NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1017029453|ref|NP_001309386|]
View 

keratin-associated protein 4-8 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Keratin_B2 super family cl37504
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 42-155 1.98e-13

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


The actual alignment was detected with superfamily member pfam01500:

Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  42 PSYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQC---CQSVCCQPTCCHPSCCISSC--------- 109
Cdd:pfam01500  12 PTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTCqpcCQTSCCQPTCCQTSSCQTGCggigygqeg 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1017029453 110 -----------CRPSCCVSSCCKPQCCQSVCCQPTCCHPSCSISSCCRPSCCESSCC 155
Cdd:pfam01500  92 ssgavssrtrwCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCC 148
 
Name Accession Description Interval E-value
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 42-155 1.98e-13

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  42 PSYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQC---CQSVCCQPTCCHPSCCISSC--------- 109
Cdd:pfam01500  12 PTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTCqpcCQTSCCQPTCCQTSSCQTGCggigygqeg 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1017029453 110 -----------CRPSCCVSSCCKPQCCQSVCCQPTCCHPSCSISSCCRPSCCESSCC 155
Cdd:pfam01500  92 ssgavssrtrwCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCC 148
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
48-133 3.69e-08

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 52.25  E-value: 3.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  48 CCCRPQCCqsVCCQPTCCRPRCCISSCCRPSCCvssCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCcvssCCKPQCCQS 127
Cdd:COG3901   604 FFFRRLCL--LGLALAAAALARRRLWRRRRREC---CCGCCCCCCKCCCIVIIIDGIIIINECCCCC----CLCCRRCQD 674


                  ....*.
gi 1017029453 128 VCCQPT 133
Cdd:COG3901   675 DPLCPP 680
 
Name Accession Description Interval E-value
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 42-155 1.98e-13

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  42 PSYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQC---CQSVCCQPTCCHPSCCISSC--------- 109
Cdd:pfam01500  12 PTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTCqpcCQTSCCQPTCCQTSSCQTGCggigygqeg 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1017029453 110 -----------CRPSCCVSSCCKPQCCQSVCCQPTCCHPSCSISSCCRPSCCESSCC 155
Cdd:pfam01500  92 ssgavssrtrwCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCC 148
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
69-113 7.49e-13

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 60.09  E-value: 7.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1017029453  69 CCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPSCCISSCCRPS 113
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
89-133 1.11e-12

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 59.70  E-value: 1.11e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1017029453  89 CCQSVCCQPTCCHPSCCISSCCRPSCCVSSCCKPQCCQSVCCQPT 133
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 54-195 1.49e-12

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 62.50  E-value: 1.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  54 CCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPSCCISSCcrPSCCVSSCCKPQCCQSVCCQPT 133
Cdd:pfam01500   4 CGTSFCGFPTCSTGGTCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTC--QPCCQTSCCQPTCCQTSSCQTG 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1017029453 134 CCHPSCSISSCCRPSCCESSCCRPCCCVRPVCGRVSCHTTCYRPTC-----VISTCPRPVCCASSCC 195
Cdd:pfam01500  82 CGGIGYGQEGSSGAVSSRTRWCRPDCRVEGTCLPPCCVVSCTPPTCcqlhhAQASCCRPSYCGQSCC 148
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
59-103 1.53e-12

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 59.32  E-value: 1.53e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1017029453  59 CCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPS 103
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 3-129 4.51e-12

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 4.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453   3 NSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCyrpsysvscccrPQCCQSVCCQPTCCRPRCCISSC-------- 74
Cdd:pfam01500  23 GCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTC------------QPCCQTSCCQPTCCQTSSCQTGCggigygqe 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1017029453  75 ------------CRPSCCVSSCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCCVSSCCKPQCCQSVC 129
Cdd:pfam01500  91 gssgavssrtrwCRPDCRVEGTCLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCCRPACCCQCS 157
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
49-93 5.66e-12

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 57.78  E-value: 5.66e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1017029453  49 CCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSV 93
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
79-122 1.22e-11

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 57.01  E-value: 1.22e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1017029453  79 CCVSSCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCCVSSCCKP 122
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQP 44
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
47-87 5.87e-10

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 52.77  E-value: 5.87e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1017029453  47 SCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKP 87
Cdd:pfam13885   4 PSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQP 44
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 5-114 5.93e-10

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 55.57  E-value: 5.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453   5 CCGSVCSDQG-CGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRPQC---CQSVCCQPTCCRPRCCISSC------ 74
Cdd:pfam01500   9 CGFPTCSTGGtCGSGCCQPCCCQSSCCRPSCCQTSCCQPTTFQSSCCRPTCqpcCQTSCCQPTCCQTSSCQTGCggigyg 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1017029453  75 ------------------------CRPSCCVSSCCKPQCCQSV-----CCQPTCCHPSCCISSCCRPSC 114
Cdd:pfam01500  89 qegssgavssrtrwcrpdcrvegtCLPPCCVVSCTPPTCCQLHhaqasCCRPSYCGQSCCRPACCCQCS 157
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
48-133 3.69e-08

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 52.25  E-value: 3.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  48 CCCRPQCCqsVCCQPTCCRPRCCISSCCRPSCCvssCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCcvssCCKPQCCQS 127
Cdd:COG3901   604 FFFRRLCL--LGLALAAAALARRRLWRRRRREC---CCGCCCCCCKCCCIVIIIDGIIIINECCCCC----CLCCRRCQD 674


                  ....*.
gi 1017029453 128 VCCQPT 133
Cdd:COG3901   675 DPLCPP 680
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
41-78 2.69e-07

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 45.45  E-value: 2.69e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1017029453  41 RPSYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPS 78
Cdd:pfam13885   8 QPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
104-134 1.15e-05

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 41.21  E-value: 1.15e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1017029453 104 CCISSCCRPSCCVSSCCKPQCCQSVCCQPTC 134
Cdd:pfam13885   1 CCQPSCCQPSCCQPSCCQPSCCQPSCCQPSC 31
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
59-131 1.65e-05

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 44.54  E-value: 1.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1017029453  59 CCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCCvsSCCKPQCCQSVCCQ 131
Cdd:COG3901   603 FFFFRRLCLLGLALAAAALARRRLWRRRRRECCCGCCCCCCKCCCIVIIIDGIIIIN--ECCCCCCLCCRRCQ 673
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
48-100 3.26e-05

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 43.77  E-value: 3.26e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1017029453  48 CCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCcvssCCKPQCCQSVCCQPTCC 100
Cdd:COG3901   634 CCCGCCCCCCKCCCIVIIIDGIIIINECCCCC----CLCCRRCQDDPLCPPRI 682
PMG pfam05287
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 60-180 2.17e-04

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 40.18  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  60 CQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQP-TCCHPSCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPS 138
Cdd:pfam05287  56 CQETCGEPTSCQTSSCEPCTSSTSYCVPSPCQRSCYSPrTSCVCSPCQTTSAGSLGFGSSSCQSLGYGSNSCQPLGCGSS 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1017029453 139 CSISSCCRPSCCESSCCRPCCCVRPVCGRVSCHTTCYRPTCV 180
Cdd:pfam05287 136 GFRPLGCLSKGFQSLGYGSSFCRPSYVSSRSYQPSCFRPSCG 177
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
18-119 2.04e-03

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 38.08  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  18 DLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQP 97
Cdd:COG4624     2 LLLLRACCCCCIEEGDELLLLEEAERVLRIIILEALLPEHVDDDSACSCCPRCCLCCCCCCRCCVAISCIQVRGIIIIDK 81

                          90       100
                  ....*....|....*....|..
gi 1017029453  98 TCCHPSCCISSCCRPSCCVSSC 119
Cdd:COG4624    82 RGPSIIRDKEKCKNCYPCVRAC 103
PMG pfam05287
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 3-135 3.29e-03

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 36.72  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453   3 NSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCrttcyRPSYSVSCCCRPQCCQSVCCQP-TCCRPRCCISSCCRPSCCV 81
Cdd:pfam05287  39 DLCSPSSCQLGSSLRDNCQETCGEPTSCQTSSC-----EPCTSSTSYCVPSPCQRSCYSPrTSCVCSPCQTTSAGSLGFG 113

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1017029453  82 SSCCKPQCCQSVCCQPTCCHPSC-----CISSCCRPSCCVSSCCKPQCCQSVCCQPTCC 135
Cdd:pfam05287 114 SSSCQSLGYGSNSCQPLGCGSSGfrplgCLSKGFQSLGYGSSFCRPSYVSSRSYQPSCF 172
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
20-63 4.61e-03

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 33.89  E-value: 4.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1017029453  20 CQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRPQCCQSVCCQPT 63
Cdd:pfam13885   2 CQPSCCQPSCCQPSCCQPSCCQPSCCQPSCCRPSCCRSSCCQPT 45
PMG pfam05287
PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and ...
 43-194 7.16e-03

PMG protein; This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteriztic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages.


Pssm-ID: 283053 [Multi-domain]  Cd Length: 180  Bit Score: 35.95  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453  43 SYSVSCCCRPQCCQSVCCQPTCCRPRCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPSCCISSCCRPSCCVSSC--- 119
Cdd:pfam05287  14 SLRNHLHYPVSSCGSSCPSNLSYSTDLCSPSSCQLGSSLRDNCQETCGEPTSCQTSSCEPCTSSTSYCVPSPCQRSCysp 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029453 120 ---CKPQCCQSVCCQPTCCHPSCSISSCCRPSCCESSCCRPCCCVRPVCGRVSCH-----TTCYRPTCVISTCPRPVCCA 191
Cdd:pfam05287  94 rtsCVCSPCQTTSAGSLGFGSSSCQSLGYGSNSCQPLGCGSSGFRPLGCLSKGFQslgygSSFCRPSYVSSRSYQPSCFR 173


                  ...
gi 1017029453 192 SSC 194
Cdd:pfam05287 174 PSC 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH