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Conserved domains on  [gi|665821213|ref|NP_001287817|]
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protein PBDC1 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Polysacc_synt_4 super family cl04661
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-100 7.22e-12

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


The actual alignment was detected with superfamily member pfam04669:

Pssm-ID: 383809  Cd Length: 177  Bit Score: 61.74  E-value: 7.22e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665821213   35 IEMAWAMRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFRKNFETLRI-------DVLDPEELKSESAKEP 100
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEAyhvayntKVLDADELKSAAKKRP 79
 
Name Accession Description Interval E-value
Polysacc_synt_4 pfam04669
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-100 7.22e-12

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


Pssm-ID: 368048  Cd Length: 177  Bit Score: 61.74  E-value: 7.22e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665821213   35 IEMAWAMRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFRKNFETLRI-------DVLDPEELKSESAKEP 100
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEAyhvayntKVLDADELKSAAKKRP 79
 
Name Accession Description Interval E-value
Polysacc_synt_4 pfam04669
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-100 7.22e-12

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


Pssm-ID: 368048  Cd Length: 177  Bit Score: 61.74  E-value: 7.22e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665821213   35 IEMAWAMRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFRKNFETLRI-------DVLDPEELKSESAKEP 100
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEAyhvayntKVLDADELKSAAKKRP 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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