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Conserved domains on  [gi|1003088772|ref|NP_001307754|]
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WD repeat-containing protein 54 isoform c [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1903264)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  30069656|29026209
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl43672
WD40 repeat [General function prediction only];
60-230 3.10e-07

WD40 repeat [General function prediction only];


The actual alignment was detected with superfamily member COG2319:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 50.29  E-value: 3.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  60 SGDASPVQAVfarGIAASGHFICVGTWSGRVLVFDIPAKgpniVLSEELAGHQMPITDIATEPaQGQDcvadMVTADDSG 139
Cdd:COG2319   243 TGHSGSVRSV---AFSPDGRLLASGSADGTVRLWDLATG----ELLRTLTGHSGGVNSVAFSP-DGKL----LASGSDDG 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 140 LLCVWrSGPEFTLLTRIPGFGVPCPSVQL--WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLS 217
Cdd:COG2319   311 TVRLW-DLATGKLLRTLTGHTGAVRSVAFspDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLAS 389

                         170
                  ....*....|...
gi 1003088772 218 AGEDTFVHIWKLS 230
Cdd:COG2319   390 GSADGTVRLWDLA 402
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
60-230 3.10e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 50.29  E-value: 3.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  60 SGDASPVQAVfarGIAASGHFICVGTWSGRVLVFDIPAKgpniVLSEELAGHQMPITDIATEPaQGQDcvadMVTADDSG 139
Cdd:COG2319   243 TGHSGSVRSV---AFSPDGRLLASGSADGTVRLWDLATG----ELLRTLTGHSGGVNSVAFSP-DGKL----LASGSDDG 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 140 LLCVWrSGPEFTLLTRIPGFGVPCPSVQL--WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLS 217
Cdd:COG2319   311 TVRLW-DLATGKLLRTLTGHTGAVRSVAFspDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLAS 389

                         170
                  ....*....|...
gi 1003088772 218 AGEDTFVHIWKLS 230
Cdd:COG2319   390 GSADGTVRLWDLA 402
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 77-228 6.26e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 49.26  E-value: 6.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  77 SGHFICVGTWSGRVLVFDIPakgpNIVLSEELAGHQMPITDIATEPAQGQdcvadMVTADDSGLLCVWRSgPEFTLLTRI 156
Cdd:cd00200   146 DGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDL-STGKCLGTL 215

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003088772 157 PGFGVPCPSVQL--WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWK 228
Cdd:cd00200   216 RGHENGVNSVAFspDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
60-230 3.10e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 50.29  E-value: 3.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  60 SGDASPVQAVfarGIAASGHFICVGTWSGRVLVFDIPAKgpniVLSEELAGHQMPITDIATEPaQGQDcvadMVTADDSG 139
Cdd:COG2319   243 TGHSGSVRSV---AFSPDGRLLASGSADGTVRLWDLATG----ELLRTLTGHSGGVNSVAFSP-DGKL----LASGSDDG 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 140 LLCVWrSGPEFTLLTRIPGFGVPCPSVQL--WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLS 217
Cdd:COG2319   311 TVRLW-DLATGKLLRTLTGHTGAVRSVAFspDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLAS 389

                         170
                  ....*....|...
gi 1003088772 218 AGEDTFVHIWKLS 230
Cdd:COG2319   390 GSADGTVRLWDLA 402
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 77-228 6.26e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 49.26  E-value: 6.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  77 SGHFICVGTWSGRVLVFDIPakgpNIVLSEELAGHQMPITDIATEPAQGQdcvadMVTADDSGLLCVWRSgPEFTLLTRI 156
Cdd:cd00200   146 DGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDL-STGKCLGTL 215

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003088772 157 PGFGVPCPSVQL--WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWK 228
Cdd:cd00200   216 RGHENGVNSVAFspDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
57-230 1.38e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 42.59  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  57 ALDSGDASPVQAVfarGIAASGHFICVGTWSGRVLVFDIpAKGPNIvlsEELAGHQMPITDIATEPaQGQDcvadMVTAD 136
Cdd:COG2319   114 RTLTGHTGAVRSV---AFSPDGKTLASGSADGTVRLWDL-ATGKLL---RTLTGHSGAVTSVAFSP-DGKL----LASGS 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 137 DSGLLCVWRSgPEFTLLTRIPGFGVPCPSVQLWQG--IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLaSEVGK 214
Cdd:COG2319   182 DDGTVRLWDL-ATGKLLRTLTGHTGAVRSVAFSPDgkLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAF-SPDGR 259

                         170
                  ....*....|....*..
gi 1003088772 215 LL-SAGEDTFVHIWKLS 230
Cdd:COG2319   260 LLaSGSADGTVRLWDLA 276
WD40 COG2319
WD40 repeat [General function prediction only];
68-234 2.77e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.44  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  68 AVFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSeelaGHQMPITDIATEPaQGQDcvadMVTADDSGLLCVW--R 145
Cdd:COG2319    80 AVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLT----GHTGAVRSVAFSP-DGKT----LASGSADGTVRLWdlA 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 146 SGpefTLLTRIPGFGVPCPSVQLWQG--IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEvGKLL-SAGEDT 222
Cdd:COG2319   151 TG---KLLRTLTGHSGAVTSVAFSPDgkLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPD-GKLLaSGSADG 226

                         170
                  ....*....|..
gi 1003088772 223 FVHIWKLSRNPE 234
Cdd:COG2319   227 TVRLWDLATGKL 238
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 74-241 1.24e-03

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 39.24  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772  74 IAASGHFICVGTWSGRVLVFDIPakgpNIVLSEELAGHQMPITDIAtepaqgqdCVAD---MVTADDSGLLCVWRSGpEF 150
Cdd:cd00200    17 FSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVA--------ASADgtyLASGSSDKTIRLWDLE-TG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 151 TLLTRIPGF--GVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLaSEVGKLLSAG-EDTFVHIW 227
Cdd:cd00200    84 ECVRTLTGHtsYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASSsQDGTIKLW 162

                         170
                  ....*....|....
gi 1003088772 228 klsrNPESGYIEAT 241
Cdd:cd00200   163 ----DLRTGKCVAT 172
WD40 COG2319
WD40 repeat [General function prediction only];
103-230 7.84e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 37.20  E-value: 7.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003088772 103 VLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQV 182
Cdd:COG2319    23 AALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTV 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1003088772 183 HLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLS 230
Cdd:COG2319   103 RLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLA 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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