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Conserved domains on  [gi|1186128430|ref|NP_001337799|]
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sorting nexin-13 isoform g [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PXA super family cl02564
PXA domain; This domain is associated with PX domains pfam00787.
 97-149 1.05e-20

PXA domain; This domain is associated with PX domains pfam00787.


The actual alignment was detected with superfamily member smart00313:

Pssm-ID: 470618  Cd Length: 176  Bit Score: 84.39  E-value: 1.05e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1186128430   97 ANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRVS 149
Cdd:smart00313   1 PAQLEEPLQLLISKIIRDYVQGWYKGVSEDPSFLREIEQTLEYILRQLYRRLS 53
 
Name Accession Description Interval E-value
PXA smart00313
Domain associated with PX domains; unpubl. observations
 97-149 1.05e-20

Domain associated with PX domains; unpubl. observations


Pssm-ID: 214611  Cd Length: 176  Bit Score: 84.39  E-value: 1.05e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1186128430   97 ANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRVS 149
Cdd:smart00313   1 PAQLEEPLQLLISKIIRDYVQGWYKGVSEDPSFLREIEQTLEYILRQLYRRLS 53
PXA pfam02194
PXA domain; This domain is associated with PX domains pfam00787.
 98-149 5.04e-14

PXA domain; This domain is associated with PX domains pfam00787.


Pssm-ID: 460484  Cd Length: 181  Bit Score: 66.87  E-value: 5.04e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1186128430  98 NIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRVS 149
Cdd:pfam02194   2 PEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLR 53
 
Name Accession Description Interval E-value
PXA smart00313
Domain associated with PX domains; unpubl. observations
 97-149 1.05e-20

Domain associated with PX domains; unpubl. observations


Pssm-ID: 214611  Cd Length: 176  Bit Score: 84.39  E-value: 1.05e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1186128430   97 ANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRVS 149
Cdd:smart00313   1 PAQLEEPLQLLISKIIRDYVQGWYKGVSEDPSFLREIEQTLEYILRQLYRRLS 53
PXA pfam02194
PXA domain; This domain is associated with PX domains pfam00787.
 98-149 5.04e-14

PXA domain; This domain is associated with PX domains pfam00787.


Pssm-ID: 460484  Cd Length: 181  Bit Score: 66.87  E-value: 5.04e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1186128430  98 NIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRVS 149
Cdd:pfam02194   2 PEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLR 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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