|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-408 |
5.16e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISfQDRYKELQEKHKQELEDMRKAGHEALSI 212
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL-LAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 213 IVDEYKALLQ-SSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRL-LEMLDTEKELLKEKIKEALIQQSQEQKEILEK 290
Cdd:COG1196 322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 291 CLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAhAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETV 370
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270
....*....|....*....|....*....|....*...
gi 1200742253 371 KAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 408
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
132-388 |
5.93e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALS 211
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 212 IIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAhkceellnAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEkc 291
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAE--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEE-- 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 292 LEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVK 371
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
250
....*....|....*..
gi 1200742253 372 AAIIEEQKRSEKAVEEA 388
Cdd:COG1196 527 AVLIGVEAAYEAALEAA 543
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-413 |
5.83e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 144 KLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVD-EYKALLQ 222
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDiARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 223 SSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQrlLEMLDTEKELLKEKIKEALIQQSQEQKEILEKclEEERQRNKEA 302
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELEEAEAELAEAEEALLEAEAELAEA--EEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 303 LVSAAKLEKEAVKDavlkvvEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSE 382
Cdd:COG1196 388 LLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|.
gi 1200742253 383 KAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 413
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-439 |
6.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 6.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 174 LKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNA 253
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 254 QHQRLLEMLDTEKELLKEkikealIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDavlkvvEEERKNLEKAH 333
Cdd:COG1196 314 LEERLEELEEELAELEEE------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------EAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 334 AEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 413
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260
....*....|....*....|....*.
gi 1200742253 414 SLSSLELFLSCAQKQLSALIATEPVD 439
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELA 487
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-428 |
6.04e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 6.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 135 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAgHEALSII 213
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA-DEAKKKA 1453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 214 VDEYKAllQSSVKQQVEAIEKQYISAIEKQAHKCEELlNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLE 293
Cdd:PTZ00121 1454 EEAKKA--EEAKKKAEEAKKADEAKKKAEEAKKADEA-KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 294 EERQRNKEALVSAAKLEKEAVKDAV-LKVVEEERKNLEKAHAEERELWKTEHA----KDQEKVSQEIQKAIQEQRKISQE 368
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEeLKKAEEKKKAEEAKKAEEDKNMALRKAeeakKAEEARIEEVMKLYEEEKKMKAE 1610
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 369 TVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQ 428
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-441 |
7.40e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 149 EEEKQRIKQ-DVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGhealsiIVDEYKALLQSSVKQ 227
Cdd:pfam17380 347 ERELERIRQeERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVK------ILEEERQRKIQQQKV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 228 QVEAIEKQYISAIEKQAHKCEEllnaQHQRLLEMLDTEkELLKEKIKEALIQQSQEQKeilEKCLEEERQRNKEALVSaa 307
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEE----ERAREMERVRLE-EQERQQQVERLRQQEEERK---RKKLELEKEKRDRKRAE-- 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 308 klekeavkdavlkvvEEERKNLEKAHAEERELWKTEHAKDQ--EKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAV 385
Cdd:pfam17380 491 ---------------EQRRKILEKELEERKQAMIEEERKRKllEKEMEERQKAIYEEE-------RRREAEEERRKQQEM 548
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1200742253 386 EEAvKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 441
Cdd:pfam17380 549 EER-RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
142-407 |
2.42e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 142 EIKLKVSEEEKQRIKQDVESLmEKHNVLEKGFLKEKEQEAISFQDRyKELQEKHKQELEDMRKAGHEALSIIVDEYKALL 221
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADEL-KKAEELKKAEEKKKAEEAKKAEED-KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 222 QSSVKQQVEA-IEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQ--KEILEKCLEEERQR 298
Cdd:PTZ00121 1609 AEEAKKAEEAkIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkKKAEEAKKAEEDEK 1688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 299 NKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAI 374
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
250 260 270
....*....|....*....|....*....|....*
gi 1200742253 375 IEEQKRSEK--AVEEAVKRtRDELIEYIKEQKRLD 407
Cdd:PTZ00121 1769 KAEEIRKEKeaVIEEELDE-EDEKRRMEVDKKIKD 1802
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
146-391 |
2.78e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 146 KVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQEL---EDMRKAgHEALSIIVDEYKALLQ 222
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaEEKKKA-EEAKKAEEDKNMALRK 1582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 223 SSVKQQVEA--IEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK 300
Cdd:PTZ00121 1583 AEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 301 EALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE----KVSQEIQKAiQEQRKISQETVKAAIIE 376
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKA-EEENKIKAEEAKKEAEE 1741
|
250
....*....|....*.
gi 1200742253 377 EQKRSEKA-VEEAVKR 391
Cdd:PTZ00121 1742 DKKKAEEAkKDEEEKK 1757
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
165-412 |
1.87e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 165 KHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEalsiivdeyKALLQSSVKQQVEAIEKQYISAIEKQA 244
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE---------LSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 245 HKCEELLNAQHQRllEMLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALvSAAKLEKEAVKDAVLKVVEE 324
Cdd:TIGR02168 751 QLSKELTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQ--LKEELKALREAL-DELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 325 ERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQK 404
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELR 904
|
....*...
gi 1200742253 405 RLDQVIRQ 412
Cdd:TIGR02168 905 ELESKRSE 912
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
190-412 |
2.47e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 190 ELQEKHKQELEDMRKAGHEALSIIVDEYKAllQSSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRLlemldTEKELL 269
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE--EKALLKQLAALERR-IAALARRIRALEQELAALEAEL-----AELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 270 KEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEER-ELWKTEHAKDQ 348
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLaELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1200742253 349 EKVSQEIQKAIQEQRKISQETVKAaiieEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 412
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
133-407 |
5.94e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESL------MEKHNVLEKGFLKEKEQEAISFQDRYkELQEKHKQELEDMRKAG 206
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLrkeleeLSRQISALRKDLARLEAEVEQLEERI-AQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 207 HEALSIIVDEYKALLQ--SSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKI-KEALIQQSQE 283
Cdd:TIGR02168 767 EERLEEAEEELAEAEAeiEELEAQIEQLKEE-LKALREALDELRAELTLLNEEAANLRERLESLERRIAaTERRLEDLEE 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 284 QKEILEKCLEEERQRNKEALVSAAKLEKEavkdavLKVVEEERKNLEKAHAEERElwktehakDQEKVSQEIQKAIQEQR 363
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESE------LEALLNERASLEEALALLRS--------ELEELSEELRELESKRS 911
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1200742253 364 KISQETVKAaiiEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLD 407
Cdd:TIGR02168 912 ELRRELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-413 |
6.81e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 6.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 149 EEEKQRIKQDVESLMEKHNVLEKgfLKEKEQEAIsfqdRYKELQEKhKQELEdmrkagheaLSIIVDEYKALLQssvkqQ 228
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLER--LRREREKAE----RYQALLKE-KREYE---------GYELLKEKEALER-----Q 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 229 VEAIEKQyISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAlvsAAK 308
Cdd:TIGR02169 239 KEAIERQ-LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA---EKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 309 LEKEAVKDAVLKVVEEERKNLEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEqkrsekaVEEA 388
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREI--EEERKRRDKLTEEYAELKEELEDLRAE------LEE-------VDKE 379
|
250 260
....*....|....*....|....*
gi 1200742253 389 VKRTRDELIEYikeQKRLDQVIRQR 413
Cdd:TIGR02169 380 FAETRDELKDY---REKLEKLKREI 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
144-405 |
8.53e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 144 KLKVSEEEKQRIKQDVESLMEKHNVLEKgflkekEQEAISFQDRYKELQEKHKQELEDMRKAghEALSIIVDEYKALLQS 223
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKK------KAEEKKKADEAKKKAEEDKKKADELKKA--AAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 224 SVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAL 303
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 304 VSAAKLEK--EAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAKDQEKV--SQEIQKAIQEQRKISQETVKAAIIEEQK 379
Cdd:PTZ00121 1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELkkAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
250 260
....*....|....*....|....*.
gi 1200742253 380 RSEKAVEEAVKRTRDELIEYIKEQKR 405
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
133-404 |
1.15e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGF-------------LKEKEQEAISFQDRYKELQEKHKQEL 199
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIeelqkelyalaneISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 200 EDMRKAGHEAlsiivDEYKALLQsSVKQQVEAIEKQYISAIEKQAHKCEELLNAqhQRLLEMLDTEKELLKEKIKEALIQ 279
Cdd:TIGR02168 323 AQLEELESKL-----DELAEELA-ELEEKLEELKEELESLEAELEELEAELEEL--ESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 280 QSQEQKEILE-----KCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEhakdqEKVSQE 354
Cdd:TIGR02168 395 IASLNNEIERlearlERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL-----EELREE 469
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1200742253 355 IQKAIQEQRKISQEtvkaaiiEEQKRSEKAVEEAVKRTRDELIEYIKEQK 404
Cdd:TIGR02168 470 LEEAEQALDAAERE-------LAQLQARLDSLERLQENLEGFSEGVKALL 512
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
165-409 |
1.95e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 165 KHNVLEKGFLKEKEQEAISFQDRYKelQEKHKQELEDMRKAghEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQA 244
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKK--ADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 245 HKcEELLNAQHQRLLEMLDTEKEllkEKIKEALIQQSQEQK--EILEKCLEEERQRNKEalvsAAKLEKEAVKDAVLKVV 322
Cdd:PTZ00121 1355 AA-DEAEAAEEKAEAAEKKKEEA---KKKADAAKKKAEEKKkaDEAKKKAEEDKKKADE----LKKAAAAKKKADEAKKK 1426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 323 EEERKNLEKAHAEERELWKTEHAK---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEA--VKRTRDELI 397
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKkkaEEAKKAEEAKKKAEEAKKADEAKKKA---EEAKKADEAKKKAeeAKKKADEAK 1503
|
250
....*....|..
gi 1200742253 398 EYIKEQKRLDQV 409
Cdd:PTZ00121 1504 KAAEAKKKADEA 1515
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
189-412 |
2.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 189 KELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKEL 268
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 269 LKEKIKEALiQQSQEQKEILEKCLEEERQRNKEALVSAAKLEK-EAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAK- 346
Cdd:PTZ00121 1320 AKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKk 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 347 ---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEAV-KRTRDELIEYIKEQKRLDQVIRQ 412
Cdd:PTZ00121 1399 kaeEDKKKADELKKAAAAKKKADEAKKKA---EEKKKADEAKKKAEeAKKADEAKKKAEEAKKAEEAKKK 1465
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-331 |
4.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 145 LKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMR--KAGHEALSIIVDEYKALLQ 222
Cdd:COG4913 254 LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELErlEARLDALREELDELEAQIR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 223 SSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRL----LEMLDTEKELlkekikEALIQQSQEQKEILEKCLEEERQR 298
Cdd:COG4913 334 GNGGDRLEQLERE-IERLERELEERERRRARLEALLaalgLPLPASAEEF------AALRAEAAALLEALEEELEALEEA 406
|
170 180 190
....*....|....*....|....*....|...
gi 1200742253 299 NKEALVSAAKLEKEavkdavLKVVEEERKNLEK 331
Cdd:COG4913 407 LAEAEAALRDLRRE------LRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
133-397 |
4.52e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELQEKHKQeledmrkaghealsi 212
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAELAELEKEIAE--------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 213 ivdeykalLQSSVKQQVEAIEKQyISAIEK--QAHKCEELLNA----QHQRLLEMLDTEKELLKEKIKEalIQQSQEQKE 286
Cdd:COG4942 95 --------LRAELEAQKEELAEL-LRALYRlgRQPPLALLLSPedflDAVRRLQYLKYLAPARREQAEE--LRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 287 ILEKCLEEERQRnkealvsaaklekeavKDAVLKVVEEERKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKIs 366
Cdd:COG4942 164 ALRAELEAERAE----------------LEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL- 225
|
250 260 270
....*....|....*....|....*....|.
gi 1200742253 367 QETVKAAIIEEQKRSEKAVEEAVKRTRDELI 397
Cdd:COG4942 226 EALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
133-341 |
5.53e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 5.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 212
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 213 ivdeykALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEaliqqsQEQKEILEKCL 292
Cdd:TIGR02168 399 ------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE------LERLEEALEEL 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1200742253 293 EEERQRNKEALVSAAklEKEAVKDAVLKVVEEERKNLEKAHAEERELWK 341
Cdd:TIGR02168 467 REELEEAEQALDAAE--RELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
200-408 |
1.25e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 200 EDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQyisaieKQAHKCEELLNAQHQRLLEMLDTEKELLKekiKEALIQ 279
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKA------EEERKAEEARKAEDAKKAEAVKKAEEAKK---DAEEAK 1243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 280 QSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAK---DQEKVSQEIQ 356
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK--KADEAKkkaEEAKKADEAK 1321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1200742253 357 KAIQEQRKISQETVKAAiiEEQKRSEKAVEEAVKRTRDELiEYIKEQKRLDQ 408
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKA--EEAKKAAEAAKAEAEAAADEA-EAAEEKAEAAE 1370
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
144-360 |
1.65e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 144 KLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAisFQDRYKELQEKHKQELEDMRKaghealsiivDEYKALLQS 223
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQ--------IRAEQEEA--RQREVRRLEEERAREMERVRL----------EEQERQQQV 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 224 SVKQQVEAIEKQYISAIEKQAHKcEELLNAQHQRLLE--MLDTEKELLKEKIKEALIQQSQE--QKEILEkclEEERQRN 299
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKILEkeLEERKQAMIEEERKRKLLEKEMEerQKAIYE---EERRREA 538
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1200742253 300 KEALVSAAKLEKEAVKDAVLKVVEEERKNLEkahAEERELWKTEHAKDQEKVSQEIQKAIQ 360
Cdd:pfam17380 539 EEERRKQQEMEERRRIQEQMRKATEERSRLE---AMEREREMMRQIVESEKARAEYEATTP 596
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
133-401 |
2.61e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGflkekeqeaisfQDRYKELQEKHKQELEDMRKAGHeALSI 212
Cdd:TIGR04523 388 NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-VKEL 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 213 IVDEYKAlLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQrlLEMLDTEKELLKEKIKEaLIQQSQEQKEILEKCL 292
Cdd:TIGR04523 455 IIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE--LKKLNEEKKELEEKVKD-LTKKISSLKEKIEKLE 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 293 EEERQRNKEALVSAAKLEK---EAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE--KVSQEIQKAIQEQ----R 363
Cdd:TIGR04523 531 SEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELidQKEKEKKDLIKEIeekeK 610
|
250 260 270
....*....|....*....|....*....|....*...
gi 1200742253 364 KISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIK 401
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
139-325 |
2.80e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 139 SSLEIKLKVSEEEKQRIKQDVESLMEKHNvlekgflKEKEQEAisfQDRYKELQEKHKQELEDMRKaghealsiivdEYK 218
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRN-----------ELQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 219 ALlQSSVKQQVEAIEKQyisaiekqahkcEELLNAQHQRLLEmldtekellKEKIKEALIQQSQEQKEILEKCLEEERQR 298
Cdd:PRK12704 86 KL-EKRLLQKEENLDRK------------LELLEKREEELEK---------KEKELEQKQQELEKKEEELEELIEEQLQE 143
|
170 180
....*....|....*....|....*..
gi 1200742253 299 nkeaLVSAAKLEKEAVKDAVLKVVEEE 325
Cdd:PRK12704 144 ----LERISGLTAEEAKEILLEKVEEE 166
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
196-318 |
3.26e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.81 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 196 KQELEDMrKAGHEALSIIVDEYKALLQSsVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKE 275
Cdd:PRK00409 515 KEKLNEL-IASLEELERELEQKAEEAEA-LLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1200742253 276 ALIQQSQEQKEILEKCLEEERQRNKEAL--VSAAKLEKEAVKDAV 318
Cdd:PRK00409 593 LRQLQKGGYASVKAHELIEARKRLNKANekKEKKKKKQKEKQEEL 637
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
122-334 |
3.74e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 39.74 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 122 SEDPGANVSNIQLQQKISSLEIKLKV-SEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELE 200
Cdd:pfam09731 225 PEHLDNVEEKVEKAQSLAKLVDQYKElVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 201 DMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEK----QAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEA 276
Cdd:pfam09731 305 ELKKREEKHIERALEKQKEELDKLAEELSARLEEVRAADEAQlrleFEREREEIRESYEEKLRTELERQAEAHEEHLKDV 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1200742253 277 LIQQSQE----QKEILEKCLEEERQRNKEALvSAAKLEKEAVKDAVLKVVEEERKNLeKAHA 334
Cdd:pfam09731 385 LVEQEIElqreFLQDIKEKVEEERAGRLLKL-NELLANLKGLEKATSSHSEVEDENR-KAQQ 444
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
168-331 |
7.54e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 38.87 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 168 VLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDM------RKAGHEALSIIVDEYKallqssvkqqvEAIEKQyisaiE 241
Cdd:pfam10168 543 VFREEYLKKHDLAREEIQKRVKLLKLQKEQQLQELqsleeeRKSLSERAEKLAEKYE-----------EIKDKQ-----E 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 242 KQAHKCEELLNAQHQRLLEMLDTEKELLKE--KIKEAL------IQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEA 313
Cdd:pfam10168 607 KLMRRCKKVLQRLNSQLPVLSDAEREMKKEleTINEQLkhlanaIKQAKKKMNYQRYQIAKSQSIRKKSSLSLSEKQRKT 686
|
170
....*....|....*...
gi 1200742253 314 VKDaVLKVVEEERKNLEK 331
Cdd:pfam10168 687 IKE-ILKQLGSEIDELIK 703
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-403 |
8.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.74 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 174 LKEKEQEAISFQDRYKELQE---KHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQY---------ISAIE 241
Cdd:COG4913 612 LAALEAELAELEEELAEAEErleALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELerldassddLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 242 KQAHKCEELLNAQHQRLLEmLDTEKELLKEKIKEA--LIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKeavkdavl 319
Cdd:COG4913 692 EQLEELEAELEELEEELDE-LKGEIGRLEKELEQAeeELDELQDRLEAAEDLARLELRALLEERFAAALGDA-------- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742253 320 kVVEEERKNLEkahaEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQE--TVKAAIIEEQKRSEKAVEEAVKRTRDELI 397
Cdd:COG4913 763 -VERELRENLE----ERIDALRARLNRAEEELERAMRAFNREWPAETADldADLESLPEYLALLDRLEEDGLPEYEERFK 837
|
....*.
gi 1200742253 398 EYIKEQ 403
Cdd:COG4913 838 ELLNEN 843
|
|
| |
