqQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVA 762
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL-------NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 763 TREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTvQALKQEIE 842
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 843 VLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKE-------EQVNSMKAALEDRDRDLRGRGTCAqvcsTPQFEELESVL 915
Cdd:TIGR00606 643 RLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvcQRVFQTEAELQEFISDLQSKLRLA----PDKLKSTESEL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 916 KEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHqqaSFPSQEELQTVISEKEKEITDLCNELESLK 995
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN---DIEEQETLLGTIMPEEESAKVCLTDVTIME 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 996 NAVEhqRKKNNERRQHVEAIELESKDLlkrlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLehrLKEASEM 1075
Cdd:TIGR00606 796 RFQM--ELKDVERKIAQQAAKLQGSDL------------DRTVQQVNQEKQEKQHELDTVVSKIELNRKL---IQDQQEQ 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1076 HTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKiKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRERE- 1154
Cdd:TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNk 937
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1155 --HLEMELEKAEMERSTYVME-------------VRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLK 1219
Cdd:TIGR00606 938 kaQDKVNDIKEKVKNIHGYMKdienkiqdgkddyLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWL 1017
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 651161708 1220 AAGDTVVIENSDISPEMESPEKETMSVSLNQtVTQLQQLLQEVNQQL 1266
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEMGQMQ-VLQMKQEHQKLEENI 1063
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-1174 |
2.30e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 370 ERSSVVIARMKDRIGTLEKEHNifqnkmHA-SYQETQQmqmkfqqvqEQMEAEIAHLKQENGILRDAVSNTTNQLESKQ- 447
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRRERE------KAeRYQALLK---------EKREYEGYELLKEKEALERQKEAIERQLASLEe 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 448 -----SAELNKLRQDCGRLVSELNEKTGKLQQEG------VQKK---------NAEQAATQLKVQLQEAERRWEEVQSYI 507
Cdd:TIGR02169 252 eleklTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrVKEKigeleaeiaSLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 508 RKRTAEHEAAQQDLQSKFVAKE---NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL 584
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 585 KAQIQQFHSQIAaqtsasvlaeELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQ 664
Cdd:TIGR02169 412 QEELQRLSEELA----------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD---LSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 665 AATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMeelkILSEQNKALQSEVQKL-----------QTAVSQQPNKDVV 733
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE----VLKASIQGVHGTVAQLgsvgeryataiEVAAGNRLNNVVV 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 734 EQ---MEKCIQ-EKDEKL---------------RTVEELLETGLIQVAT------REEELSAIRTENSTLTREVQELKAK 788
Cdd:TIGR02169 555 EDdavAKEAIElLKRRKAgratflplnkmrderRDLSILSEDGVIGFAVdlvefdPKYEPAFKYVFGDTLVVEDIEAARR 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 789 QSDQVSFVSLIEDLkrviHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQEL 868
Cdd:TIGR02169 635 LMGKYRMVTLEGEL----FEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 869 QNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQE 948
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKER-----------LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 949 ENKFLKCQLSHQKHQQASFPSQE------ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDL 1022
Cdd:TIGR02169 780 ALNDLEARLSHSRIPEIQAELSKleeevsRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1023 LKRLFPTVSVPSNLNYSewLRGFEKKAKACVAGTSDAEA-VKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQ 1101
Cdd:TIGR02169 860 NGKKEELEEELEELEAA--LRDLESRLGDLKKERDELEAqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1102 RSV--EQEESKWKIKADESQRMIKQMQSSFTA-----------SERELERLRQENKDMENLRREREHLEMELEKAEMERS 1168
Cdd:TIGR02169 938 DPKgeDEEIPEEELSLEDVQAELQRVEEEIRAlepvnmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
....*.
gi 651161708 1169 TYVMEV 1174
Cdd:TIGR02169 1018 EVFMEA 1023
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
338-953 |
3.12e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 338 QEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQ 417
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 418 MEA------EIAHLKQENGILRDA-----VSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 486
Cdd:TIGR00606 363 IRArdsliqSLATRLELDGFERGPfserqIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 487 TQLKVQLQEAERRWEEVQSYIRK---------------RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ 551
Cdd:TIGR00606 443 ELKKEILEKKQEELKFVIKELQQlegssdrileldqelRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 552 RLMQLMESEQKRASKEeslqIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQD 631
Cdd:TIGR00606 523 EMEQLNHHTTTRTQME----MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNK 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 632 HLASKEEELKDVQNMNFLLKAEVQKL----------QALANEQAATAHEVEKMQKSIHVKEDKIRLLE---EQLQHEVAS 698
Cdd:TIGR00606 599 ELASLEQNKNHINNELESKEEQLSSYedklfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSqfiTQLTDENQS 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 699 KMEELKILSEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTL 778
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 779 TREVQELK---AKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVlkEEIGNAQLEK 855
Cdd:TIGR00606 757 NRDIQRLKndiEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQEKQEK 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 856 AHQL-SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQvcstpQFEELESVLKEKDNEIKRIEVKLKDTES 934
Cdd:TIGR00606 835 QHELdTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-----RRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
650
....*....|....*....
gi 651161708 935 DVSKMSELLKEVQEENKFL 953
Cdd:TIGR00606 910 QDSPLETFLEKDQQEKEEL 928
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
309-801 |
4.82e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 309 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLSAMKedaaASKERCKQLTQEMMTEKERSSVviarMKDRIGTLEK 388
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 389 EHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 467
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 547
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 548 QLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 623
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 624 DSLANEQDHLASKEEELKDVQNMNFLLKAEV----QKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEqlqhEVASK 699
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----ELNKD 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 700 MEELK--ILSEQNKALQSEVQKLQTAVSQQPNKDvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:TIGR04523 551 DFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQ--EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
490 500
....*....|....*....|....
gi 651161708 778 LTREVQELKAKQSDQVSFVSLIED 801
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
256-752 |
7.88e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 7.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 256 DMIKPDHVEGIQKSGTKKLKIETDKENAEVKFKDFLLSLKTMMFSEDealcvvdllKEKSGVIKEALKKSNKGELSGLLH 335
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE---------KAEAAEKKKEEAKKKADAAKKKAE 1388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIfQNKMHASYQETQQMQMKFQQVQ 415
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK-ADEAKKKAEEAKKAEEAKKKAE 1467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 416 EQMEAEIAHLKQENGilRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQK----KNAEQAATQLKV 491
Cdd:PTZ00121 1468 EAKKADEAKKKAEEA--KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeeaKKADEAKKAEEK 1545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 492 QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRlmqlMESEQKRasKEESLQ 571
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK----MKAEEAK--KAEEAK 1619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 572 IQVQDILEQNEALKAQIQQFHSQIAAQTSASVL--AEELHKVIAEKDKQLKQTEDSLANEqdhLASKEEELKDVQNMNFL 649
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELkkAEEENKIKAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 650 LKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEvASKMEELKILSEQNKALQsEVQKLQTAVSQQPN 729
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKKKIA-HLKKEEEKKAEEIR 1774
|
490 500
....*....|....*....|...
gi 651161708 730 KDVVEQMEKCIQEKDEKLRTVEE 752
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-726 |
1.20e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 370 ERSSVVIARmKDRIGTLEKEhnifQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLEsKQSA 449
Cdd:TIGR02168 667 KTNSSILER-RREIEELEEK----IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA-RLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 450 ELNKLRQDCGRLVSELNEKTG-------KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQ 522
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAeieeleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 523 SKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAs 602
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE- 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 603 vlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnfllkaEVQKLQALANEQAATAHEVEKMQ----KSI 678
Cdd:TIGR02168 896 --LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR------IDNLQERLSEEYSLTLEEAEALEnkieDDE 967
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 651161708 679 HVKEDKIRLLEEQLQH----------EVASKMEELKILSEQNKALQSEVQKLQTAVSQ 726
Cdd:TIGR02168 968 EEARRRLKRLENKIKElgpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
347-1008 |
2.56e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 347 MKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQnkmhasyQETQQMQMKFQQVQeQMEAEIAHLK 426
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE-------KKQEELKFVIKELQ-QLEGSSDRIL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 427 QENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsy 506
Cdd:TIGR00606 475 ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ---- 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 507 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDtlvsKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:TIGR00606 551 IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE----INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 587 QIQQFHSQIAAQTSASVLAEELHKviAEKDKQLKQTEDSLANEQ-DHLASKEEELKDVQNMNFLLKAEVQ----KLQALA 661
Cdd:TIGR00606 627 KLFDVCGSQDEESDLERLKEEIEK--SSKQRAMLAGATAVYSQFiTQLTDENQSCCPVCQRVFQTEAELQefisDLQSKL 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 662 NEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQ 741
Cdd:TIGR00606 705 RLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 742 EKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTREVQELKAKQSDQV----SFVSLIEDLKRVIHEKDGQI---K 814
Cdd:TIGR00606 785 KVCLTDVTIMERFQMELKDVERKIAQQAA-KLQGSDLDRTVQQVNQEKQEKQheldTVVSKIELNRKLIQDQQEQIqhlK 863
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 815 SVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-KAHQLSVTSQVQELQNLLRGKEEQVNSMKAA-------L 886
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREiKDAKEQDSPLETFLEKDQQEKEELISSKETSnkkaqdkV 943
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 887 EDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAS 966
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 651161708 967 FPSQEELQTVISEKEKEITDLcNELESLKNAVEHQRKKNNER 1008
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHLKEM-GQMQVLQMKQEHQKLEENID 1064
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
510-856 |
3.27e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 50.84 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 510 RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQ 589
Cdd:pfam19220 49 RLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 590 QFHSQIAAqtsasvLAEELhkviAEKDKQLKQTEDSLAneqdhlaSKEEELKDVQNMNFLLKAEVQKLQALANEQAATAH 669
Cdd:pfam19220 129 AETEQNRA------LEEEN----KALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAAELA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 670 EVEK----MQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEV----QKLQTAVSQQPNKDVV-EQMEKCI 740
Cdd:pfam19220 192 ELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATEQLlAEARNQL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 741 QEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELkakQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELL 820
Cdd:pfam19220 272 RDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEM---QRARAELEERAEMLTKALAAKDAALERAEERI 348
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 651161708 821 EVELLKVANKEKTV----QALKQEIEVLKEEIGNAQLEKA 856
Cdd:pfam19220 349 ASLSDRIAELTKRFeverAALEQANRRLKEELQRERAERA 388
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
353-1152 |
6.26e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 6.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 353 ASKERCKQLTQEMmTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGIL 432
Cdd:TIGR00618 160 AKSKEKKELLMNL-FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 433 RDAVSNTTNQLESKQSAElnKLRQDCGRLVSELNEKTGKLqqegvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTA 512
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQL--KKQQLLKQLRARIEELRAQE---------AVLEETQERINRARKAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFH 592
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 593 SQIAAQTSAS-VLAEELHKVIAEKDKQLKQTEdSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLqalANEQAATAHEV 671
Cdd:TIGR00618 386 QQKTTLTQKLqSLCKELDILQREQATIDTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITCT---AQCEKLEKIHL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 672 EKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQN-------KALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKD 744
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 745 EKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLkrvihekdGQIKSVEELLEVEL 824
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDL--------TEKLSEAEDMLACE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 825 LKVANKEKTVQALKQEIEVLKEeignaQLEKAHQLSVTSQVQELQNLLRGKEEqvnsmkaaledrdrdlrgrgtcaqvcs 904
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQ-----QCSQELALKLTALHALQLTLTQERVR--------------------------- 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 905 tpqfEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLshqkhqqasfpsqeelqTVISEKEKEI 984
Cdd:TIGR00618 662 ----EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE-----------------THIEEYDREF 720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 985 TDLCNELESLKNAVEHQRKKNNERRQHveaieleskdlLKRLFPTVSVPSNLNYSewlRGFEKKAKACVAGTSDAEAVKV 1064
Cdd:TIGR00618 721 NEIENASSSLGSDLAAREDALNQSLKE-----------LMHQARTVLKARTEAHF---NNNEEVTAALQTGAELSHLAAE 786
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1065 LEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADE---SQRMIKQMQSSFTASERELERLRQ 1141
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEksaTLGEITHQLLKYEECSKQLAQLTQ 866
|
810
....*....|.
gi 651161708 1142 ENKDMENLRRE 1152
Cdd:TIGR00618 867 EQAKIIQLSDK 877
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
599-1154 |
7.04e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.67 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 599 TSASVLAEELHKVIAEKDKQLKQTEDSLAnEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSI 678
Cdd:PRK01156 131 NSIFVGQGEMDSLISGDPAQRKKILDEIL-EINSLERNYDKLKDVIDM---LRAEISNIDYLEEKLKSSNLELENIKKQI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 679 HVKEDKIRLLEEQLQHEVA-------------SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDV-----VEQMEKCI 740
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIeynnamddynnlkSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNyykelEERHMKII 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 741 QEKDEKLRTVEELLETGLIQVATREEELSAIRTENST---LTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDG---QIK 814
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKyhaIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGyemDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 815 SVEELLEVELLKVANKEKTVQALKQEI-EVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRD- 892
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFIsEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNm 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 893 --LRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLkcqlshqkhQQASFPSQ 970
Cdd:PRK01156 447 emLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL---------ESEEINKS 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 971 EELQTVISEKEKEITDLCNELESLKNA-VEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEW------LR 1043
Cdd:PRK01156 518 INEYNKIESARADLEDIKIKINELKDKhDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSneikkqLN 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1044 GFEKKAKACVAGTSDAEA------------VKVLEHRLKEASEMHTL---LQLECEKYKSVLAETEGIlQKLQRSVEQEE 1108
Cdd:PRK01156 598 DLESRLQEIEIGFPDDKSyidksireieneANNLNNKYNEIQENKILiekLRGKIDNYKKQIAEIDSI-IPDLKEITSRI 676
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 651161708 1109 SKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRERE 1154
Cdd:PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
734-1026 |
7.26e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 7.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 734 EQMEK--CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTEN-STLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD 810
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 811 GQ--IKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIgnAQLEKAHQLSVtsqvqELQNLLRGKeeqvnSMKAALED 888
Cdd:PRK05771 84 LEelIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--ERLEPWGNFDL-----DLSLLLGFK-----YVSVFVGT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 889 RDRDlrgrgtcaqvcstpQFEELESVlKEKDNEIKRIEVKLKDT------ESDVSKMSELLKEVQEENKflkcqlshqkh 962
Cdd:PRK05771 152 VPED--------------KLEELKLE-SDVENVEYISTDKGYVYvvvvvlKELSDEVEEELKKLGFERL----------- 205
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 651161708 963 qqaSFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEA---IELESKDLLKRL 1026
Cdd:PRK05771 206 ---ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyleIELERAEALSKF 269
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
473-712 |
1.16e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 473 QQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVakENEVQSLHSKLTDTLVSKQQLEQR 552
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 553 LMQLmesEQKRASKEESLQIQVQDILEQNeaLKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQLKQTEDSLANEQDH 632
Cdd:COG3206 242 LAAL---RAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAEL---SARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 633 LASKeeelkdvqnmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ------HEVASKMEELKIL 706
Cdd:COG3206 314 ILAS-------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLA 380
|
....*.
gi 651161708 707 SEQNKA 712
Cdd:COG3206 381 EALTVG 386
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
445-687 |
1.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 445 SKQSAELNKLRQdcgrlvsELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQsk 524
Cdd:COG4942 23 AEAEAELEQLQQ-------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 525 fvAKENEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESE--QKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 600
Cdd:COG4942 94 --ELRAELEAQKEELAELLRALYRLGRqpPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 601 AsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHV 680
Cdd:COG4942 172 E---RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*..
gi 651161708 681 KEDKIRL 687
Cdd:COG4942 249 AALKGKL 255
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
401-565 |
1.32e-05 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 49.28 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 401 YQETQQMQmKFQQVQEQMEAEI------AHLKQENGI--LRDAVSNTTNQLEsKQSAELNKLRQDCGRLV--SELNEKTG 470
Cdd:pfam15967 250 CQDVENFQ-KFVKEQKQVQEEIsrmsskAMLKVQDDIkaLKQLLSVAASGLQ-RNSLAIDKLKIETAQELknADIALRTQ 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 471 KlQQEGVQKKNAEQA------ATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-------SKFVAKENEVQSLHS 537
Cdd:pfam15967 328 K-TPPGLQHENTAPAdyfrslVEQFEVQLQQYRQQIEELENHLTTQSSSSHITPQDLSlamqklyQTFVALAAQLQSVHE 406
|
170 180 190
....*....|....*....|....*....|..
gi 651161708 538 KLtdTLVSKQQLEQRLMQLMES----EQKRAS 565
Cdd:pfam15967 407 NV--KILKEQYLGYRKAFLEDStdvfEAKRAE 436
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
546-1269 |
1.38e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 546 KQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEalKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 626 LANEQDH---LASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmQKSIHVKEDKIRLLEEQLQHEVASKMEE 702
Cdd:pfam02463 249 EQEEIESskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK-SELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 703 LKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGliqvatREEELSAIRTENSTLTREV 782
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE------SERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 783 QELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVT 862
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 863 SQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGtcaqvcstPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSEL 942
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALI--------KDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 943 LKEVQEENKFLKCQL----SHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELE 1018
Cdd:pfam02463 554 SATADEVEERQKLVRalteLPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1019 SKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEM-HTLLQLECEKYKSVLAETEGIL 1097
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1098 QKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREhLEMELEKAEMERSTYVMEVREL 1177
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS-LKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1178 KTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTVTQLQQ 1257
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
730
....*....|..
gi 651161708 1258 LLQEVNQQLTKE 1269
Cdd:pfam02463 873 LLKEEELEEQKL 884
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
495-1016 |
3.41e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 495 EAERRWEEVQSYIRK-----RTAEHEAAQQDLQSKFVAKENEVQSLHSKLT--DTLVSKQQLE--QRLMQLMESEQKRAS 565
Cdd:COG4913 222 DTFEAADALVEHFDDlerahEALEDAREQIELLEPIRELAERYAAARERLAelEYLRAALRLWfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 566 KE-ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQ 644
Cdd:COG4913 302 AElARLEAELERLEARLDALREELDELEAQIRGNGGDRL--EQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 645 nmnfllkAEVQKLQALANEQAATAHEvekMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAV 724
Cdd:COG4913 380 -------EEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 725 SQQPNKD------VVEQMEkcIQEKDEK--------------------------LRTVEELLETGLIQ---VATREEELS 769
Cdd:COG4913 450 AEALGLDeaelpfVGELIE--VRPEEERwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVyerVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 770 AIRTENSTLTRE-----------VQELKAKQSDQVSfVSLIEDLKRV---------------IHEKDGQ--IKSVEELLE 821
Cdd:COG4913 528 RPRLDPDSLAGKldfkphpfrawLEAELGRRFDYVC-VDSPEELRRHpraitragqvkgngtRHEKDDRrrIRSRYVLGF 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 822 VELLKVANKEKTVQALKQEIEVLKEEIgnAQLEKAHQlSVTSQVQELQNLLRGKEEQVNSMK-----AALEDRDRDLRGr 896
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERL--EALEAELD-ALQERREALQRLAEYSWDEIDVASaereiAELEAELERLDA- 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 897 gtcaqvcSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEEnkflkCQLSHQKHQQASFPSQEELQTV 976
Cdd:COG4913 683 -------SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----LDELQDRLEAAEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 651161708 977 ISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIE 1016
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
352-806 |
3.44e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.51 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 352 AASKERCKQLTQEMmteKERSSVVIARMKDRIGTLEKEHNiFQNKMHASYQETQQmqmkFQQVQEQMEAEIAHLKQENGI 431
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQ----YQQVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 432 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEgvQKKNAE---------QAATQLKVQLQEAERRwee 502
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQE--QDRAREisdslsqlpQQQTEARRQLNEIERR--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 503 VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhskltdtlvskqqleqrlmqlmESEQKRAS-KEESLQIQVQDILEQN 581
Cdd:PRK10929 160 LQTLGTPNTPLAQAQLTALQAESAALKALVDEL----------------------ELAQLSANnRQELARLRSELAKKRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 582 EALKAQIQQFHSQIAAQTSAsvlaeelhkviaEKDKQLKQTEdSLANEQDHL-ASKEEELKDVQNMNFLLKAEVQKLQAL 660
Cdd:PRK10929 218 QQLDAYLQALRNQLNSQRQR------------EAERALESTE-LLAEQSGDLpKSIVAQFKINRELSQALNQQAQRMDLI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 661 ANEQAATAHEVEKMQKSIhvkeDKIR----------LLEEQLQHEVA------------SKMEELKILSEQNKALQSEVQ 718
Cdd:PRK10929 285 ASQQRQAASQTLQVRQAL----NTLReqsqwlgvsnALGEALRAQVArlpempkpqqldTEMAQLRVQRLRYEDLLNKQP 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 719 KLQTAvsQQPNKDVVEQMEKCIQekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLT---REVQELKAK------Q 789
Cdd:PRK10929 361 QLRQI--RQADGQPLTAEQNRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRylfwvaD 436
|
490 500
....*....|....*....|
gi 651161708 790 SDQVSF---VSLIEDLKRVI 806
Cdd:PRK10929 437 VSPISLsypLEIAQDLRRLL 456
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
443-891 |
3.97e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 443 LESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYI-----RKRTAEHEAA 517
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeelreELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 518 QQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDI-LEQNEALKAQIQQFHSQIA 596
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 597 AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDhlaskEEELKDVQNMNFLLkAEVQKLQALANEQAATAHEVEKMQK 676
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAAL-----EERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 677 SIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTA--VSQQPNKDVVEQMEKCIQEKDEKLRTVEELL 754
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlgLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 755 ETglIQVATREEELSAIRTENSTLTREVQELKAKQSDQ-VSFVSLIEDLKRVIHEKDGQIKSVEELLEVEL--LKVANKE 831
Cdd:COG4717 361 EE--LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEyQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELE 438
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 832 KTVQALKQEIEVLKEEIGNAQlekaHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDR 891
Cdd:COG4717 439 EELEELEEELEELREELAELE----AELEQLEEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
471-756 |
4.46e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 471 KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 550
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 551 QRLMQLmesEQKRASKEEslqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 626
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 627 ANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLqheVASKMEELKIL 706
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 651161708 707 SEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEELLET 756
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEAS 339
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-712 |
7.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 482 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQ 561
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL---EK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 562 KRASKEESLQIQVQDILEQNEALKAQIQQ------FHSQIAAQTSASV-LAEELHKVIAEKDKQLKQTEDSLANEQDHLA 634
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 651161708 635 SKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKA 712
Cdd:COG4942 171 AERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-600 |
8.01e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 46.29 E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 399 ASYQETQQMQMKFQQVQEQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTG 470
Cdd:pfam09787 4 SAKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 471 KLQQEGVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD-- 541
Cdd:pfam09787 83 QQQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSks 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 542 -TLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 600
Cdd:pfam09787 160 qSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
433-792 |
1.40e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 433 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQsyirkrta 512
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL-------K 585
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 586 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqNMNFLLKAEVQK----- 656
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVDLgnaed 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 657 -LQALANEQAATAHEVEKMQKSIHVKEDKIR----LLEEQLQHEVASKMEELKILS------EQNKALQSEVQKLQTAVS 725
Cdd:PRK02224 413 fLEELREERDELREREAELEATLRTARERVEeaeaLLEAGKCPECGQPVEGSPHVEtieedrERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 651161708 726 QQPNK-----DVVEQmEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ 792
Cdd:PRK02224 493 EVEERleraeDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
415-656 |
1.46e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.37 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 486
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 487 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASK 566
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 567 EESLQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLANEQ----DHLASKEE 638
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 651161708 639 ELKDVQNMNFLLKAEVQK 656
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
419-954 |
1.81e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 419 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 495
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 496 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQ 573
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 574 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAE 653
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 654 VQKLQALANEQAATAHEVEKMQKSIHV------KEDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 728 PNKDVVEQMEKCIQEKDEKLRTVE-ELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVI 806
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 807 HEKDGQIKSV-------EELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLsvtSQVQELQNLLRGKEEQV 879
Cdd:PRK03918 573 AELLKELEELgfesveeLEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF---EELAETEKRLEELRKEL 649
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 651161708 880 NSMKAAL-EDRDRDLRGRgtcaqvcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLK 954
Cdd:PRK03918 650 EELEKKYsEEEYEELREE-----------YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
336-893 |
2.01e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 415
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 416 EQMEAEIahlkqengilrDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQ-----LK 490
Cdd:pfam12128 357 ENLEERL-----------KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQaleseLR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 491 VQLQEAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRA 564
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 565 SKEESLQIQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEkdKQLKQTEdsLANEQDhlaskEEE 639
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISP--ELLHRTD--LDPEVW-----DGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 640 LKDVQNMnFLLKAEVQKLQA---LANEQAATAhEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSE 716
Cdd:pfam12128 574 VGGELNL-YGVKLDLKRIDVpewAASEEELRE-RLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNA 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 717 VQKLQ--TAVSQQPNKDVVEQMEKCIQEKDEKLRTVE---ELLETGLIQ-VATREEELSAIRTENSTLTREVQELKAKQS 790
Cdd:pfam12128 652 RLDLRrlFDEKQSEKDKKNKALAERKDSANERLNSLEaqlKQLDKKHQAwLEEQKEQKREARTEKQAYWQVVEGALDAQL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 791 DQVSFVSLIEDLKRvihekDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQN 870
Cdd:pfam12128 732 ALLKAAIAARRSGA-----KAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL 806
|
570 580
....*....|....*....|....
gi 651161708 871 LLRGK-EEQVNSMKAALEDRDRDL 893
Cdd:pfam12128 807 QRRPRlATQLSNIERAISELQQQL 830
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
414-591 |
2.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 414 VQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAATQLKVQL 493
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 494 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 554
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 651161708 555 QLMESEQkraskeESLQIQVQDILEQNEALKAQIQQF 591
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
527-1166 |
4.40e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 527 AKENEVQSLHSKLTDTLVSKQQLEQRLMqlMESEQKRASKEESLQIQVQDILEQNEALKAQIQQ---------FHSQIAA 597
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFS--LKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQrvelaerqlQELKIDV 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 598 QTSASV--LAEELHKVIAEKDKQLKQTE--------DSLANEQDHLasKEEELKDVQNMNFLLKAEVQKLQALANEQAAT 667
Cdd:COG5022 892 KSISSLklVNLELESEIIELKKSLSSDLienlefktELIARLKKLL--NNIDLEEGPSIEYVKLPELNKLHEVESKLKET 969
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 668 AHEVEKM--QKSIHVKEDKIRLLE-EQLQHEVASKMEELKILSEQNKAL---QSEVQKLQTAVSQQPNKDVVEQMEKCIQ 741
Cdd:COG5022 970 SEEYEDLlkKSTILVREGNKANSElKNFKKELAELSKQYGALQESTKQLkelPVEVAELQSASKIISSESTELSILKPLQ 1049
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 742 EKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLtrEVQELKAKqsdqvSFVSLIEDLKRVIHEKDgqiKSVEELLE 821
Cdd:COG5022 1050 KLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQL--ESTENLLK-----TINVKDLEVTNRNLVKP---ANVLQFIV 1119
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 822 VELLKVANKEKTVQALKQEIEVLKEEIGNAQlEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQ 901
Cdd:COG5022 1120 AQMIKLNLLQEISKFLSQLVNTLEPVFQKLS-VLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSE 1198
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 902 VcsTPQFEELESVLKeKDNEIKRIEVKLKDTESDVSKMSELLKEVQEEN---KFLKCQLSHQKHQQASFPSQeeLQTVIS 978
Cdd:COG5022 1199 V--NDLKNELIALFS-KIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNnlnKKFDTPASMSNEKLLSLLNS--IDNLLS 1273
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 979 EKEKEitdlcnelESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLfptvsvpSNLNY-SEWLRGFEKKAKACVAGTS 1057
Cdd:COG5022 1274 SYKLE--------EEVLPATINSLLQYINVGLFNALRTKASSLRWKSA-------TEVNYnSEELDDWCREFEISDVDEE 1338
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1058 ---DAEAVKVLEHRLKEASEMHTLLQLeceKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASER 1134
Cdd:COG5022 1339 leeLIQAVKVLQLLKDDLNKLDELLDA---CYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEGKD 1415
|
650 660 670
....*....|....*....|....*....|....
gi 651161708 1135 ELERLRQENKDMEN--LRREREHLEMELEKAEME 1166
Cdd:COG5022 1416 ETEVHLSEIFSEEKslISLDRNSIYKEEVLSSLS 1449
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
772-1177 |
4.72e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 772 RTENstLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNA 851
Cdd:PRK03918 187 RTEN--IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 852 QlekahqlsvtSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQfeELESVLKEKDNEIKRIEVKLKD 931
Cdd:PRK03918 265 E----------ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR--EIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 932 TESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASfPSQEELQTVISE-KEKEITDLCNELESLKNAVEHQRKKNNERR 1009
Cdd:PRK03918 333 LEEKEERLEELKKKLKElEKRLEELEERHELYEEAK-AKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1010 QHVEAIELESKDLLKRLfptvsvpsnlnysEWLRGFEKKAKACVAGTSDAE----------AVKVLEHRLKEASEMHTLL 1079
Cdd:PRK03918 412 ARIGELKKEIKELKKAI-------------EELKKAKGKCPVCGRELTEEHrkelleeytaELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1080 QLECEKYKSVLAETEGILQKLQ-----RSVEQEESKWKI-KADESQRMIKQMQSSFTASERELERLRQENKDMENLRRER 1153
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
410 420
....*....|....*....|....
gi 651161708 1154 EHLEMELEKAEMERSTYVMEVREL 1177
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEEL 582
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-888 |
5.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAT 487
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKltDTLVSKQQLEQR--------------- 552
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--KSNIPARLLALRdalaealgldeaelp 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 553 ----LMQLMESEQK-RASKE-------------ESLQIQVQDILEQNeALKAQIQQFHsqiAAQTSASVLAEELHkviae 614
Cdd:COG4913 462 fvgeLIEVRPEEERwRGAIErvlggfaltllvpPEHYAAALRWVNRL-HLRGRLVYER---VRTGLPDPERPRLD----- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 615 kdkqlkqtEDSLANEqdhLASKEEELKDvqnmnfLLKAEVQKLQALAneQAATAHEVEKMQKSI------------HVKE 682
Cdd:COG4913 533 --------PDSLAGK---LDFKPHPFRA------WLEAELGRRFDYV--CVDSPEELRRHPRAItragqvkgngtrHEKD 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 683 DKIRLLEE-QLQHEVASKmeeLKILSEQNKALQSEVQKLQTAVSQqpnkdvVEQMEKCIQEKDEKLRTVEELLETGL--- 758
Cdd:COG4913 594 DRRRIRSRyVLGFDNRAK---LAALEAELAELEEELAEAEERLEA------LEAELDALQERREALQRLAEYSWDEIdva 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 759 ---IQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTV- 834
Cdd:COG4913 665 saeREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAr 744
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 651161708 835 QALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ-VNSMKAALED 888
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAMRAFNRE 799
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
526-1198 |
6.60e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 6.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 526 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKaqiqqfHSQIAAQTSASVLA 605
Cdd:pfam05483 95 VSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATR------HLCNLLKETCARSA 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 606 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQN----MNFLLKAEVQKLQalaneqaataHEVEKMQKSIHVK 681
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENarleMHFKLKEDHEKIQ----------HLEEEYKKEINDK 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 682 EDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKlQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGL--- 758
Cdd:pfam05483 239 EKQVSLLLIQIT-EKENKMKDLTFLLEESRDKANQLEE-KTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKale 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 759 --IQVATREeeLSAIRTENSTLTREVQELKAKQSDQVS----FVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEK 832
Cdd:pfam05483 317 edLQIATKT--ICQLTEEKEAQMEELNKAKAAHSFVVTefeaTTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 833 TVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELE 912
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVE 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 913 SVLKEKDNEikrievKLKDTE--SDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEE--LQTVISEKEKEiTDLC 988
Cdd:pfam05483 475 DLKTELEKE------KLKNIEltAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEErmLKQIENLEEKE-MNLR 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 989 NELESLKNAVEHQRK----KNNERRQHVEAIELESKDLLKRLFPTVSVPSNL-----NYSEWLRGFEKKAKAC-VAGTSD 1058
Cdd:pfam05483 548 DELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLkkqieNKNKNIEELHQENKALkKKGSAE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1059 AEAVKVLEHRLKEasemhtlLQLECEKYKSVLAETEGILQK-------LQRSVEQEESKWKIKADESQRMIKQMQSSFTA 1131
Cdd:pfam05483 628 NKQLNAYEIKVNK-------LELELASAKQKFEEIIDNYQKeiedkkiSEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 651161708 1132 SERELERLRQENKDMENLRREREHLEMELEKAEME-----RSTYVMEVRELKTQLNETHSKLQNEQTERKKV 1198
Cdd:pfam05483 701 KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQeqssaKAALEIELSNIKAELLSLKKQLEIEKEEKEKL 772
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-746 |
6.99e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 526 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAA-QTSASVL 604
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 605 AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDK 684
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 651161708 685 IRLLE-------EQLQHEVASKMEELKILSEQNKALQSEVQKLQTavSQQPNKDVVEQMEKCIQEKDEK 746
Cdd:COG4942 176 LEALLaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQ--EAEELEALIARLEAEAAAAAER 242
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
557-858 |
8.07e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.69 E-value: 8.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 557 MESEQKR-ASKEESLQIQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLAS 635
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 636 KEEELK---DVQNMNFLLKAEVQKLQALANEQAATA-------HEVEKMQ-----KSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRApnylslkYKLDMLNefsraKALSEKKSKAEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 701 EELKIlSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTR 780
Cdd:PLN03229 572 DRPEI-KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAE-QTPPPNLQE 649
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 651161708 781 EVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIksveeLLEVELLKVANKEKtVQALKQEI-EVLKEEIGNAQLEKAHQ 858
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIELLKLEV-----AKASKTPDVTEKEK-IEALEQQIkQKIAEALNSSELKEKFE 722
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
537-1025 |
1.17e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 537 SKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 616
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 617 KQLKQTEDSLANEQDHLASKEEELKDVQNmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQhEV 696
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKE----LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 697 ASKMEELKILSEQNKALQSEVQKLQTAVSQ-QPNKDVVEQMEKCiqEKDEKLRTVEElLETGLIQVATREEElsaIRTEN 775
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERL--KKRLTGLTPEK-LEKELEELEKAKEE---IEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 776 STLTREVQELKAKQSDQVSFVSLIEDLKRVI---------HEKDGQIKSveellevELLKVANKEKTVQALKQEIEVLKE 846
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelteEHRKELLEE-------YTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 847 EIGNAQLEKAHQLSVTSQvQELQNLLRGKEEQVNSMKaaLEDRDRDLRgrgtcaqvcstpQFEELESVLKEKDNEIKRIE 926
Cdd:PRK03918 481 ELRELEKVLKKESELIKL-KELAEQLKELEEKLKKYN--LEELEKKAE------------EYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 927 VKLKDTESDVSKMSELLKEVQEENKFLKCQlsHQKHQQASFPSQEELQTVISEKE-------------KEITDLCNELES 993
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAEL--LKELEELGFESVEELEERLKELEpfyneylelkdaeKELEREEKELKK 623
|
490 500 510
....*....|....*....|....*....|..
gi 651161708 994 LKNAVEHQRKKNNERRQHVEAIELESKDLLKR 1025
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
463-668 |
1.19e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 463 SELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 542
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 543 LVSKQQ---LEQRLMQLMESEQ-----KRASKEESLQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 606
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 651161708 607 ELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATA 668
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
682-1191 |
1.24e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 682 EDKIRLLEEQLQHEVASKME-ELKILSEQNKALqsEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETgliq 760
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLEsELAELDEEIERY--EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRET---- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 761 VATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSL----IEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQA 836
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 837 LKQEIEVLKEEIGNAQlEKAHQLSvtSQVQELQNLLRGKEEQVnsmkAALEDRDRDLRGRGTCAQVcstpQFEELESVLK 916
Cdd:PRK02224 347 LREDADDLEERAEELR-EEAAELE--SELEEAREAVEDRREEI----EELEEEIEELRERFGDAPV----DLGNAEDFLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 917 EKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSqeelqtVISEKEKEITDLCNELESLKN 996
Cdd:PRK02224 416 ELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVE------TIEEDRERVEELEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 997 AVEHQRKKNNERRQHVEAielesKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKAcvagTSDAEAVKVLEHRLKEASEMH 1076
Cdd:PRK02224 490 EVEEVEERLERAEDLVEA-----EDRIERLEERREDLEELIAERRETIEEKRERA----EELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1077 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESkwkikadesqrmIKQMQSSFTASERELERLRQENKD---MENLRRER 1153
Cdd:PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLER------------IRTLLAAIADAEDEIERLREKREAlaeLNDERRER 628
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 651161708 1154 -------------EHLEMELEKAEMERS---TYVMEVRELKTQLNETHSKLQNE 1191
Cdd:PRK02224 629 laekrerkreleaEFDEARIEEAREDKEraeEYLEQVEEKLDELREERDDLQAE 682
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-640 |
1.26e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 311 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKD 381
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 382 RIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 451
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 452 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAE 513
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 514 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEA------LKAQ 587
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 651161708 588 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEEL 640
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
416-600 |
1.32e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 416 EQMEAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT--QLK 490
Cdd:COG3206 192 EEAEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 491 VQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG3206 270 AQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 651161708 560 EQKRASKEESLQIQvQDILEQneaLKAQIQQFHSQIAAQTS 600
Cdd:COG3206 350 EAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
908-1206 |
1.33e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 908 FEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKcqlshqkhqqasfpSQEELQTVISEKEKEITDL 987
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN--------------EISSELPELREELEKLEKE 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 988 CNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVsvpsnlnysEWLRGFEKKAKACVAGTSDAEAVKVLEH 1067
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK---------KEIEELEEKVKELKELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1068 RLKEASEMHTLLQLECEKYKSVLAETEGILQKLQrsvEQEESKWKIKADESQrmIKQMQSSFTASERELERLRQENKDME 1147
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELE---EKEERLEELKKKLKE--LEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 651161708 1148 NLRRER-----EHLEMELEKAEMERSTYVMEVRELKTQLNEthskLQNEQTERKKVADDLHKAQ 1206
Cdd:PRK03918 376 RLKKRLtgltpEKLEKELEELEKAKEEIEEEISKITARIGE----LKKEIKELKKAIEELKKAK 435
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
324-529 |
1.36e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 324 KSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVviaRMKDRIGTLEKEHNIFQNkMHASYQE 403
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 404 TQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 483
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 651161708 484 QAATQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 529
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
910-1165 |
1.47e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 910 ELESVLKEKDNEikRIEVKLKDTeSDVSKMSELLKEVQEENKFLKCQLSHQKHQqasfpSQEELQTVISEK----EKEIT 985
Cdd:PRK05771 32 HIEDLKEELSNE--RLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEKKKVSVK-----SLEELIKDVEEElekiEKEIK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 986 DLCNELESLKNAVEhqrkknnERRQHVEAIE-LESKDLLkrlfptvsvPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKV 1064
Cdd:PRK05771 104 ELEEEISELENEIK-------ELEQEIERLEpWGNFDLD---------LSLLLGFKYVSVFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1065 LEHRLKEASEMHTLLQLeceKYKSVLAETEGILQKLqrSVEQEESKWKIKADESQRMIKQMQSSFtasERELERLRQE-- 1142
Cdd:PRK05771 168 NVEYISTDKGYVYVVVV---VLKELSDEVEEELKKL--GFERLELEEEGTPSELIREIKEELEEI---EKERESLLEElk 239
|
250 260
....*....|....*....|....*.
gi 651161708 1143 ---NKDMENLRREREHLEMELEKAEM 1165
Cdd:PRK05771 240 elaKKYLEELLALYEYLEIELERAEA 265
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
553-1191 |
1.54e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 553 LMQL--MESEQKRASKE----ESLQIQVQDILEQneaLKAQIQQ-----FHSQIAAQTSAsvlAEELHKVIAEKDKQLKQ 621
Cdd:PRK02224 158 LLQLgkLEEYRERASDArlgvERVLSDQRGSLDQ---LKAQIEEkeekdLHERLNGLESE---LAELDEEIERYEEQREQ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 622 TEDSLANEQDHLASKEEELKDVQNmnflLKAEVQKLQAlanEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVA-SKM 700
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELET----LEAEIEDLRE---TIAETEREREELAEEVRDLRERLEELEEERDDLLAeAGL 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 701 EELKI---------LSEQNKALQSEVQKLQTAVSQQPN-----KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREE 766
Cdd:PRK02224 305 DDADAeavearreeLEDRDEELRDRLEECRVAAQAHNEeaeslREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 767 ELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKdgqIKSVEELLEVELLKVANKEKTVQALK-----QEI 841
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER---EAELEATLRTARERVEEAEALLEAGKcpecgQPV 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 842 EvlKEEIGNAQLEKahqlsvTSQVQELQNLLRGKEEQVNSMKAALEdRDRDLRgrgtcaqvcstPQFEELESVLKEKDNE 921
Cdd:PRK02224 462 E--GSPHVETIEED------RERVEELEAELEDLEEEVEEVEERLE-RAEDLV-----------EAEDRIERLEERREDL 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 922 IKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQLSHQKHQQASFPSQEELQTViSEKEKEITDLCNELESLKNAVE-- 999
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEA--EAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESLERIRTll 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1000 -------HQRKKNNERRQHVEAIELESKDllkrlfptvsvpsnlnysewlrgfekkakacvagtsdaeavkvlehRLKEA 1072
Cdd:PRK02224 599 aaiadaeDEIERLREKREALAELNDERRE----------------------------------------------RLAEK 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1073 SEMHTLLQLECEKyksvlAETEGILQKLQRSVE-QEESKWKIKADESQRmiKQMQSSFTASERELERLRQENKDMENLRR 1151
Cdd:PRK02224 633 RERKRELEAEFDE-----ARIEEAREDKERAEEyLEQVEEKLDELREER--DDLQAEIGAVENELEELEELRERREALEN 705
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 651161708 1152 EREHLEMELEKAEMERSTYvMEVR-ELKTQLNETHSKLQNE 1191
Cdd:PRK02224 706 RVEALEALYDEAEELESMY-GDLRaELRQRNVETLERMLNE 745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
799-1004 |
1.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 799 IEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAH-QLSVTSQVQELQNLLRG--K 875
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 876 EEQVNSMKAAL--EDRDRDLRGRGTCAQVcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFL 953
Cdd:COG4942 116 LGRQPPLALLLspEDFLDAVRRLQYLKYL-----APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 651161708 954 KCQLSHQKHQQASFPSQE-ELQTVISEKEKEITDLCNELESLKNAVEHQRKK 1004
Cdd:COG4942 191 EALKAERQKLLARLEKELaELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
577-1025 |
2.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 577 ILEQNEALKAQIQQFHSQIaaqtsasvLAEELHKviaEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQK 656
Cdd:COG4717 28 IYGPNEAGKSTLLAFIRAM--------LLERLEK---EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 657 LQALANEQAATAHEVEKMQKSIHVKEDKIRLLE-----EQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQ--QPN 729
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEERLEELRELEEELEELEAElaELQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 730 KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ----------------- 792
Cdd:COG4717 177 EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAaleerlkearlllliaa 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 793 --VSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-----KAHQLSVTSQV 865
Cdd:COG4717 257 alLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEleellAALGLPPDLSP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 866 QELQNLLRgKEEQVNSMKAALEDRDRDLRgrgtcAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKE 945
Cdd:COG4717 337 EELLELLD-RIEELQELLREAEELEEELQ-----LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 946 VQEENKFLKCQLSHQKHQQASfPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNN--ERRQHVEAIELESKDLL 1023
Cdd:COG4717 411 LEELLGELEELLEALDEEELE-EELEELEEELEELEEELEELREELAELEAELEQLEEDGElaELLQELEELKAELRELA 489
|
..
gi 651161708 1024 KR 1025
Cdd:COG4717 490 EE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1055-1207 |
3.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1055 GTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkIKADESQRMIkqmqssfTASER 1134
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREI-------AELEA 675
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 651161708 1135 ELERLRQENKDMENLRRErehlemeLEKAEMERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1207
Cdd:COG4913 676 ELERLDASSDDLAALEEQ-------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED 741
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
294-783 |
3.70e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 294 LKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNK------GELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMT 367
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhltKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 368 EKERS-------SVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEaEIAHLKQENGILRDAVSNTT 440
Cdd:pfam05483 336 QMEELnkakaahSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE-EMTKFKNNKEVELEELKKIL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 441 NQlESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH-----E 515
Cdd:pfam05483 415 AE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNieltaH 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 516 AAQQDLQSKFVAKE--NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHS 593
Cdd:pfam05483 494 CDKLLLENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 594 QIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNM-NFLLKAEVQKLQALANEQAATAHEVE 672
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAeNKQLNAYEIKVNKLELELASAKQKFE 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 673 KM----QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNkdvveQMEKCIQEKDEKLR 748
Cdd:pfam05483 654 EIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH-----QYDKIIEERDSELG 728
|
490 500 510
....*....|....*....|....*....|....*
gi 651161708 749 TVEELLETGLIQVATREEELSAIRTENSTLTREVQ 783
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
612-815 |
4.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 612 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQnmnfllkaevQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQ 691
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL----------KQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 692 LQHEVASKMEELKILSEQNKALQ--SEVQKLQTAVSQQPNKD----------VVEQMEKCIQEKDEKLRTVEEL------ 753
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYrlGRQPPLALLLSPEDFLDavrrlqylkyLAPARREQAEELRADLAELAALraelea 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 651161708 754 ----LETGLIQVATREEELSAIRTE--------NSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKS 815
Cdd:COG4942 172 eraeLEALLAELEEERAALEALKAErqkllarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
547-663 |
4.64e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 547 QQLEQRLMQL------MESEQKRASKE--ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQ 618
Cdd:COG0542 414 DELERRLEQLeiekeaLKKEQDEASFErlAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 651161708 619 LKQTEDSLANEQDHLASK--EEELKDVQNM------NFLLKAEVQKLQALANE 663
Cdd:COG0542 494 LAELEEELAELAPLLREEvtEEDIAEVVSRwtgipvGKLLEGEREKLLNLEEE 546
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
602-774 |
5.39e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 602 SVLAEEL---HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmqksi 678
Cdd:PRK09039 42 FFLSREIsgkDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG----- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 679 hvkedKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDvveqmekciQEKDEKLRTVEELLE 755
Cdd:PRK09039 117 -----RAGELAQELdseKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD---------RESQAKIADLGRRLN 182
|
170
....*....|....*....
gi 651161708 756 TGLiqvATREEELSAIRTE 774
Cdd:PRK09039 183 VAL---AQRVQELNRYRSE 198
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
970-1210 |
5.78e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 970 QEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIElESKDLLKRLFPTVSvpsnlNYSEWLRGFEKKA 1049
Cdd:PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE-RAKQLCGLPDLTAD-----NAEDWLEEFQAKE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1050 KACvagtsdAEAVKVLEHRLKEASEMHTllQLEcEKYKSVLAetegILQKLQRSVEQEESKWKIKADESQRMIKQMQSSF 1129
Cdd:PRK04863 452 QEA------TEELLSLEQKLSVAQAAHS--QFE-QAYQLVRK----IAGEVSRSEAWDVARELLRRLREQRHLAEQLQQL 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1130 TASERELERLRQENKDMENLRRE-----------REHLEMELEKAEMER---STYVMEVRELKTQLNETHSKLQNEQTER 1195
Cdd:PRK04863 519 RMRLSELEQRLRQQQRAERLLAEfckrlgknlddEDELEQLQEELEARLeslSESVSEARERRMALRQQLEQLQARIQRL 598
|
250
....*....|....*
gi 651161708 1196 KKVADDLHKAQQSLN 1210
Cdd:PRK04863 599 AARAPAWLAAQDALA 613
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
482-597 |
6.53e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 482 AEQAATQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 651161708 560 EQKRASKEESLQIQVQDILEQNE--ALKAQIQQFHSQIAA 597
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
393-1263 |
6.77e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.19 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 393 FQNKMHASYQETQQMQMkfqqvqEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCG----RLVSELNEK 468
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMET------ATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKnkekELSNKINDY 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 469 TGKLQQEGVQKKNAEQAATQLKVQL-------QEAERRWEEVQSYIR----------KRTAEHEAAQQDLQSK---FVAK 528
Cdd:TIGR01612 775 AKEKDELNKYKSKISEIKNHYNDQInidnikdEDAKQNYDKSKEYIKtisikedeifKIINEMKFMKDDFLNKvdkFINF 854
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 529 EN----EVQSLHSKLTDtLVSKQQLEQRLMQLMESEQK-----------RASKEESLQ-----IQVQDILEQNEALKAQI 588
Cdd:TIGR01612 855 ENnckeKIDSEHEQFAE-LTNKIKAEISDDKLNDYEKKfndskslineiNKSIEEEYQnintlKKVDEYIKICENTKESI 933
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 589 QQFHSQiaaQTSASVLAEELHKVIAEKDKQLK----QTEDSLANEQDHL--ASKEEELKDVQNMNFLLKAEVQKLQAL-- 660
Cdd:TIGR01612 934 EKFHNK---QNILKEILNKNIDTIKESNLIEKsykdKFDNTLIDKINELdkAFKDASLNDYEAKNNELIKYFNDLKANlg 1010
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 661 ANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQH-EVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEkc 739
Cdd:TIGR01612 1011 KNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNiEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNE-- 1088
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 740 IQEKdEKLRTVEELLETGLIQVAtreEELSAIRTENSTLTREV-------QELKAKQSDQVSFV-SLIEDLKRVIHEK-- 809
Cdd:TIGR01612 1089 IKEK-LKHYNFDDFGKEENIKYA---DEINKIKDDIKNLDQKIdhhikalEEIKKKSENYIDEIkAQINDLEDVADKAis 1164
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 810 DGQIKSVEELLEVELLKVANKEKTVQALKQEI-EVLKEEIGNAQLEKAHQLSVtSQVQELQNLL--------RGKEEQVN 880
Cdd:TIGR01612 1165 NDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLnEIAEIEKDKTSLEEVKGINL-SYGKNLGKLFlekideekKKSEHMIK 1243
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 881 SMKAALEDRDRDLRgrgtcaqvcSTPQFEELESVLKEKDNEIKRIEV---KLKDTESDVSKMSELLKEVQeeNKFLKcqL 957
Cdd:TIGR01612 1244 AMEAYIEDLDEIKE---------KSPEIENEMGIEMDIKAEMETFNIshdDDKDHHIISKKHDENISDIR--EKSLK--I 1310
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 958 SHQKHQQASFPS-QEELQTVISEKEK---EITDLCNELESLKNAVEHQRKKN--NERRQHVEAIELESKDLLKRLFPTVS 1031
Cdd:TIGR01612 1311 IEDFSEESDINDiKKELQKNLLDAQKhnsDINLYLNEIANIYNILKLNKIKKiiDEVKEYTKEIEENNKNIKDELDKSEK 1390
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1032 VPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLE----HRLKEASEMHTLLQLECEKYKSVLAETEGI---------LQ 1098
Cdd:TIGR01612 1391 LIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKelknHILSEESNIDTYFKNADENNENVLLLFKNIemadnksqhIL 1470
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1099 KLQRSVEQEESKWKIKA-----DESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEME--LEKAEMERSTYV 1171
Cdd:TIGR01612 1471 KIKKDNATNDHDFNINElkehiDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKnkFAKTKKDSEIII 1550
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1172 MEVRELKTQL----NETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISP-------EMESPE 1240
Cdd:TIGR01612 1551 KEIKDAHKKFileaEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKkindclkETESIE 1630
|
970 980
....*....|....*....|...
gi 651161708 1241 KETMSVSLNQTVTQLQQLLQEVN 1263
Cdd:TIGR01612 1631 KKISSFSIDSQDTELKENGDNLN 1653
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
565-777 |
7.02e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 565 SKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-- 642
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEE---YNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 643 ---------VQNMNFLLKAE-----VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQhEVASKMEELKILSE 708
Cdd:COG3883 93 ralyrsggsVSYLDVLLGSEsfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLA-ELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 651161708 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
670-1206 |
8.57e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 670 EVEKMQKSIHVKEDKIRLLEEQLQHEVaskmeelkilsEQNKALQSEVQKLQTAVSQQPNKDVVEQmeKCIQEKDEKLRT 749
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDE-----------EKINNSNNKIKILEQQIKDLNDKLKKNK--DKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 750 VEELLETGLIQVATREEELSAIRTE----NSTLTREVQELKAKQSDQVSFVSLIEDLKRvihekdgQIKSVEELLEVELL 825
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQkkenKKNIDKFLTEIKKKEKELEKLNNKYNDLKK-------QKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 826 KVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCST 905
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 906 PQFEELESvLKEKDNEIKRIEVKLKDTESDV----SKMSELLKEVQEE-NKFLKCQLSHQKHQQasfpsqEELQTVISEK 980
Cdd:TIGR04523 261 EQNKIKKQ-LSEKQKELEQNNKKIKELEKQLnqlkSEISDLNNQKEQDwNKELKSELKNQEKKL------EEIQNQISQN 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 981 EKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAE 1060
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE---------NQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1061 AV-KVLEHRLKEASEMHTLLQLECEKYKSV----------LAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSF 1129
Cdd:TIGR04523 405 KLnQQKDEQIKKLQQEKELLEKEIERLKETiiknnseikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 651161708 1130 TASERELErlrQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQ 1206
Cdd:TIGR04523 485 EQKQKELK---SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN 558
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
745-1263 |
9.06e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.19 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 745 EKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIH-EKDGQIKSVEELLEVE 823
Cdd:pfam10174 60 EQYRVTQEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQsEHERQAKELFLLRKTL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 824 LLKVANKEKTVQALKQEIEVLKEEIGNAQlEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRD-------LRGR 896
Cdd:pfam10174 140 EEMELRIETQKQTLGARDESIKKLLEMLQ-SKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKEnihlreeLHRR 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 897 GTCAQvcSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVS--KMSELL--KEVQEENKFLKCQLSHQKHQQASFpsqEE 972
Cdd:pfam10174 219 NQLQP--DPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQmlKTNGLLhtEDREEEIKQMEVYKSHSKFMKNKI---DQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 973 LQTVISEKEKEITDLCNELESLKNavehqrkKNNERRQHVEAIE--LESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAK 1050
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTN-------QNSDCKQHIEVLKesLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1051 acvagtsdaeavkvlehRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVE--QEESKWKIKA-DESQRMIKQMQS 1127
Cdd:pfam10174 367 -----------------QLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEnlQEQLRDKDKQlAGLKERVKSLQT 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651161708 1128 SFTASEREL----ERLRQENKDMENLRREREHLEMELEKaemERSTYVMEVRELKTQLnethSKLQNEQTERKKVADDLH 1203
Cdd:pfam10174 430 DSSNTDTALttleEALSEKERIIERLKEQREREDRERLE---ELESLKKENKDLKEKV----SALQPELTEKESSLIDLK 502
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 651161708 1204 KAQQSLNSIHSKISLKAAGDTVVIENS-DISPEMESPEKETMSVSLNQT-----VTQLQQLLQEVN 1263
Cdd:pfam10174 503 EHASSLASSGLKKDSKLKSLEIAVEQKkEECSKLENQLKKAHNAEEAVRtnpeiNDRIRLLEQEVA 568
|
|
| |
